cntn1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cntn1a
Entrez Gene ID	353150
Full Name	contactin 1a
Synonyms	F3,cntn1
General protein information	Preferred Names contactin 1a Names contactin-1a F3/F11/contactin neural cell recognition molecule F11
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_180969.2	NP_851300.2	contactin-1a precursor

Pathways from BioSystems

Homologies

	CNTN1	XP_002798578.1
Pan troglodytes (chimpanzee)	CNTN1	XP_509005.2
Canis lupus familiaris (dog)	CNTN1	XP_005637032.1
Bos taurus (cattle)	CNTN1	NP_776705.1
Homo sapiens (human)	CNTN1	NP_001834.2
Danio rerio (zebrafish)	cntn1a	NP_851300.2
Xenopus tropicalis (tropical clawed frog)	cntn1	XP_002932857.1
Mus musculus (house mouse)	Cntn1	NP_001153119.1
Rattus norvegicus (Norway rat)	Cntn1	NP_476459.1
Gallus gallus (chicken)	CNTN1	NP_001004381.3

Gene Ontology
Bibliography

Related articles in PubMed

Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination.
Takeuchi M, Inoue C, Goshima A, Nagao Y, Shimizu K, Miyamoto H, Shimizu T, Hashimoto H, Yonemura S, Kawahara A, Hirata Y, Yoshida M, Hibi M
Genes to cells : devoted to molecular & cellular mechanisms22(8)723-741(2017 Aug)

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Individual Neuronal Subtypes Exhibit Diversity in CNS Myelination Mediated by Synaptic Vesicle Release.
Koudelka S, Voas MG, Almeida RG, Baraban M, Soetaert J, Meyer MP, Talbot WS, Lyons DA
Current biology : CB26(11)1447-55(2016 Jun)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The complex regulation patterns suggest roles for Cntn1a in myelinating cells and neurons particularly in successful CNS regeneration.
Title: Contactin1a expression is associated with oligodendrocyte differentiation and axonal regeneration in the central nervous system of zebrafish.

The following cntn1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cntn1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa38244	NM_180969.2 Latest version!	Danio rerio contactin 1a (cntn1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cntn1a ( NM_180969.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_851300.2 Danio rerio contactin 1a (cntn1a), mRNA.

