sox21b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	sox21b
Entrez Gene ID	406246
Full Name	SRY (sex determining region Y)-box 21b
Synonyms	zgc:110678
General protein information	Preferred Names SRY (sex determining region Y)-box 21b Names transcription factor Sox-21-B
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001009888.2	NP_001009888.1	transcription factor Sox-21-B

Pathways from BioSystems

Homologies

Homo sapiens (human)	SOX21	NP_009015.1
	SOX21	XP_001084273.1
Rattus norvegicus (Norway rat)	Sox21	XP_006252529.1
Mus musculus (house mouse)	Sox21	NP_808421.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP010922	XP_001230649.2
Xenopus tropicalis (tropical clawed frog)	sox21	XP_002939326.1
Danio rerio (zebrafish)	sox21b	NP_001009888.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.
Wang Y, Lu Y, Zhang Y, Ning Z, Li Y, Zhao Q, Lu H, Huang R, Xia X, Feng Q, Liang X, Liu K, Zhang L, Lu T, Huang T, Fan D, Weng Q, Zhu C, Lu Y, Li W, Wen Z, Zhou C, Tian Q, Kang X, Shi M, Zhang W, Jang S, Du F, He S, Liao L, Li Y, Gui B, He H, Ning Z, Yang C, He L, Luo L, Yang R, Luo Q, Liu X, Li S, Huang W, Xiao L, Lin H, Han B, Zhu Z
Nature genetics47(6)625-31(2015 Jun)

sox21a directs lateral line patterning by modulating FGF signaling.
Ariza-Cosano A, Bensimon-Brito A, G?mez-Skarmeta JL, Bessa J
Developmental neurobiology75(1)80-92(2015 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following sox21b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sox21b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03227	NM_001009888.2 Latest version!	Danio rerio SRY-box transcription factor 21b (sox21b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

sox21b ( NM_001009888.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001009888.1 Danio rerio SRY-box transcription factor 21b (sox21b), mRNA.

Price & Availability↑

CloneID	ODa03227
Clone ID Related Accession (Same CDS sequence)	NM_001009888.2
Accession Version	NM_001009888.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 738bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-06-30
Organism	Danio rerio(zebrafish)
Product	transcription factor Sox-21-B
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC095366.1. On May 15, 2005 this sequence version replaced NM_001009888.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC095366.1 [ECO:0000332] ##Evidence-Data-END##

ATGTCCAAGC CCATGGATCA CGTTAAGCGT CCTATGAACG CGTTCATGGT CTGGTCCCGA 
GCGCAGCGGC GGAAAATGGC CCAGGAGAAC CCGAAAATGC ACAATTCCGA AATCAGCAAG 
CGCCTCGGAG CGGAGTGGAA ACTTCTGACG GAGTCTGAAA AGAGGCCGTT CATTGACGAA 
GCCAAGCGCC TGCGGGCGAT GCACATGAAG GAGCACCCCG ACTACAAATA CAGACCCCGG 
AGGAAGCCCA AGACTTTAAT GAAGAAGGAC AAATTCGCGT TCCCGGTGGC GTATAATTTG 
GGAGAGCACG AGGCGCTGAA GGTGGGCGGC TTACCAGCCG GAGCGCTCAC CGAGTCTCTA 
ATGAGCAACC CGGACAAGGC AGCGGCGGCG GCGGCCGCAG CGGCGGCCAG GGTGTTCTTC 
AACCCCTCAA TGTCCGCAAA CCCGTACTCC TTTTTTGATC TTGGCTCAAA AATGACCGAA 
CTTTCGCCAC CGTCTTTCTC CTACGCCTCA CCATTGGGTT ACCCAACAGC GGCGACCGCG 
TTTTCGGGCG CAGTCGGCGG CGGAGCGCAC ACACACACGC ACTCGCATCC TTCACCGGGT 
AACCCCGGGT ACATGATCCC GTGTAACTGC GCAGCCTGGC CGTCAGCGGG GCTCCAGCCG 
CCCCTTGCAT ACATTTTACT ACCCGGAATG GGAAAACCAC AACTTGAACC GTATCCCGCG 
TACGCGGCGG CGTTATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001009888.1
CDS	264..1001
Translation	MSKPMDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLMKKDKFAFPVAYNLGEHEALKVGGLPAGALTESLMSNPDKAAAAAAAAAARVFFNPSMSANPYSFFDLGSKMTELSPPSFSYASPLGYPTAATAFSGAVGGGAHTHTHSHPSPGNPGYMIPCNCAAWPSAGLQPPLAYILLPGMGKPQLEPYPAYAAAL

Target ORF information:

RefSeq Version	NM_001009888.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SRY-box transcription factor 21b (sox21b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001009888.2

ORF Insert Sequence:

ATGTCCAAGC CCATGGATCA CGTTAAGCGT CCTATGAACG CGTTCATGGT CTGGTCCCGA 
GCGCAGCGGC GGAAAATGGC CCAGGAGAAC CCGAAAATGC ACAATTCCGA AATCAGCAAG 
CGCCTCGGAG CGGAGTGGAA ACTTCTGACG GAGTCTGAAA AGAGGCCGTT CATTGACGAA 
GCCAAGCGCC TGCGGGCGAT GCACATGAAG GAGCACCCCG ACTACAAATA CAGACCCCGG 
AGGAAGCCCA AGACTTTAAT GAAGAAGGAC AAATTCGCGT TCCCGGTGGC GTATAATTTG 
GGAGAGCACG AGGCGCTGAA GGTGGGCGGC TTACCAGCCG GAGCGCTCAC CGAGTCTCTA 
ATGAGCAACC CGGACAAGGC AGCGGCGGCG GCGGCCGCAG CGGCGGCCAG GGTGTTCTTC 
AACCCCTCAA TGTCCGCAAA CCCGTACTCC TTTTTTGATC TTGGCTCAAA AATGACCGAA 
CTTTCGCCAC CGTCTTTCTC CTACGCCTCA CCATTGGGTT ACCCAACAGC GGCGACCGCG 
TTTTCGGGCG CAGTCGGCGG CGGAGCGCAC ACACACACGC ACTCGCATCC TTCACCGGGT 
AACCCCGGGT ACATGATCCC GTGTAACTGC GCAGCCTGGC CGTCAGCGGG GCTCCAGCCG 
CCCCTTGCAT ACATTTTACT ACCCGGAATG GGAAAACCAC AACTTGAACC GTATCCCGCG 
TACGCGGCGG CGTTATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.
Nature genetics47(6)625-31(2015 Jun)
Wang Y,Lu Y,Zhang Y,Ning Z,Li Y,Zhao Q,Lu H,Huang R,Xia X,Feng Q,Liang X,Liu K,Zhang L,Lu T,Huang T,Fan D,Weng Q,Zhu C,Lu Y,Li W,Wen Z,Zhou C,Tian Q,Kang X,Shi M,Zhang W,Jang S,Du F,He S,Liao L,Li Y,Gui B,He H,Ning Z,Yang C,He L,Luo L,Yang R,Luo Q,Liu X,Li S,Huang W,Xiao L,Lin H,Han B,Zhu Z

sox21a directs lateral line patterning by modulating FGF signaling.
Developmental neurobiology75(1)80-92(2015 Jan)
Ariza-Cosano A,Bensimon-Brito A,G?mez-Skarmeta JL,Bessa J

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sox21b cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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