Gene Symbol | PATR-A |
Entrez Gene ID | 750725 |
Full Name | patr class I histocompatibility antigen, A-126 alpha chain |
Synonyms | CHLA-A126 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-A cDNA ORF clone
Gene Symbol | PATR-A |
Entrez Gene ID | 750725 |
Full Name | patr class I histocompatibility antigen, A-126 alpha chain |
Synonyms | CHLA-A126 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
NM_001009058.3 | NP_001009058.3 | patr class I histocompatibility antigen, A-126 alpha chain precursor |
XM_024357547.1 | XP_024213315.1 | LOW QUALITY PROTEIN: patr class I histocompatibility antigen, A-126 alpha chain |
NM_001009058.4 | NP_001009058.4 | patr class I histocompatibility antigen, A-126 alpha chain precursor |
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence.
Anzai T, Shiina T, Kimura N, Yanagiya K, Kohara S, Shigenari A, Yamagata T, Kulski JK, Naruse TK, Fujimori Y, Fukuzumi Y, Yamazaki M, Tashiro H, Iwamoto C, Umehara Y, Imanishi T, Meyer A, Ikeo K, Gojobori T, Bahram S, Inoko H
Proceedings of the National Academy of Sciences of the United States of America100(13)7708-13(2003 Jun)
Analysis of 5'-end sequences of chimpanzee cDNAs.
Sakate R, Osada N, Hida M, Sugano S, Hayasaka I, Shimohira N, Yanagi S, Suto Y, Hashimoto K, Hirai M
Genome research13(5)1022-6(2003 May)
Molecular and immunological significance of chimpanzee major histocompatibility complex haplotypes for hepatitis C virus immune response and vaccination studies.
Mizukoshi E, Nascimbeni M, Blaustein JB, Mihalik K, Rice CM, Liang TJ, Feinstone SM, Rehermann B
Journal of virology76(12)6093-103(2002 Jun)
New chimpanzee MHC class I alleles cloned by polymerase chain reaction.
MacHida S, Matsui M, Tanoue T, Hayasaka I, Akatsuka T
European journal of immunogenetics : official journal of the British Society for Histocompatibility and Immunogenetics28(3)435-8(2001 Jun)
Genomic analysis of common chimpanzee major histocompatibility complex class I genes.
Adams EJ, Parham P
Immunogenetics53(3)200-8(2001 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PATR-A gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-A cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00304 | |
Clone ID Related Accession (Same CDS sequence) | NM_001009058.4 | |
Accession Version | NM_001009058.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1098bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-11-16 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, A-126 alpha chain precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NBAG03000221.1 and AF168395.1. On Mar 30, 2018 this sequence version replaced NM_001009058.3. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: X13114.1, SRR6713217.5179.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCGTCA TGGCGCCCCG AACCCTCGTC CTGCTACTCT CGGGGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001009058.4 |
CDS | 86..1183 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001009058.4 |
1 | ATGGCCGTCA TGGCGCCCCG AACCCTCGTC CTGCTACTCT CGGGGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc91331 | |
Clone ID Related Accession (Same CDS sequence) | NM_001009058.3 | |
Accession Version | NM_001009058.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1098bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-11-09 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, A-126 alpha chain precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AU296813.1, AF165355.1 and X13113.1. On or before Jul 20, 2016 this sequence version replaced XM_016956691.1, NM_001009058.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: X13113.1, M30678.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCGTCA TGCCGCCCCG AACTCTCCTC CTGCTACTCT CGGGGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001009058.3 |
CDS | 23..1120 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001009058.3 |
1 | ATGGCCGTCA TGCCGCCCCG AACTCTCCTC CTGCTACTCT CGGGGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc107599 | |
Clone ID Related Accession (Same CDS sequence) | XM_024357547.1 | |
Accession Version | XM_024357547.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1323bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | LOW QUALITY PROTEIN: patr class I histocompatibility antigen, A-126 alpha chain | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## |
1 | ATGGATTGGG GAGTCCCAGC CTTGGGGATT CCCCAACTCN NCGCAGTTTC TTTTCTCCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024213315.1 |
CDS | 16..1338 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024357547.1 |
1 | ATGGATTGGG GAGTCCCAGC CTTGGGGATT CCCCAACTCN NCGCAGTTTC TTTTCTCCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. |
Analysis of 5'-end sequences of chimpanzee cDNAs. |
Molecular and immunological significance of chimpanzee major histocompatibility complex haplotypes for hepatitis C virus immune response and vaccination studies. |
New chimpanzee MHC class I alleles cloned by polymerase chain reaction. |
Genomic analysis of common chimpanzee major histocompatibility complex class I genes. |