Price & Availability↑

CloneID	ODa38244
Clone ID Related Accession (Same CDS sequence)	NM_180969.2
Accession Version	NM_180969.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3099bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-24
Organism	Danio rerio(zebrafish)
Product	contactin-1a precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU458969.1. On Apr 1, 2007 this sequence version replaced NM_180969.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: CU458969.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGATTCCAG AGGCCTTCCA GCCCAGAGCC ATGAAGCACA CCACCACCGT CCTGATGCTC 
GCGCTGTCCT CCCGCTTTTG GTCGGTGTGT GCTGATTTCC CAGAAGTCTT TGGGGGTGAG 
TCTGCAGGCT TCGGGCCGGT GTTCGAGGAG CAGCCGCTCG ACACCATCTA CCCTGAGGAG 
AGTCCAGAGG AGAAGATCAC ACTGACCTGC AGGACCAGAG CCAACCCACC TGCCTCATAC 
AGGTGGAGGC TGAATAACGC AGAGCTGGTG TTAGCGGAGG GCGGTGATCC TCACTACAGT 
GTGTCGGAGG GAAACCTGCT GATCAGCTCA CCTGACAAGA GCAAACATGC GGGAAACTAC 
ACCTGTGTGG CCAGCAACCA GTACGGCAGC GTCACCAGCC GGAGAGCCAG AGTACAGTTC 
GGCTATCTGG ACATGTTCTC CACAGACGAG CGGGAGGCGG TCTACGTCAA GGAGGGCCAG 
GGGGCGGTTC TTCTGTGTGC CCCGCCTCCA CACTTCCCAG AGGATCTGTC GTTCCGCTGG 
ATGCTGAACG AGTTCCCGGA GTTCATCCCT CTGGACCAGC GGCGCTTCGT CTCTCAGAGC 
ACCGGCAACC TCTACATCTC CACGGTGCGC TCCACCGACA GTGGAAACTA CTCCTGCTTC 
GTCTCCAGCC CTGCCATCGC CAAGAGCGTC TTCAGCAAGT TCATCCCGCT GGTGCCCATC 
GCCGAGCGTT CTCTTCGTAA ATATCCTGCT GATATTAAAG TCAAGTCCCC GGACAGCTGG 
GCTCTGCTGG GTCAGAACAT CACGCTCGAG TGTTTCGCGC TGGGGAACCC GATCCCGCAG 
ATCCGCTGGA GGAAGCTGGA CGGTGTTCTC CCGCCGCTCC GCCATGATGT CAGCATGTCC 
GGCGCTCTGC TGCACCTCTA CAGTCTGCAG TATGAGGACG AGGGGCTGTA CGAGTGTGAG 
GCCGACAACT CCAAGGGCAA AGACTGGCAC AAAACACACC TCTACGTGGA GGGAGCTCCT 
GATTGGCTGG AGCAGATCAG CAGTTCAGAG GTGGACATCG GGGGCGATTA CATCATGTCC 
TGTCAGGCCA GCGGGAAACC CAAACCACAC GTGCACTTCC TGAAGAACGG CCACATGTAC 
ATGAAGGGTC ATGAGGTCCG CTTCTCCAGG CTGGGGTTCG AGGACTCTGG GATGTATCAG 
TGTGTGGCTG AGAACCGTCA CGGTGTGATT CACGCTAACG CTGAGCTGCG GGTGTTCGCC 
AGCGCTCCTT CATTCCAGTA TAACCCAGTT AAACCCAAAC TCCTGGGGGC CAGAAACGGC 
CGGGTGGTGT TCGAATGCAG ACCTCGAGCC GCACCGCGAC CCAACATCAC CTGGAGCAAA 
GGAACAGAAC TCCTGCACAA CTCCAGCAGG ATCTCCATCT GGCTGGACGG CAGTTTAGAG 
CTGCTGAACA TCTCCAAGTC TGACGAGGGG AAGTACACCT GCTTCGCAGA GAACGACCGC 
GGCCGAGCCA ACAGCACTGG ATCACTGTCA ATCACAGACG CCACTAAGAT CACTCTGGCT 
CCGTCGAATG CGGATGTGAG TGTGGGCGAG GACGCTCGTA TGGAGTGTGT GGCGTCTCAT 
GACCCCGGCC TCGACCTCAC CTTCATCTGG AGCCTGGACG GACACACCAT CGACCTGCAG 
CGGGACGCAC AGCACTACCA GCGCAAGATG GACAGTGCGA GCGGGACGTC CAGCTCAGAG 
CTGCTGATCA CACACACACA GCTGAGACAC GCCGGACGCT ACAGCTGCAC CGCACAGACA 
