sltm cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	sltm
Entrez Gene ID	406642
Full Name	SAFB-like, transcription modulator
Synonyms	wu:fd12b08,zgc:65985
General protein information	Preferred Names SAFB-like, transcription modulator Names SAFB-like transcription modulator
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_213333.2	NP_998498.2	SAFB-like transcription modulator

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Sltm	NP_080613.1
Pan troglodytes (chimpanzee)	SLTM	XP_001172600.1
Homo sapiens (human)	SLTM	NP_079031.2
	SLTM	XP_002804838.1
Bos taurus (cattle)	SLTM	XP_003586617.2
Canis lupus familiaris (dog)	SLTM	XP_864261.1
Danio rerio (zebrafish)	sltm	NP_998498.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
Ca?estro C, Catchen JM, Rodr?guez-Mar? A, Yokoi H, Postlethwait JH
PLoS genetics5(5)e1000496(2009 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following sltm gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sltm cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa36829	NM_213333.2 Latest version!	Danio rerio SAFB-like, transcription modulator (sltm), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$510.30 $729.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

sltm ( NM_213333.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_998498.2 Danio rerio SAFB-like, transcription modulator (sltm), mRNA.

Price & Availability↑

CloneID	ODa36829
Clone ID Related Accession (Same CDS sequence)	NM_213333.2
Accession Version	NM_213333.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2952bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	SAFB-like transcription modulator
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL935053.6. On Jul 24, 2010 this sequence version replaced NM_213333.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## CDS exon combination :: GFIL01038963.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGCGTCGG GGGCCATTTC AGCGGAGACT AAGAAGATTA CAGATTTACG TGTTGTGGAC 
CTCAAATCAG AGCTCAAACG AAGAAATTTG GATGTGAGCG GGGTGAAAAA CACACTGATC 
GCAAGACTGA AGCAGGCCAT AGAAGATGAA GGTGGTGATC CAGACAACAT TGAGATCACC 
ATGTCAGCTG ACACACCCAC CAGAAAATAC GGCAAGTCTA AAGGAAAAAA GACAGAGCTG 
GACACTGATA CCACCATGGA GGAGGAGTCC TTCTCTAAGG AGACCGAGGA AGAGGAATCT 
GAAAAAGATG TAACTGATAC TGATGATGCT ACTCGTGACA TTTCTAAAAC CTTCTCCTGC 
GAAGACGGCC TTGCGGAGCC TGAGGTTGAG GCAGGAGTGG AGCCTGATCT TGAGGCTGAG 
GCAGAAGTGG AGCCCGAGCC TGATCCTGAT GCAGAGATTG AGGCAGAGCG AGAAGCTGAT 
CCTGAAACCC CAGCGCTGGA GGCCATGGAG AGTGAGCCTG CTCCTGAACC CCTGAAAGAA 
GTTGAGGATG ACAATATATC TGTCACCATC CAGGCTGAAG ATGCCATCAC ACTAGATGTG 
GATGGCGACG ACCTCCTGGA AACAGGTAAA CATGTGAAAA TTCCAGATTC TGAGGCAGAC 
AAGTGCTGCG AAGAGCCTGA GGCCACTGCT GAGATGGGGC AGGAGACAGA CTCTCTGACT 
AAAGTAATAG AAGGCCACAA GGATGGTAAG AGAGATGACG GGCTGAAGTC TGACACCGCC 
AAGAAGGACA GCAGAGAGGC CTCGAAGAAA GGAGAAACGG GAGACAAGGA AAAGGATTCT 
GGGAAGAAAG GCCCCTCTTC AACTGGGGCA ACAGGTCAAG CAAAGAGCTC TTCAAAAGAC 
AGAGATGGAA AGGCTGCGAA AGATGAAAAA GGAAGTGGCA GCAGCAGTAC CAGCTCTACT 
CGCAATCTGT GGGTGAGTGG CCTATCATCC AACACCAAAG CAGCTGATCT CAAGAACCTC 
TTTGGCAAAT ATGGAAAGGT TTTTAGTGCC AAAGTGGTCA CCAATGCTCG TAGCCCAGGA 
