LOC109540394 cDNA ORF clone, Dendroctonus ponderosae(mountain pine beetle)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC109540394
Entrez Gene ID	109540394
Full Name	uncharacterized LOC109540394
Gene Type	protein-coding
Organism	Dendroctonus ponderosae(mountain pine beetle)

mRNA and Protein(s)

mRNA	Protein	Name
XM_019908754.1	XP_019764313.1	uncharacterized protein LOC109540394

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis.
Keeling CI, Li M, Sandhu HK, Henderson H, Yuen MM, Bohlmann J
Insect biochemistry and molecular biology70170-83(2016 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC109540394 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC109540394 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODe44647	XM_019908754.1 Latest version!	Dendroctonus ponderosae uncharacterized LOC109540394 (LOC109540394), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$342.30 $489.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC109540394 ( XM_019908754.1 ) cDNA ORF clone, Dendroctonus ponderosae(mountain pine beetle) -> XP_019764313.1 Dendroctonus ponderosae uncharacterized LOC109540394 (LOC109540394), mRNA.

Price & Availability↑

CloneID	ODe44647
Clone ID Related Accession (Same CDS sequence)	XM_019908754.1
Accession Version	XM_019908754.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1809bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-01-09
Organism	Dendroctonus ponderosae(mountain pine beetle)
Product	uncharacterized protein LOC109540394
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017852121.1) and transcript sequences (GAFW01013524.1 and GDAR01001162.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Dendroctonus ponderosae Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 515 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END##

ATGGACAAGA CGAATGCCTA CGAGCCGGGG CAGGACAATG TAATGTTGGA GTTTATACCA 
AAAATTGAAA AAAATGATCC CGATCCCGGA AAGATGAATT GTCGCTTGTG CTTGGCGGAA 
ATTAATGAAA GCGACTTTTC AGTTCTTGAC GGCATTTTTA AGGATATGCT GGAGATAATT 
CTCCCTGAAC TGAATCTGGT AATATGCGAA TCCCCTTCAT TATGCACAAA CTGTCTGGAA 
ACGTTAAAAC AAGCCTACAA CTTTAAATCA TCATGTTTAG AAGTAGAAGA TAAAATACAT 
GATTTTATGA GCTCAAACCC GTCCTGCGTA AATTTGAAAC AAATGGTACA AGCAACTAAT 
AGCATTGGGC CGATACCTGA TGCTACTTCA GTATGTCGCA CCTGTTTAGG AGTCAGCGAG 
GAATCGTTAA ATACGAAAAT CGCTTCTTAT GAAGGTGATC CGTTGCAAAA CATGTTTGAA 
AAATGCCTAC CTGAAATGCG ACTGGAATTA ACTAAAGATC CGAGTATCTG TTCCCTCTGC 
CTGGAACAAC TAGAGGAACA GTTTCAATTT ATAATGCAAT GCCTTGATAC TGAGGCAAAA 
GTCAGCTGTT ATTCAGAAAG TAAAAAGATT TTTAAAGGGG TAGAGTTGCA AGCTGTGCAT 
GTGTTTTCTA TCACTATAGA CGAAAGCGAT GAACTGGAAA AACCATATGA AGAAATTGAT 
TCAAATTCAG ATAGAACCAT GGCAATCAAA CTGGAAGAAA CCCGTATTAA AAGCATGGGT 
ATAAAAGAAG AAGATGGACT TAGCGTAACC AGGATGGACT TTGATGAATG TGTGTTTTAT 
CCTGAAATAA AAAGTAAAGT GGAACCTTGT TCAGATTCAG AGGATCAACA TCAACCAAAT 
GAAACTGCAC AACAGAGATT TATGAAACAA AAACGCCAAA CTAAGTGTGA CGAGGGCGAT 
AGTGATGACT CCGTAACGAA AGAAAGCGAT CTGTTAGACG TAAGAAGAGT AATTTGTACT 
CAATCAGCAT TAGATGAAAG TCCAATATCC AAACCAAAAC CACGGTATTA TTTCAGAACT 
GAGGATGATG ACGTTAGCGA GGACGAATTG CCAACGCGTT CGAAACGGTG TAAGTTCTGC 
GACTTTAAAA CAACATTCTC GAGCCGATAC AAGGCTCACA TGACGATGAA CCACTCAAAC 
GAAGAAAAAA AGGAGGAGGA GAAGATGAAA AAGGTCCCTG ATCCGTACTT TAGATGTCGA 
CAGCCGAATT GCGACTTTAA AACGATGAGT AAACGGGAAA ATGCTGCCCA CAAACAGCAA 
CATAAAAAGG ACAGAGAACA ACATTGCAAT TATTGTGGGA TGACATTTGT TAGGCCAGAT 
TTTCTGAAAA AGCATGTCGA TAACCATGAG GCAAATCCGA ACACATCAAA TGTAGAGAAA 
AAAACAACGT GCAACACAGG CACAAGCTTC AATATGAGCA AAAGAAAGGA ATCAAGAAAA 
ACGTTCAGCA TAAATGGACA GGTCTTGAAA ATGTTCAAAT GTCGTCTATG TCCCTACCAA 
ACAAGGCTGA AGAGCAACCA TGAGCGGCAT GCGTTAACGC ATAAGAAAAT CACTCAAATC 
GTTGCGCATA AGTGCAACCT TTGTAATTTC GAGACAATTC ACAAAGAGAA CTTCATGACT 
CACATGCATA ACACCCACAA TGAAGGAGAC AGCAAATTGA TGAAGTGTTT TCTCTGCTCG 
TTCCAACCTG CTGATGAAGC GGCGTTGAAG CAGCACGTGT TGCAGGTGCA CAAAAGTACT 
CCAGGATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_019764313.1
CDS	289..2097
Translation	MDKTNAYEPGQDNVMLEFIPKIEKNDPDPGKMNCRLCLAEINESDFSVLDGIFKDMLEIILPELNLVICESPSLCTNCLETLKQAYNFKSSCLEVEDKIHDFMSSNPSCVNLKQMVQATNSIGPIPDATSVCRTCLGVSEESLNTKIASYEGDPLQNMFEKCLPEMRLELTKDPSICSLCLEQLEEQFQFIMQCLDTEAKVSCYSESKKIFKGVELQAVHVFSITIDESDELEKPYEEIDSNSDRTMAIKLEETRIKSMGIKEEDGLSVTRMDFDECVFYPEIKSKVEPCSDSEDQHQPNETAQQRFMKQKRQTKCDEGDSDDSVTKESDLLDVRRVICTQSALDESPISKPKPRYYFRTEDDDVSEDELPTRSKRCKFCDFKTTFSSRYKAHMTMNHSNEEKKEEEKMKKVPDPYFRCRQPNCDFKTMSKRENAAHKQQHKKDREQHCNYCGMTFVRPDFLKKHVDNHEANPNTSNVEKKTTCNTGTSFNMSKRKESRKTFSINGQVLKMFKCRLCPYQTRLKSNHERHALTHKKITQIVAHKCNLCNFETIHKENFMTHMHNTHNEGDSKLMKCFLCSFQPADEAALKQHVLQVHKSTPG

Target ORF information:

RefSeq Version	XM_019908754.1
Organism	Dendroctonus ponderosae(mountain pine beetle)
Definition	Dendroctonus ponderosae uncharacterized LOC109540394 (LOC109540394), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_019908754.1

ORF Insert Sequence:

ATGGACAAGA CGAATGCCTA CGAGCCGGGG CAGGACAATG TAATGTTGGA GTTTATACCA 
AAAATTGAAA AAAATGATCC CGATCCCGGA AAGATGAATT GTCGCTTGTG CTTGGCGGAA 
ATTAATGAAA GCGACTTTTC AGTTCTTGAC GGCATTTTTA AGGATATGCT GGAGATAATT 
CTCCCTGAAC TGAATCTGGT AATATGCGAA TCCCCTTCAT TATGCACAAA CTGTCTGGAA 
ACGTTAAAAC AAGCCTACAA CTTTAAATCA TCATGTTTAG AAGTAGAAGA TAAAATACAT 
GATTTTATGA GCTCAAACCC GTCCTGCGTA AATTTGAAAC AAATGGTACA AGCAACTAAT 
AGCATTGGGC CGATACCTGA TGCTACTTCA GTATGTCGCA CCTGTTTAGG AGTCAGCGAG 
GAATCGTTAA ATACGAAAAT CGCTTCTTAT GAAGGTGATC CGTTGCAAAA CATGTTTGAA 
AAATGCCTAC CTGAAATGCG ACTGGAATTA ACTAAAGATC CGAGTATCTG TTCCCTCTGC 
CTGGAACAAC TAGAGGAACA GTTTCAATTT ATAATGCAAT GCCTTGATAC TGAGGCAAAA 
GTCAGCTGTT ATTCAGAAAG TAAAAAGATT TTTAAAGGGG TAGAGTTGCA AGCTGTGCAT 
GTGTTTTCTA TCACTATAGA CGAAAGCGAT GAACTGGAAA AACCATATGA AGAAATTGAT 
TCAAATTCAG ATAGAACCAT GGCAATCAAA CTGGAAGAAA CCCGTATTAA AAGCATGGGT 
ATAAAAGAAG AAGATGGACT TAGCGTAACC AGGATGGACT TTGATGAATG TGTGTTTTAT 
CCTGAAATAA AAAGTAAAGT GGAACCTTGT TCAGATTCAG AGGATCAACA TCAACCAAAT 
GAAACTGCAC AACAGAGATT TATGAAACAA AAACGCCAAA CTAAGTGTGA CGAGGGCGAT 
AGTGATGACT CCGTAACGAA AGAAAGCGAT CTGTTAGACG TAAGAAGAGT AATTTGTACT 
CAATCAGCAT TAGATGAAAG TCCAATATCC AAACCAAAAC CACGGTATTA TTTCAGAACT 
GAGGATGATG ACGTTAGCGA GGACGAATTG CCAACGCGTT CGAAACGGTG TAAGTTCTGC 
GACTTTAAAA CAACATTCTC GAGCCGATAC AAGGCTCACA TGACGATGAA CCACTCAAAC 
GAAGAAAAAA AGGAGGAGGA GAAGATGAAA AAGGTCCCTG ATCCGTACTT TAGATGTCGA 
CAGCCGAATT GCGACTTTAA AACGATGAGT AAACGGGAAA ATGCTGCCCA CAAACAGCAA 
CATAAAAAGG ACAGAGAACA ACATTGCAAT TATTGTGGGA TGACATTTGT TAGGCCAGAT 
TTTCTGAAAA AGCATGTCGA TAACCATGAG GCAAATCCGA ACACATCAAA TGTAGAGAAA 
AAAACAACGT GCAACACAGG CACAAGCTTC AATATGAGCA AAAGAAAGGA ATCAAGAAAA 
ACGTTCAGCA TAAATGGACA GGTCTTGAAA ATGTTCAAAT GTCGTCTATG TCCCTACCAA 
ACAAGGCTGA AGAGCAACCA TGAGCGGCAT GCGTTAACGC ATAAGAAAAT CACTCAAATC 
GTTGCGCATA AGTGCAACCT TTGTAATTTC GAGACAATTC ACAAAGAGAA CTTCATGACT 
CACATGCATA ACACCCACAA TGAAGGAGAC AGCAAATTGA TGAAGTGTTT TCTCTGCTCG 
TTCCAACCTG CTGATGAAGC GGCGTTGAAG CAGCACGTGT TGCAGGTGCA CAAAAGTACT 
CCAGGATGA