CCTGTGGACA ACACCACTGC ATCTGCAGAG CTGGTGGTCA GAGGTCCCCC AGGGCCCCCT 
GGTGGTGTGC GTGTGGATGA GGTGACGTCT GACAGTGTGA GGGTGCTGTG GAGTCACGGC 
ACTGACAATC TGAGCCCCAT CTCCAGATAC ACCGTCCAGC TCAGAGAATC TGCAGCACAG 
CAGGACTGGA GAGACGCCGC TACCTCCCCA GTGAATGTGG AGGGAAATGC AGAAATGGCC 
ACCGTGGTAA ACCTGCTGCC CTGGACGGAG TATGAGTTCC GGGTCATCGC CACCAACACA 
CTGGGCACCG GGCCGCCCAG CGAACCCTCA CCCAAAACCA CCACTAGAGA AGCCCGGCCG 
ATCGTGGCTC CGTCAGACAT AGGTGGCGGG GGAGGGACCA GCCGAGAGCT CACCATCACC 
TGGACGCCGG TGCAGTCTCA GTATTACTAC GGCAGTAACT TCGGCTACAT CATCGCCTTC 
AAGCCCCATA ATGACCCAGA GTGGCTGCGG GTCACCGTCA CTGACCCAGA GGTGCAGAAA 
TACGTCCACA AAGACCCCAA AATCCCCCCG TCCACACGCT TCGAGGTCAA GATGAAGGCC 
TTCAACAGCC AGGGGGAGGG ACCCTTCAGC AACAGCGCTT TCATATACTC TGCACAGGAC 
GTGCCGGCCG AGGCCCCCAT CATCACAGAA GCGAGGGCTC TGTCTGCCAC TGAAGCGATC 
GTCATCTGGG TGCCTGTGCA GCTGCCGACG GTGGAGAGAT ATCAGGTGCG GTACTGGCGT 
GAGTCTGTAG AGAACGAAGC ATCTGCTCAG CGGGTTCTGG TGTCCAGTCG AGAGAATCAC 
ACACGTCTGG ACAACATGAA GCCCGACTCA CACTACCTGG TGGAGGTGCG CGCGTGTAAC 
GGAGCCGGAT ACGGACCCGC CAGCCAGCGC AACAGGATAT ACACCAAGAA GTCCCCTCCC 
AGTCGTCCTC CTAAGATCAT CAGCACTAAG ATGCACTACA GCGGCAGCTC CATCAACATC 
GCCTGGGAGA AGGTGGAGTC GCTGAACAAC GAGTCAACGG TGGCGGGATA TAAGGTCCTG 
TACCGGCAGC ACGGCCAGCC CAGCGGCACG CTCTACACCA CCGAGAAGCA GTCCATCGAC 
CTGCCCATGA GGAGGGGGGA GTACCTGGTG GAGGTGCGGG CACACAGCGA GGGTGGAGAC 
GGGGCCGTCG CACAAGTGCG CATCACAGGT TCGGCTCCGG CTCCGGCTCT GGCCTCGGCT 
CTGCTGCTGC TGCCGCTCCT CTGGACTCTG ATGCTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_851300.2
CDS	82..3180
Translation	MIPEAFQPRAMKHTTTVLMLALSSRFWSVCADFPEVFGGESAGFGPVFEEQPLDTIYPEESPEEKITLTCRTRANPPASYRWRLNNAELVLAEGGDPHYSVSEGNLLISSPDKSKHAGNYTCVASNQYGSVTSRRARVQFGYLDMFSTDEREAVYVKEGQGAVLLCAPPPHFPEDLSFRWMLNEFPEFIPLDQRRFVSQSTGNLYISTVRSTDSGNYSCFVSSPAIAKSVFSKFIPLVPIAERSLRKYPADIKVKSPDSWALLGQNITLECFALGNPIPQIRWRKLDGVLPPLRHDVSMSGALLHLYSLQYEDEGLYECEADNSKGKDWHKTHLYVEGAPDWLEQISSSEVDIGGDYIMSCQASGKPKPHVHFLKNGHMYMKGHEVRFSRLGFEDSGMYQCVAENRHGVIHANAELRVFASAPSFQYNPVKPKLLGARNGRVVFECRPRAAPRPNITWSKGTELLHNSSRISIWLDGSLELLNISKSDEGKYTCFAENDRGRANSTGSLSITDATKITLAPSNADVSVGEDARMECVASHDPGLDLTFIWSLDGHTIDLQRDAQHYQRKMDSASGTSSSELLITHTQLRHAGRYSCTAQTPVDNTTASAELVVRGPPGPPGGVRVDEVTSDSVRVLWSHGTDNLSPISRYTVQLRESAAQQDWRDAATSPVNVEGNAEMATVVNLLPWTEYEFRVIATNTLGTGPPSEPSPKTTTREARPIVAPSDIGGGGGTSRELTITWTPVQSQYYYGSNFGYIIAFKPHNDPEWLRVTVTDPEVQKYVHKDPKIPPSTRFEVKMKAFNSQGEGPFSNSAFIYSAQDVPAEAPIITEARALSATEAIVIWVPVQLPTVERYQVRYWRESVENEASAQRVLVSSRENHTRLDNMKPDSHYLVEVRACNGAGYGPASQRNRIYTKKSPPSRPPKIISTKMHYSGSSINIAWEKVESLNNESTVAGYKVLYRQHGQPSGTLYTTEKQSIDLPMRRGEYLVEVRAHSEGGDGAVAQVRITGSAPAPALASALLLLPLLWTLML