GCTAAATGTT ATGGATTAGT TACCATGTCG TCCAGTGCAG AAGTGGCCAG GTGCATCTCT 
CATTTGGACC GCACAGAACT CCATGGACAA CAAATATCTG TGGACAGGGT GAAAACTGAC 
CCATTTAAAA AGGACTTCTC AAAAAAAGAG GCAGAAGAAA AGGCGGCTTC CATTAAAATT 
TCTGGAGAAA AGCGCACTCC AGTTGGAGCA AAACCTTCCA GCAAGACTCC AGTTTCATCT 
AAGAAAGAGG AAAAGAAATC AGACAAACCC TTCGAGAAGG ACAGCAAAGA CATCAAAAAA 
CAGGACTCCA AAAGCAACAA ATCTGATGCA CCTTCCAATT CTGGACCAGA GGCAGCAAAG 
AAAGATGACA AGAAACATGG ACGAAAGAGT CCAGGCAATA CAGTGCTCAA CCAACCTAAA 
GGAGAGCAAA TCTTCAATAA ATCTCGTCCT CCTTTTAGAA GGGGTGGGAG GTTTGAGAAG 
CCTGGTCCAC CCAACATGAT GAACAGACGC CCCAGATGGT TCGGACCACC TGATGAGATG 
GAGATGATGA AGAAAGGGCG TCCCATGCCT AACAAAGGTG GCAATATTGA AATCCTGCCA 
TTTGAGAAGA TTAAGGAACA GCGAATGCGT GAGCGCATGA TCAGGATGGA ACGTGCTCGC 
AGGGCTGTGG AACTGCGCAG ACGACGCGAA GTAGCAGAGC GGGAGCGCAG AGAGCGAGAG 
CGTATTCGTG TTATGCGTGA GCGTGAAGAA AGGGAGAACC TAATGAGAGA ACGTCAAAGG 
CTGGAAGTGG AAAGACAAAA ACTAGAACGC GAGCGCATGG AGAGAGAGAG ACTGGAACGG 
GAGCGGATTC GAATAGAGCA GGAGCGACGC AAGGAAGCAG AGCGTTTGGC TCGTGAACGC 
GAGGAACTAA GACGACAACA GGAACAGCTG CGTTACGAGC AGGAGAAACG AAACAACTTA 
AAGAGGGGAC GTGATGTTGA CCAGAGGAGG GACGATCCAT ACTGGAATAG TGCTAAAAAG 
ATGGCAACTG AGCCAGAGGG CCGGATTAGT CAAGGTGGTG ACTACAACAG CAGACAACAA 
AACCGTTTTA ATGATTTCAA CGCCAGAGAC CGCAACCGGT ACCCACAGTC CTCTGCTGTG 
CAGTCCAACA ACTTTGATAG ACGTAACCGC TTTGTTAACG AAGCTGATTC AAAGAAGAAT 
CGACCCGCTC CACGTCGTGA AGGCTCTGGC TTTGAACGAT ATCCTAAAGA CTTTGAAACT 
GTACGGAGAG CAGAACAACC GCCTCCACCT CGTGCAGAGC TCCGAGACAG TGATCGACGA 
GAGATTCGAG ATCGTGATGA GCGCAGACAG GTGTCCATGC CTGATCGAGC ATCTGGAGGC 
AGAGCACCAC CTCCTGCCAT TGCCCACTCC CGCACCCCCA GAGACGGCAG CCATGCTGGC 
TGGAAGAATG ATGGAGGAAT GAATACGAAG CAAGATGTCA GACCAGTTCA GATACGTCAG 
GAACGTCCAG GGCGAGACGG TCCTGGACCT GCCATGAGAG GGGTGTCCTC AGCCAGCCGT 
GGCAGAAGCA GCTTCAACAG CCGAGATGGC AGAGCTGTGG TTATGGGAGA GCAGTCGCAC 
TTTAGCAGTG GCAGGCAGGT GGTGGTAGAG AGACATGGAC GTGATCAGGG CCCCAGGAAA 
GAATGGCACG GGGCTGGTGG TTCACAGAGC GGTGGATTCA CAGATAACCG CCGGATGGGA 
GACAGTCGGC CTGGCATGAT GGCTTCACAC TCCAGTCATT CCTCCACTGG TATAAACAGA 
ATTGTGCAGA TCACTAATGT TCCGATGACC GGCAGCAGCG GAGGATTCAA GCCCTTTAAA 
GGAAGGTTCT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_998498.2
CDS	74..3025
Translation	MASGAISAETKKITDLRVVDLKSELKRRNLDVSGVKNTLIARLKQAIEDEGGDPDNIEITMSADTPTRKYGKSKGKKTELDTDTTMEEESFSKETEEEESEKDVTDTDDATRDISKTFSCEDGLAEPEVEAGVEPDLEAEAEVEPEPDPDAEIEAEREADPETPALEAMESEPAPEPLKEVEDDNISVTIQAEDAITLDVDGDDLLETGKHVKIPDSEADKCCEEPEATAEMGQETDSLTKVIEGHKDGKRDDGLKSDTAKKDSREASKKGETGDKEKDSGKKGPSSTGATGQAKSSSKDRDGKAAKDEKGSGSSSTSSTRNLWVSGLSSNTKAADLKNLFGKYGKVFSAKVVTNARSPGAKCYGLVTMSSSAEVARCISHLDRTELHGQQISVDRVKTDPFKKDFSKKEAEEKAASIKISGEKRTPVGAKPSSKTPVSSKKEEKKSDKPFEKDSKDIKKQDSKSNKSDAPSNSGPEAAKKDDKKHGRKSPGNTVLNQPKGEQIFNKSRPPFRRGGRFEKPGPPNMMNRRPRWFGPPDEMEMMKKGRPMPNKGGNIEILPFEKIKEQRMRERMIRMERARRAVELRRRREVAERERRERERIRVMREREERENLMRERQRLEVERQKLERERMERERLERERIRIEQERRKEAERLAREREELRRQQEQLRYEQEKRNNLKRGRDVDQRRDDPYWNSAKKMATEPEGRISQGGDYNSRQQNRFNDFNARDRNRYPQSSAVQSNNFDRRNRFVNEADSKKNRPAPRREGSGFERYPKDFETVRRAEQPPPPRAELRDSDRREIRDRDERRQVSMPDRASGGRAPPPAIAHSRTPRDGSHAGWKNDGGMNTKQDVRPVQIRQERPGRDGPGPAMRGVSSASRGRSSFNSRDGRAVVMGEQSHFSSGRQVVVERHGRDQGPRKEWHGAGGSQSGGFTDNRRMGDSRPGMMASHSSHSSTGINRIVQITNVPMTGSSGGFKPFKGRF

Target ORF information:

RefSeq Version	NM_213333.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SAFB-like, transcription modulator (sltm), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_213333.2

ORF Insert Sequence:

ATGGCGTCGG GGGCCATTTC AGCGGAGACT AAGAAGATTA CAGATTTACG TGTTGTGGAC 
CTCAAATCAG AGCTCAAACG AAGAAATTTG GATGTGAGCG GGGTGAAAAA CACACTGATC 
GCAAGACTGA AGCAGGCCAT AGAAGATGAA GGTGGTGATC CAGACAACAT TGAGATCACC 
ATGTCAGCTG ACACACCCAC CAGAAAATAC GGCAAGTCTA AAGGAAAAAA GACAGAGCTG 
GACACTGATA CCACCATGGA GGAGGAGTCC TTCTCTAAGG AGACCGAGGA AGAGGAATCT 
GAAAAAGATG TAACTGATAC TGATGATGCT ACTCGTGACA TTTCTAAAAC CTTCTCCTGC 
GAAGACGGCC TTGCGGAGCC TGAGGTTGAG GCAGGAGTGG AGCCTGATCT TGAGGCTGAG 
GCAGAAGTGG AGCCCGAGCC TGATCCTGAT GCAGAGATTG AGGCAGAGCG AGAAGCTGAT 
CCTGAAACCC CAGCGCTGGA GGCCATGGAG AGTGAGCCTG CTCCTGAACC CCTGAAAGAA 
GTTGAGGATG ACAATATATC TGTCACCATC CAGGCTGAAG ATGCCATCAC ACTAGATGTG 
GATGGCGACG ACCTCCTGGA AACAGGTAAA CATGTGAAAA TTCCAGATTC TGAGGCAGAC 
AAGTGCTGCG AAGAGCCTGA GGCCACTGCT GAGATGGGGC AGGAGACAGA CTCTCTGACT 
AAAGTAATAG AAGGCCACAA GGATGGTAAG AGAGATGACG GGCTGAAGTC TGACACCGCC 
AAGAAGGACA GCAGAGAGGC CTCGAAGAAA GGAGAAACGG GAGACAAGGA AAAGGATTCT 
GGGAAGAAAG GCCCCTCTTC AACTGGGGCA ACAGGTCAAG CAAAGAGCTC TTCAAAAGAC 
AGAGATGGAA AGGCTGCGAA AGATGAAAAA GGAAGTGGCA GCAGCAGTAC CAGCTCTACT 
CGCAATCTGT GGGTGAGTGG CCTATCATCC AACACCAAAG CAGCTGATCT CAAGAACCTC 
TTTGGCAAAT ATGGAAAGGT TTTTAGTGCC AAAGTGGTCA CCAATGCTCG TAGCCCAGGA 
GCTAAATGTT ATGGATTAGT TACCATGTCG TCCAGTGCAG AAGTGGCCAG GTGCATCTCT 
CATTTGGACC GCACAGAACT CCATGGACAA CAAATATCTG TGGACAGGGT GAAAACTGAC 
CCATTTAAAA AGGACTTCTC AAAAAAAGAG GCAGAAGAAA AGGCGGCTTC CATTAAAATT 
TCTGGAGAAA AGCGCACTCC AGTTGGAGCA AAACCTTCCA GCAAGACTCC AGTTTCATCT 
AAGAAAGAGG AAAAGAAATC AGACAAACCC TTCGAGAAGG ACAGCAAAGA CATCAAAAAA 
CAGGACTCCA AAAGCAACAA ATCTGATGCA CCTTCCAATT CTGGACCAGA GGCAGCAAAG 
