ORF » Species Summary » Oryza sativa Japonica Group » Reactome

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  • Entrez Gene ID (e.g. 7157)
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Oryza sativa Japonica Group (Japanese rice)

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Fatty acid, triacylglycerol, and ketone body metabolism Synthesis of Ketone Bodies
Cholesterol biosynthesis via lathosterol Synthesis of bile acids and bile salts
Acyl chain remodelling of PG Synthesis of 15-eicosatetraenoic acid derivatives
Sphingolipid de novo biosynthesis Glycosphingolipid metabolism
Integration of energy metabolism The citric acid (TCA) cycle and respiratory electron transport
Metabolism of nucleotides Vitamin B1 (thiamin) metabolism
Metabolism of amino acids and derivatives Branched-chain amino acid catabolism
Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism Serotonin and melatonin biosynthesis
Metabolism of ingested MeSeO2H into MeSeH Metabolism of porphyrins
Ethanol oxidation Glucuronidation
Abacavir transport and metabolism Activation of Matrix Metalloproteinases
TP53 Regulates Transcription of Cell Death Genes RNA Polymerase II Transcription Elongation
Formation of the Early Elongation Complex Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Transcriptional regulation by small RNAs Toll-Like Receptors Cascades
JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 Toll Like Receptor 5 (TLR5) Cascade
Toll Like Receptor 9 (TLR9) Cascade Inflammasomes
Interleukin receptor SHC signaling Interleukin-3, 5 and GM-CSF signaling
Neuronal System Signal transduction by L1
HSF1-dependent transactivation Transport of inorganic cations/anions and amino acids/oligopeptides
Regulation of Glucokinase by Glucokinase Regulatory Protein Iron uptake and transport
Ion transport by P-type ATPases Apoptosis
Cap-dependent Translation Initiation GTP hydrolysis and joining of the 60S ribosomal subunit
SRP-dependent cotranslational protein targeting to membrane Protein folding
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein ER to Golgi Anterograde Transport
SUMO is proteolytically processed Unfolded Protein Response (UPR)
trans-Golgi Network Vesicle Budding Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Homology Directed Repair Processing of DNA double-strand break ends
Nucleotide Excision Repair G1/S Transition
Cyclin E associated events during G1/S transition G1/S-Specific Transcription
Inhibition of replication initiation of damaged DNA by RB1/E2F1 S Phase
DNA strand elongation Mitotic Prophase
DNA Replication Pre-Initiation Regulation of mitotic cell cycle
Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins PI3K Cascade
PKB-mediated events NGF signalling via TRKA from the plasma membrane
Signalling to RAS PI3K/AKT activation
Nuclear Events (kinase and transcription factor activation) MAPK6/MAPK4 signaling
Visual phototransduction Signaling by Retinoic Acid
Hedgehog 'on' state Signaling by PTK6
Digestion of dietary carbohydrate Glucose metabolism
Glycosaminoglycan metabolism Keratan sulfate/keratin metabolism
Keratan sulfate degradation Heparan sulfate/heparin (HS-GAG) metabolism
Inositol phosphate metabolism Ion influx/efflux at host-pathogen interface
Neutrophil degranulation RAB GEFs exchange GTP for GDP on RABs
RET signaling Deubiquitination
rRNA processing in the nucleus and cytosol Regulation of pyruvate dehydrogenase (PDH) complex
TP53 Regulates Transcription of DNA Repair Genes Formation of TC-NER Pre-Incision Complex
Stabilization of p53 Activation of the pre-replicative complex
E2F mediated regulation of DNA replication Polymerase switching
Regulation of DNA replication G2 Phase
APC/C-mediated degradation of cell cycle proteins Chromosome Maintenance
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