Target ORF information:

RefSeq Version	NM_180969.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio contactin 1a (cntn1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_180969.2

ORF Insert Sequence:

ATGATTCCAG AGGCCTTCCA GCCCAGAGCC ATGAAGCACA CCACCACCGT CCTGATGCTC 
GCGCTGTCCT CCCGCTTTTG GTCGGTGTGT GCTGATTTCC CAGAAGTCTT TGGGGGTGAG 
TCTGCAGGCT TCGGGCCGGT GTTCGAGGAG CAGCCGCTCG ACACCATCTA CCCTGAGGAG 
AGTCCAGAGG AGAAGATCAC ACTGACCTGC AGGACCAGAG CCAACCCACC TGCCTCATAC 
AGGTGGAGGC TGAATAACGC AGAGCTGGTG TTAGCGGAGG GCGGTGATCC TCACTACAGT 
GTGTCGGAGG GAAACCTGCT GATCAGCTCA CCTGACAAGA GCAAACATGC GGGAAACTAC 
ACCTGTGTGG CCAGCAACCA GTACGGCAGC GTCACCAGCC GGAGAGCCAG AGTACAGTTC 
GGCTATCTGG ACATGTTCTC CACAGACGAG CGGGAGGCGG TCTACGTCAA GGAGGGCCAG 
GGGGCGGTTC TTCTGTGTGC CCCGCCTCCA CACTTCCCAG AGGATCTGTC GTTCCGCTGG 
ATGCTGAACG AGTTCCCGGA GTTCATCCCT CTGGACCAGC GGCGCTTCGT CTCTCAGAGC 
ACCGGCAACC TCTACATCTC CACGGTGCGC TCCACCGACA GTGGAAACTA CTCCTGCTTC 
GTCTCCAGCC CTGCCATCGC CAAGAGCGTC TTCAGCAAGT TCATCCCGCT GGTGCCCATC 
GCCGAGCGTT CTCTTCGTAA ATATCCTGCT GATATTAAAG TCAAGTCCCC GGACAGCTGG 
GCTCTGCTGG GTCAGAACAT CACGCTCGAG TGTTTCGCGC TGGGGAACCC GATCCCGCAG 
ATCCGCTGGA GGAAGCTGGA CGGTGTTCTC CCGCCGCTCC GCCATGATGT CAGCATGTCC 
GGCGCTCTGC TGCACCTCTA CAGTCTGCAG TATGAGGACG AGGGGCTGTA CGAGTGTGAG 
GCCGACAACT CCAAGGGCAA AGACTGGCAC AAAACACACC TCTACGTGGA GGGAGCTCCT 
GATTGGCTGG AGCAGATCAG CAGTTCAGAG GTGGACATCG GGGGCGATTA CATCATGTCC 
TGTCAGGCCA GCGGGAAACC CAAACCACAC GTGCACTTCC TGAAGAACGG CCACATGTAC 
ATGAAGGGTC ATGAGGTCCG CTTCTCCAGG CTGGGGTTCG AGGACTCTGG GATGTATCAG 
TGTGTGGCTG AGAACCGTCA CGGTGTGATT CACGCTAACG CTGAGCTGCG GGTGTTCGCC 
AGCGCTCCTT CATTCCAGTA TAACCCAGTT AAACCCAAAC TCCTGGGGGC CAGAAACGGC 
CGGGTGGTGT TCGAATGCAG ACCTCGAGCC GCACCGCGAC CCAACATCAC CTGGAGCAAA 
GGAACAGAAC TCCTGCACAA CTCCAGCAGG ATCTCCATCT GGCTGGACGG CAGTTTAGAG 
CTGCTGAACA TCTCCAAGTC TGACGAGGGG AAGTACACCT GCTTCGCAGA GAACGACCGC 
GGCCGAGCCA ACAGCACTGG ATCACTGTCA ATCACAGACG CCACTAAGAT CACTCTGGCT 
CCGTCGAATG CGGATGTGAG TGTGGGCGAG GACGCTCGTA TGGAGTGTGT GGCGTCTCAT 
GACCCCGGCC TCGACCTCAC CTTCATCTGG AGCCTGGACG GACACACCAT CGACCTGCAG 
CGGGACGCAC AGCACTACCA GCGCAAGATG GACAGTGCGA GCGGGACGTC CAGCTCAGAG 
CTGCTGATCA CACACACACA GCTGAGACAC GCCGGACGCT ACAGCTGCAC CGCACAGACA 
