Gene Symbol | fbxo48 |
Entrez Gene ID | 103908695 |
Full Name | F-box protein 48 |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » fbxo48 cDNA ORF clone
Gene Symbol | fbxo48 |
Entrez Gene ID | 103908695 |
Full Name | F-box protein 48 |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001328021.1 | NP_001314950.1 | F-box only protein 48 isoform a |
NM_001328024.1 | NP_001314953.1 | F-box only protein 48 isoform a |
NM_001328023.1 | NP_001314952.1 | F-box only protein 48 isoform a |
NM_001328025.1 | NP_001314954.1 | F-box only protein 48 isoform b |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following fbxo48 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the fbxo48 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa06201 | |
Clone ID Related Accession (Same CDS sequence) | NM_001328021.1 , NM_001328024.1 , NM_001328023.1 | |
Accession Version | NM_001328021.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 465bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-08-05 | |
Organism | Danio rerio(zebrafish) | |
Product | F-box only protein 48 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH546124.1, EH556733.1, EH464114.1 and CU929104.21. On Jun 1, 2016 this sequence version replaced XM_009294442.1. Transcript Variant: This variant (1) encodes the longer isoform (a). Variants 1, 2 and 3 all encode isoform a. ##Evidence-Data-START## Transcript exon combination :: GFIL01020182.1, EH438161.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001314950.1 |
CDS | 125..589 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001328021.1 |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa06201 | |
Clone ID Related Accession (Same CDS sequence) | NM_001328021.1 , NM_001328024.1 , NM_001328023.1 | |
Accession Version | NM_001328024.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 465bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-08-05 | |
Organism | Danio rerio(zebrafish) | |
Product | F-box only protein 48 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH546124.1, EH464114.1 and CU929104.21. On Jun 2, 2016 this sequence version replaced XM_009294445.1. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode isoform a. ##Evidence-Data-START## Transcript exon combination :: EH446091.1, GO943990.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA4476737 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001314953.1 |
CDS | 104..568 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001328024.1 |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa06201 | |
Clone ID Related Accession (Same CDS sequence) | NM_001328021.1 , NM_001328024.1 , NM_001328023.1 | |
Accession Version | NM_001328023.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 465bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-08-05 | |
Organism | Danio rerio(zebrafish) | |
Product | F-box only protein 48 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH546124.1, EH445891.1, EH464114.1 and CU929104.21. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 all encode isoform a. ##Evidence-Data-START## Transcript exon combination :: EH445891.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA4476805 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001314952.1 |
CDS | 117..581 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001328023.1 |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa06202 | |
Clone ID Related Accession (Same CDS sequence) | NM_001328025.1 | |
Accession Version | NM_001328025.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 348bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-08-05 | |
Organism | Danio rerio(zebrafish) | |
Product | F-box only protein 48 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH546124.1, EH501007.1, EH464114.1 and CU929104.21. On Jun 2, 2016 this sequence version replaced XM_009294448.1. Transcript Variant: This variant (4) contains an additional internal exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: EH501007.1, EH496083.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001314954.1 |
CDS | 125..472 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001328025.1 |
1 | ATGTCTGTAG AAGGAGCAGC AGCGCCGTCT GCAGGCCAGA AGCTGACCCG GTGGTGTTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |