Gene Symbol | SE |
Entrez Gene ID | 817252 |
Full Name | C2H2 zinc-finger protein SERRATE (SE) |
Synonyms | SERRATE,T20P8.15,T20P8_15 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » SE cDNA ORF clone
Gene Symbol | SE |
Entrez Gene ID | 817252 |
Full Name | C2H2 zinc-finger protein SERRATE (SE) |
Synonyms | SERRATE,T20P8.15,T20P8_15 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_128268.3 | NP_565635.1 | C2H2 zinc-finger protein SERRATE (SE) |
Arabidopsis thaliana (thale cress) | SE | NP_565635.1 |
Oryza sativa (rice) | Os08g0517300 | NP_001062242.1 |
Oryza sativa (rice) | Os06g0698859 | NP_001174979.1 |
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, Koo HL, Moffat KS, Cronin LA, Shen M, Pai G, Van Aken S, Umayam L, Tallon LJ, Gill JE, Adams MD, Carrera AJ, Creasy TH, Goodman HM, Somerville CR, Copenhaver GP, Preuss D, Nierman WC, White O, Eisen JA, Salzberg SL, Fraser CM, Venter JC
Nature402(6763)761-8(1999 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Results show that HYL1 and SE directly interact with HIGLE to processes primary transcripts of MIRNA genes into mature miRNAs.
Title: HIGLE is a bifunctional homing endonuclease that directly interacts with HYL1 and SERRATE in Arabidopsis thaliana.
Further analysis revealed that the steady state level of HYL1 protein in plants under osmotic stress is dependent on the SnRK2 kinases. Additionally, our results suggest that the SnRK2 kinases physically associate with the miRNA processing components SE and HYL1 and can phosphorylate these proteins in vitro.
Title: The SnRK2 kinases modulate miRNA accumulation in Arabidopsis.
SERRATE and the nuclear cap-binding protein complex (AtCBC) cooperate in regulation of alternative splicing.
Title: The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
The results suggest that the interactions among SERRATE, DICER-LIKE 1 and RNA are a potential point for regulating pri-miRNA processing.
Title: Dissecting the interactions of SERRATE with RNA and DICER-LIKE 1 in Arabidopsis microRNA precursor processing.
SERRATE, CAP BINDING PROTEIN20 (CBP20), and CBP80 are regulators of lincRNA expression and biogenesis. RT-PCR experiments confirmed these three proteins are also needed for splicing of a small group of intron-containing lincRNAs.
Title: Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis.
The following SE gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SE cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb08108 | |
Clone ID Related Accession (Same CDS sequence) | NM_128268.3 | |
Accession Version | NM_128268.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2163bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | C2H2 zinc-finger protein SERRATE (SE) | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_128268.2. |
1 | ATGGCCGATG TTAATCTTCC TCCGTCTGAT TCCGTCGATA ACCGTCTCCC TGAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_565635.1 |
CDS | 191..2353 |
Translation |
Target ORF information:
Target ORF information:
|
NM_128268.3 |
1 | ATGGCCGATG TTAATCTTCC TCCGTCTGAT TCCGTCGATA ACCGTCTCCC TGAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. |