Gene Symbol | LOC100334281 |
Entrez Gene ID | 100334281 |
Full Name | hemicentin-2 |
Synonyms | CD4-2,CD4L-2,cd4rel1,cd4rel2 |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » LOC100334281 cDNA ORF clone
Gene Symbol | LOC100334281 |
Entrez Gene ID | 100334281 |
Full Name | hemicentin-2 |
Synonyms | CD4-2,CD4L-2,cd4rel1,cd4rel2 |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_017351472.1 | XP_017206961.1 | hemicentin-2 isoform X2 |
XM_021472962.1 | XP_021328637.1 | hemicentin-2 isoform X3 |
NM_001366060.1 | NP_001352989.1 | CD4-2 molecule, tandem duplicate 2 precursor |
XM_005173516.3 | XP_005173573.1 | hemicentin-2 isoform X1 |
XM_009292137.2 | XP_009290412.1 | uncharacterized protein LOC100334281 isoform X3 |
XM_021467070.1 | XP_021322745.1 | hemicentin-1 isoform X1 |
XM_021472961.1 | XP_021328636.1 | hemicentin-2 isoform X2 |
XM_009292138.2 | XP_009290413.1 | uncharacterized protein LOC100334281 isoform X4 |
Identification and characterization of T reg-like cells in zebrafish.
Kasheta M, Painter CA, Moore FE, Lobbardi R, Bryll A, Freiman E, Stachura D, Rogers AB, Houvras Y, Langenau DM, Ceol CJ
The Journal of experimental medicine214(12)3519-3530(2017 Dec)
Zebrafish Regulatory T Cells Mediate Organ-Specific Regenerative Programs.
Hui SP, Sheng DZ, Sugimoto K, Gonzalez-Rajal A, Nakagawa S, Hesselson D, Kikuchi K
Developmental cell43(6)659-672.e5(2017 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100334281 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100334281 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa49940 | |
Clone ID Related Accession (Same CDS sequence) | XM_009292137.2 | |
Accession Version | XM_009292137.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | uncharacterized protein LOC100334281 isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009292137.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009290412.1 |
CDS | 71..1330 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009292137.2 |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa49941 | |
Clone ID Related Accession (Same CDS sequence) | XM_009292138.2 | |
Accession Version | XM_009292138.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1245bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | uncharacterized protein LOC100334281 isoform X4 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009292138.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCTTTT TTCTCCTTCT TGCACTGAGT GTTTCATCTG GGGTGTGTGA TGTGCTTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009290413.1 |
CDS | 141..1385 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009292138.2 |
1 | ATGATCTTTT TTCTCCTTCT TGCACTGAGT GTTTCATCTG GGGTGTGTGA TGTGCTTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa145765 | |
Clone ID Related Accession (Same CDS sequence) | XM_021472961.1 | |
Accession Version | XM_021472961.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1245bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | hemicentin-2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018394956.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTATTTT TTCTCCTTCT TGCACTGAGT GTTTCATCTG GGGTGTGTGA TGTGCTTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021328636.1 |
CDS | 54..1298 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021472961.1 |
1 | ATGCTATTTT TTCTCCTTCT TGCACTGAGT GTTTCATCTG GGGTGTGTGA TGTGCTTTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa159787 | |
Clone ID Related Accession (Same CDS sequence) | NM_001366060.1 | |
Accession Version | NM_001366060.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-03-21 | |
Organism | Danio rerio(zebrafish) | |
Product | CD4-2 molecule, tandem duplicate 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CU467865.7. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: HE983357.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCGCAGAT CTATGAATAT GAAACTTGTC AACAGGATAC AAAACCTCCA TCCAAACGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001352989.1 |
CDS | 104..1651 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001366060.1 |
1 | ATGCGCAGAT CTATGAATAT GAAACTTGTC AACAGGATAC AAAACCTCCA TCCAAACGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa145766 | |
Clone ID Related Accession (Same CDS sequence) | XM_021472962.1 | |
Accession Version | XM_021472962.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2211bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | hemicentin-2 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018394956.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGCAGAT CTATGAATAT GAAACTTGTC AACAGGATAC AAAACCTCCA TCCAAACGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021328637.1 |
CDS | 355..2565 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021472962.1 |
1 | ATGCGCAGAT CTATGAATAT GAAACTTGTC AACAGGATAC AAAACCTCCA TCCAAACGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa149490 | |
Clone ID Related Accession (Same CDS sequence) | XM_021467070.1 | |
Accession Version | XM_021467070.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2781bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | hemicentin-1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.7) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021322745.1 |
CDS | 71..2851 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021467070.1 |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa21195 | |
Clone ID Related Accession (Same CDS sequence) | XM_005173516.3 | |
Accession Version | XM_005173516.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2151bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | hemicentin-2 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005173516.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005173573.1 |
CDS | 71..2221 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005173516.3 |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa55472 | |
Clone ID Related Accession (Same CDS sequence) | XM_017351472.1 | |
Accession Version | XM_017351472.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1488bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | hemicentin-2 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017206961.1 |
CDS | 71..1558 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017351472.1 |
1 | ATGTCAACTT GCAAGATGCT GTTTTTACTC ATTTTAGCAC TGAGTGTTTC ATCTGGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Identification and characterization of T reg-like cells in zebrafish. |
Zebrafish Regulatory T Cells Mediate Organ-Specific Regenerative Programs. |