CCTGTGGACA ACACCACTGC ATCTGCAGAG CTGGTGGTCA GAGGTCCCCC AGGGCCCCCT 
GGTGGTGTGC GTGTGGATGA GGTGACGTCT GACAGTGTGA GGGTGCTGTG GAGTCACGGC 
ACTGACAATC TGAGCCCCAT CTCCAGATAC ACCGTCCAGC TCAGAGAATC TGCAGCACAG 
CAGGACTGGA GAGACGCCGC TACCTCCCCA GTGAATGTGG AGGGAAATGC AGAAATGGCC 
ACCGTGGTAA ACCTGCTGCC CTGGACGGAG TATGAGTTCC GGGTCATCGC CACCAACACA 
CTGGGCACCG GGCCGCCCAG CGAACCCTCA CCCAAAACCA CCACTAGAGA AGCCCGGCCG 
ATCGTGGCTC CGTCAGACAT AGGTGGCGGG GGAGGGACCA GCCGAGAGCT CACCATCACC 
TGGACGCCGG TGCAGTCTCA GTATTACTAC GGCAGTAACT TCGGCTACAT CATCGCCTTC 
AAGCCCCATA ATGACCCAGA GTGGCTGCGG GTCACCGTCA CTGACCCAGA GGTGCAGAAA 
TACGTCCACA AAGACCCCAA AATCCCCCCG TCCACACGCT TCGAGGTCAA GATGAAGGCC 
TTCAACAGCC AGGGGGAGGG ACCCTTCAGC AACAGCGCTT TCATATACTC TGCACAGGAC 
GTGCCGGCCG AGGCCCCCAT CATCACAGAA GCGAGGGCTC TGTCTGCCAC TGAAGCGATC 
GTCATCTGGG TGCCTGTGCA GCTGCCGACG GTGGAGAGAT ATCAGGTGCG GTACTGGCGT 
GAGTCTGTAG AGAACGAAGC ATCTGCTCAG CGGGTTCTGG TGTCCAGTCG AGAGAATCAC 
ACACGTCTGG ACAACATGAA GCCCGACTCA CACTACCTGG TGGAGGTGCG CGCGTGTAAC 
GGAGCCGGAT ACGGACCCGC CAGCCAGCGC AACAGGATAT ACACCAAGAA GTCCCCTCCC 
AGTCGTCCTC CTAAGATCAT CAGCACTAAG ATGCACTACA GCGGCAGCTC CATCAACATC 
GCCTGGGAGA AGGTGGAGTC GCTGAACAAC GAGTCAACGG TGGCGGGATA TAAGGTCCTG 
TACCGGCAGC ACGGCCAGCC CAGCGGCACG CTCTACACCA CCGAGAAGCA GTCCATCGAC 
CTGCCCATGA GGAGGGGGGA GTACCTGGTG GAGGTGCGGG CACACAGCGA GGGTGGAGAC 
GGGGCCGTCG CACAAGTGCG CATCACAGGT TCGGCTCCGG CTCCGGCTCT GGCCTCGGCT 
CTGCTGCTGC TGCCGCTCCT CTGGACTCTG ATGCTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination.
Genes to cells : devoted to molecular & cellular mechanisms22(8)723-741(2017 Aug)
Takeuchi M,Inoue C,Goshima A,Nagao Y,Shimizu K,Miyamoto H,Shimizu T,Hashimoto H,Yonemura S,Kawahara A,Hirata Y,Yoshida M,Hibi M

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Individual Neuronal Subtypes Exhibit Diversity in CNS Myelination Mediated by Synaptic Vesicle Release.
Current biology : CB26(11)1447-55(2016 Jun)
Koudelka S,Voas MG,Almeida RG,Baraban M,Soetaert J,Meyer MP,Talbot WS,Lyons DA

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

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cntn1a cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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