Gene Symbol | VAR2 |
Entrez Gene ID | 817646 |
Full Name | FtsH extracellular protease family |
Synonyms | F7F1.16,F7F1_16,FTSH2,VARIEGATED 2 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » VAR2 cDNA ORF clone
Gene Symbol | VAR2 |
Entrez Gene ID | 817646 |
Full Name | FtsH extracellular protease family |
Synonyms | F7F1.16,F7F1_16,FTSH2,VARIEGATED 2 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001336312.1 | NP_001323509.1 | FtsH extracellular protease family |
NM_179825.3 | NP_850156.1 | FtsH extracellular protease family |
NM_001336310.1 | NP_001323510.1 | FtsH extracellular protease family |
NM_001336311.1 | NP_001323511.1 | FtsH extracellular protease family |
Arabidopsis thaliana (thale cress) | VAR2 | NP_850156.1 |
Oryza sativa (rice) | Os06g0669400 | NP_001058321.1 |
Arabidopsis thaliana (thale cress) | FTSH8 | NP_563766.3 |
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, Koo HL, Moffat KS, Cronin LA, Shen M, Pai G, Van Aken S, Umayam L, Tallon LJ, Gill JE, Adams MD, Carrera AJ, Creasy TH, Goodman HM, Somerville CR, Copenhaver GP, Preuss D, Nierman WC, White O, Eisen JA, Salzberg SL, Fraser CM, Venter JC
Nature402(6763)761-8(1999 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The initiation of (1)O2 signaling in grana margins depends on EX1 and the ATP-dependent zinc metalloprotease FtsH. As FtsH cleaves also the D1 protein during the disassembly of damaged PSII, EX1- and (1)O2-mediated signaling seems to be not only spatially but also functionally associated with the repair of PSII
Title: Singlet oxygen- and EXECUTER1-mediated signaling is initiated in grana margins and depends on the protease FtsH2.
the thylakoid membrane-bound FtsH5 and FtsH2 have dual functions in the maintenance of photosynthetic complexes.
Title: Thylakoid-Bound FtsH Proteins Facilitate Proper Biosynthesis of Photosystem I.
SVR10 and BPG2 are functionally related with VAR2, likely through their potential roles in regulating chloroplast protein homeostasis.
Title: Mutations in circularly permuted GTPase family genes AtNOA1/RIF1/SVR10 and BPG2 suppress var2-mediated leaf variegation in Arabidopsis thaliana.
The virescent clpR4-3 mutation suppresses leaf variegation of thf1 and var2.
Title: Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis.
The disruption of specific aspects of chloroplast translation, rather than a general impairment in chloroplast translation, suppress var2 variegation and the existence of complex genetic interactions in chloroplast development.
Title: Genetic interactions reveal that specific defects of chloroplast translation are associated with the suppression of var2-mediated leaf variegation.
The following VAR2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the VAR2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb08407 | |
Clone ID Related Accession (Same CDS sequence) | NM_179825.3 , NM_001336310.1 , NM_001336311.1 | |
Accession Version | NM_179825.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2088bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | FtsH extracellular protease family | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_179825.2. |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_850156.1 |
CDS | 132..2219 |
Translation |
Target ORF information:
Target ORF information:
|
NM_179825.3 |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb08407 | |
Clone ID Related Accession (Same CDS sequence) | NM_179825.3 , NM_001336310.1 , NM_001336311.1 | |
Accession Version | NM_001336310.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2088bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | FtsH extracellular protease family | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). COMPLETENESS: incomplete on the 3' end. |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001323510.1 |
CDS | 330..2417 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001336310.1 |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb08407 | |
Clone ID Related Accession (Same CDS sequence) | NM_179825.3 , NM_001336310.1 , NM_001336311.1 | |
Accession Version | NM_001336311.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2088bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | FtsH extracellular protease family | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). COMPLETENESS: incomplete on the 3' end. |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001323511.1 |
CDS | 313..2400 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001336311.1 |
1 | ATGGCAGCTT CATCAGCTTG TCTTGTGGGA AATGGTTTGT CAGTGAACAC AACAACCAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb36190 | |
Clone ID Related Accession (Same CDS sequence) | NM_001336312.1 | |
Accession Version | NM_001336312.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2100bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | FtsH extracellular protease family | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). COMPLETENESS: incomplete on the 3' end. |
1 | ATGAATTTTC AGATGGCAGC TTCATCAGCT TGTCTTGTGG GAAATGGTTT GTCAGTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001323509.1 |
CDS | 251..2350 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001336312.1 |
1 | ATGAATTTTC AGATGGCAGC TTCATCAGCT TGTCTTGTGG GAAATGGTTT GTCAGTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. |