Gene Symbol | HMGB1 |
Entrez Gene ID | 824351 |
Full Name | high mobility group B1 |
Synonyms | AtHMGB1,NFD1,NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1,high mobility group B1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
ORF » Species Summary » Arabidopsis thaliana » HMGB1 cDNA ORF clone
Gene Symbol | HMGB1 |
Entrez Gene ID | 824351 |
Full Name | high mobility group B1 |
Synonyms | AtHMGB1,NFD1,NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1,high mobility group B1 |
Gene Type | protein-coding |
Organism | Arabidopsis thaliana(thale cress) |
mRNA | Protein | Name |
---|---|---|
NM_001203133.1 | NP_001190062.1 | high mobility group B1 |
NM_115047.3 | NP_190756.1 | high mobility group B1 |
NM_001084800.2 | NP_001078269.1 | high mobility group B1 |
NM_001339538.1 | NP_001327501.1 | high mobility group B1 |
NM_202684.3 | NP_974413.1 | high mobility group B1 |
Arabidopsis thaliana (thale cress) | HMGB3 | NP_564124.1 |
Arabidopsis thaliana (thale cress) | HMGB1 | NP_974413.1 |
Arabidopsis thaliana (thale cress) | HMGB2 | NP_001077569.1 |
Oryza sativa (rice) | Os06g0728000 | NP_001058640.1 |
Oryza sativa (rice) | Os09g0551600 | NP_001063869.1 |
Arabidopsis thaliana (thale cress) | HMGB5 | NP_195282.1 |
Arabidopsis thaliana (thale cress) | HMGB4 | NP_001077909.1 |
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl?cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdom?nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu?tier F, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L?hnert TH, Nordsiek G, Reichelt J, Scharfe M, Sch?n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw?lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,
Nature408(6814)820-2(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Results show not only HMGB1 was associated with interphase but also with metaphase chromosomes in Arabidopsis.
Title: Paraformaldehyde Fixation May Lead to Misinterpretation of the Subcellular Localization of Plant High Mobility Group Box Proteins.
AtHMGB1 does not affect telomerase activity and AtHMGB1 loss or overexpression does not cause any obvious changes in chromatin architecture.
Title: Role of HMGB proteins in chromatin dynamics and telomere maintenance in Arabidopsis thaliana.
The lack and overexpression of HMGB1 affect certain aspects of plant growth and stress tolerance and it has a marked impact on the transcriptome.
Title: The expression level of the chromatin-associated HMGB1 protein influences growth, stress tolerance, and transcriptome in Arabidopsis.
The subcellular localization of Arabidopsis thaliana HMGA, HMGB1, and HMGB5, reveals that they localize to the cell nucleus. They display a speckled distribution pattern throughout the chromatin of interphase nuclei.
Title: Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus.
The following HMGB1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HMGB1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAb13369 | |
Clone ID Related Accession (Same CDS sequence) | NM_115047.3 , NM_001084800.2 , NM_001339538.1 | |
Accession Version | NM_115047.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 537bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | high mobility group B1 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_115047.2. |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_190756.1 |
CDS | 222..758 |
Translation |
Target ORF information:
Target ORF information:
|
NM_115047.3 |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb13369 | |
Clone ID Related Accession (Same CDS sequence) | NM_115047.3 , NM_001084800.2 , NM_001339538.1 | |
Accession Version | NM_001084800.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 537bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | high mobility group B1 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_001084800.1. |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001078269.1 |
CDS | 156..692 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001084800.2 |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb13369 | |
Clone ID Related Accession (Same CDS sequence) | NM_115047.3 , NM_001084800.2 , NM_001339538.1 | |
Accession Version | NM_001339538.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 537bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | high mobility group B1 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001327501.1 |
CDS | 114..650 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001339538.1 |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb13370 | |
Clone ID Related Accession (Same CDS sequence) | NM_202684.3 | |
Accession Version | NM_202684.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | high mobility group B1 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_202684.2. |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_974413.1 |
CDS | 152..709 |
Translation |
Target ORF information:
Target ORF information:
|
NM_202684.3 |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAb30139 | |
Clone ID Related Accession (Same CDS sequence) | NM_001203133.1 | |
Accession Version | NM_001203133.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 486bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-13 | |
Organism | Arabidopsis thaliana(thale cress) | |
Product | high mobility group B1 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001190062.1 |
CDS | 80..565 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001203133.1 |
1 | ATGAAAACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. |