Gene Symbol | PRP16 |
Entrez Gene ID | 853961 |
Full Name | DEAH-box RNA helicase PRP16 |
Synonyms | PRP23,RNA16 |
Gene Type | protein-coding |
Organism | Saccharomyces cerevisiae S288C |
ORF » Species Summary » Saccharomyces cerevisiae S288C » PRP16 cDNA ORF clone
Gene Symbol | PRP16 |
Entrez Gene ID | 853961 |
Full Name | DEAH-box RNA helicase PRP16 |
Synonyms | PRP23,RNA16 |
Gene Type | protein-coding |
Organism | Saccharomyces cerevisiae S288C |
mRNA | Protein | Name |
---|---|---|
NM_001179876.3 | NP_013012.3 | DEAH-box RNA helicase PRP16 |
Pan troglodytes (chimpanzee) | DHX38 | XP_511101.3 |
Bos taurus (cattle) | DHX38 | NP_001069266.1 |
Mus musculus (house mouse) | Dhx38 | NP_848467.1 |
Danio rerio (zebrafish) | dhx38 | NP_957170.1 |
Saccharomyces cerevisiae (baker's yeast) | PRP16 | NP_013012.3 |
Kluyveromyces lactis | KLLA0A07733g | XP_451344.1 |
Eremothecium gossypii | AGOS_ADR224W | NP_984320.1 |
Oryza sativa (rice) | Os07g0508000 | NP_001059742.1 |
Xenopus tropicalis (tropical clawed frog) | dhx38 | XP_002937626.2 |
DHX38 | XP_001097681.2 | |
Canis lupus familiaris (dog) | DHX38 | XP_005620809.1 |
Gallus gallus (chicken) | DHX38 | NP_001025753.1 |
Caenorhabditis elegans (roundworm) | mog-1 | NP_499212.1 |
Schizosaccharomyces pombe (fission yeast) | prp16 | NP_595890.2 |
Rattus norvegicus (Norway rat) | Dhx38 | NP_001099655.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP008528 | XP_316912.4 |
Homo sapiens (human) | DHX38 | NP_054722.2 |
Drosophila melanogaster (fruit fly) | l(1)G0007 | NP_572947.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_11351 | XP_003713740.1 |
Neurospora crassa | NCU02728 | XP_965113.1 |
Arabidopsis thaliana (thale cress) | EMB3011 | NP_196805.2 |
Life with 6000 genes.
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG
Science (New York, N.Y.)274(5287)546, 563-7(1996 Oct)
Complete DNA sequence of yeast chromosome XI.
Dujon B, Alexandraki D, Andr? B, Ansorge W, Baladron V, Ballesta JP, Banrevi A, Bolle PA, Bolotin-Fukuhara M, Bossier P, Bou G, Boyer J, Bultrago MJ, Cheret G, Colleaux L, Dalgnan-Fornler B, del Rey F, Dlon C, Domdey H, D?sterhoft A, D?sterhus S, Entlan KD, Erfle H, Esteban PF, Feldmann H, Fernandes L, Robo GM, Fritz C, Fukuhara H, Gabel C, Gaillon L, Carcia-Cantalejo JM, Garcia-Ramirez JJ, Gent NE, Ghazvini M, Goffeau A, Gonzal?z A, Grothues D, Guerreiro P, Hegemann J, Hewitt N, Hilger F, Hollenberg CP, Horaitis O, Indge KJ, Jacquier A, James CM, Jauniaux C, Jimenez A, Keuchel H, Kirchrath L, Kleine K, K?tter P, Legrain P, Liebl S, Louis EJ, Maia e Silva A, Marck C, Monnier AL, M?stl D, M?ller S, Obermaier B, Oliver SG, Pallier C, Pascolo S, Pfeiffer F, Philippsen P, Planta RJ, Pohl FM, Pohl TM, P?hlmann R, Portetelle D, Purnelle B, Puzos V, Ramezani Rad M, Rasmussen SW, Remacha M, Revuelta JL, Richard GF, Rieger M, Rodrigues-Pousada C, Rose M, Rupp T, Santos MA, Schwager C, Sensen C, Skala J, Soares H, Sor F, Stegemann J, Tettelin H, Thierry A, Tzermia M, Urrestarazu LA, van Dyck L, Van Vliet-Reedijk JC, Valens M, Vandenbo M, Vilela C, Vissers S, von Wettstein D, Voss H, Wiemann S, Xu G, Zimmermann J, Haasemann M, Becker I, Mewes HW
Nature369(6479)371-8(1994 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
In the process of pre-mRNA splicing, Cwc25 binds tightly to the spliceosome after the reaction and is then removed from the spliceosome, which normally requires Prp16 and ATP hydrolysis, to allow the occurrence of the second reaction.
Title: A central role of Cwc25 in spliceosome dynamics during the catalytic phase of pre-mRNA splicing.
At the catalytic stage of splicing, suboptimal splice sites are repressed by the DEAH-box ATPases Prp16 and Prp22. study shows that these ATPases function further by enabling the spliceosome to search for and utilize alternative branch sites and 3' splice sites.
Title: Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites.
Results indicate that the prp16-302 mutation in Prp16 stabilizes Cwc2 interactions with U6 snRNA and destabilizes Cwc2 interactions with pre-mRNA, indicating antagonistic functions of Cwc2 and Prp16.
Title: Remodeling of U2-U6 snRNA helix I during pre-mRNA splicing by Prp16 and the NineTeen Complex protein Cwc2.
In the absence of the C domain, Yju2-N domain is not stably associated with the spliceosome after lariat formation, and thus bypasses the need for Prp16.
Title: A weak spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing.
NTR complex catalyzes the disassembly of affinity-purified spliceosomes arrested specifically after the ATP-dependent action of DEAH-box Prp2, Prp16, or Prp22 but not at steps before the action of these ATPases or upon their binding to the spliceosome.
Title: Link of NTR-mediated spliceosome disassembly with DEAH-box ATPases Prp2, Prp16, and Prp22.
The following PRP16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PRP16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSi03138 | |
Clone ID Related Accession (Same CDS sequence) | NM_001179876.3 | |
Accession Version | NM_001179876.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3216bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-31 | |
Organism | Saccharomyces cerevisiae S288C | |
Product | DEAH-box RNA helicase PRP16 | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001143). On Jul 30, 2012 this sequence version replaced NM_001179876.2. ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-2-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. |
1 | ATGGGTCATT CGGGGCGTGA GGAAAGGATA AAAGACATAT TTAAGGAACT TACGTCAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_013012.3 |
CDS | 1..3216 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001179876.3 |
1 | ATGGGTCATT CGGGGCGTGA GGAAAGGATA AAAGACATAT TTAAGGAACT TACGTCAAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Life with 6000 genes. |
Complete DNA sequence of yeast chromosome XI. |