AAAGATGACA AGAAACATGG ACGAAAGAGT CCAGGCAATA CAGTGCTCAA CCAACCTAAA 
GGAGAGCAAA TCTTCAATAA ATCTCGTCCT CCTTTTAGAA GGGGTGGGAG GTTTGAGAAG 
CCTGGTCCAC CCAACATGAT GAACAGACGC CCCAGATGGT TCGGACCACC TGATGAGATG 
GAGATGATGA AGAAAGGGCG TCCCATGCCT AACAAAGGTG GCAATATTGA AATCCTGCCA 
TTTGAGAAGA TTAAGGAACA GCGAATGCGT GAGCGCATGA TCAGGATGGA ACGTGCTCGC 
AGGGCTGTGG AACTGCGCAG ACGACGCGAA GTAGCAGAGC GGGAGCGCAG AGAGCGAGAG 
CGTATTCGTG TTATGCGTGA GCGTGAAGAA AGGGAGAACC TAATGAGAGA ACGTCAAAGG 
CTGGAAGTGG AAAGACAAAA ACTAGAACGC GAGCGCATGG AGAGAGAGAG ACTGGAACGG 
GAGCGGATTC GAATAGAGCA GGAGCGACGC AAGGAAGCAG AGCGTTTGGC TCGTGAACGC 
GAGGAACTAA GACGACAACA GGAACAGCTG CGTTACGAGC AGGAGAAACG AAACAACTTA 
AAGAGGGGAC GTGATGTTGA CCAGAGGAGG GACGATCCAT ACTGGAATAG TGCTAAAAAG 
ATGGCAACTG AGCCAGAGGG CCGGATTAGT CAAGGTGGTG ACTACAACAG CAGACAACAA 
AACCGTTTTA ATGATTTCAA CGCCAGAGAC CGCAACCGGT ACCCACAGTC CTCTGCTGTG 
CAGTCCAACA ACTTTGATAG ACGTAACCGC TTTGTTAACG AAGCTGATTC AAAGAAGAAT 
CGACCCGCTC CACGTCGTGA AGGCTCTGGC TTTGAACGAT ATCCTAAAGA CTTTGAAACT 
GTACGGAGAG CAGAACAACC GCCTCCACCT CGTGCAGAGC TCCGAGACAG TGATCGACGA 
GAGATTCGAG ATCGTGATGA GCGCAGACAG GTGTCCATGC CTGATCGAGC ATCTGGAGGC 
AGAGCACCAC CTCCTGCCAT TGCCCACTCC CGCACCCCCA GAGACGGCAG CCATGCTGGC 
TGGAAGAATG ATGGAGGAAT GAATACGAAG CAAGATGTCA GACCAGTTCA GATACGTCAG 
GAACGTCCAG GGCGAGACGG TCCTGGACCT GCCATGAGAG GGGTGTCCTC AGCCAGCCGT 
GGCAGAAGCA GCTTCAACAG CCGAGATGGC AGAGCTGTGG TTATGGGAGA GCAGTCGCAC 
TTTAGCAGTG GCAGGCAGGT GGTGGTAGAG AGACATGGAC GTGATCAGGG CCCCAGGAAA 
GAATGGCACG GGGCTGGTGG TTCACAGAGC GGTGGATTCA CAGATAACCG CCGGATGGGA 
GACAGTCGGC CTGGCATGAT GGCTTCACAC TCCAGTCATT CCTCCACTGG TATAAACAGA 
ATTGTGCAGA TCACTAATGT TCCGATGACC GGCAGCAGCG GAGGATTCAA GCCCTTTAAA 
GGAAGGTTCT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.
PLoS genetics5(5)e1000496(2009 May)
Ca?estro C,Catchen JM,Rodr?guez-Mar? A,Yokoi H,Postlethwait JH