Hoxd3 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Hoxd3
Entrez Gene ID	288152
Full Name	homeo box D3
Synonyms	Hox4r6
General protein information	Preferred Names homeo box D3 Names homeobox protein Hox-D3 Homeobox gene D3 homeobox protein R6
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 3 Map Location: 3q23
Summary	mouse homolog is a homeobox transcription factor; may be involved in liver and hematopoietic development [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
XM_008761881.2	XP_008760103.1	homeobox protein Hox-D3 isoform X1
NM_001271038.1	NP_001257967.1	homeobox protein Hox-D3

Pathways from BioSystems

Homologies

Homo sapiens (human)	HOXD3	NP_008829.3
Gallus gallus (chicken)	HOXD3	XP_428765.2
Danio rerio (zebrafish)	hoxd3a	NP_571200.1
Mus musculus (house mouse)	Hoxd3	NP_034598.2
Xenopus tropicalis (tropical clawed frog)	hoxd3	XP_004917786.1
Canis lupus familiaris (dog)	HOXD3	XP_545539.2
Bos taurus (cattle)	HOXD3	XP_005202439.1
Rattus norvegicus (Norway rat)	Hoxd3	NP_001257967.1
Pan troglodytes (chimpanzee)	HOXD3	XP_001153177.1

Gene Ontology
Bibliography

Related articles in PubMed

Altered neuronal lineages in the facial ganglia of Hoxa2 mutant mice.
Yang X, Zhou Y, Barcarse EA, O'Gorman S
Developmental biology314(1)171-88(2008 Feb)

The homeobox transcription factor Hox D3 promotes integrin alpha5beta1 expression and function during angiogenesis.
Boudreau NJ, Varner JA
The Journal of biological chemistry279(6)4862-8(2004 Feb)

HOXD3 regulates expression of JAGGED1, a ligand for Notch receptors.
Taniguchi Y, Sato M, Tanaka O, Sekiguchi M, Inoko H, Kimura M
Nucleic acids research. Supplement (2001)(1)43-4(2001)

Hox group 3 paralogs regulate the development and migration of the thymus, thyroid, and parathyroid glands.
Manley NR, Capecchi MR
Developmental biology195(1)1-15(1998 Mar)

Hox group 3 paralogous genes act synergistically in the formation of somitic and neural crest-derived structures.
Manley NR, Capecchi MR
Developmental biology192(2)274-88(1997 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Hoxd3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Hoxd3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa10062	NM_001271038.1 Latest version!	Rattus norvegicus homeo box D3 (Hoxd3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$223.30 $319.00
ORa10062	XM_008761881.2 Latest version!	Rattus norvegicus homeo box D3 (Hoxd3), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$223.30 $319.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Hoxd3 ( NM_001271038.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001257967.1 Rattus norvegicus homeo box D3 (Hoxd3), mRNA.

Price & Availability↑

CloneID	ORa10062
Clone ID Related Accession (Same CDS sequence)	XM_008761881.2 , NM_001271038.1
Accession Version	NM_001271038.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1299bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-27
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein Hox-D3
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AABR07052559.1. On Aug 28, 2012 this sequence version replaced XM_213633.6. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications.

ATGTTATTTG AGCAGGGTCA GCAGGCCCTG GAGCTTCCTG AGTGCACCAT GCAGAAGGCT 
GCATACTATG AGAACCCAGG ACTCTTTGGA GGCTATGGAT ACAGCAAAGC CACTGATGCA 
TATGGCTATA GCACTCCTCA TCAACCCTAC CCACCCCCTG CTGCTGCCAA CTCCCTGGAC 
AGTGATTACC CAAGTTCTGC CTGCTCCATC CAGAGTTCTG CACCTCTTCG AGCCCCAGCC 
CACAAAGGAG CGGAACTCAA CGGTAGCTGC ATGCGGCCTG GCACTGGGAA CAGCCAGGGT 
GGGGGTGGAG GCAACCAACC TCCTGGCCTG AACTCAGAGC AGCAGCCACC GCAACCTCCC 
CCTCCACCAC CCACCCTGCC CCCATCCTCA CCCACCAATC CCGGAAGCGG AGTGCCTGCC 
AAGAAGACCA AGGGTGGGCC CAATGCTTCT AGCTCTTCCT CTACCATCAG CAAGCAGATC 
TTCCCCTGGA TGAAGGAATC CCGACAGAAC TCAAAGCAGA AGAACAGCTG TGCCACTTCA 
GGAGAGAACT GCGAGGACAA GAGCCCACCG GGCCCGGCAT CCAAGAGGGT GCGCACGGCG 
TACACGAGTG CTCAGCTGGT AGAGCTGGAG AAGGAGTTCC ACTTCAACCG CTACCTGTGC 
CGGCCGCGCC GCGTGGAGAT GGCTAACCTG CTGAACCTCA CCGAACGCCA GATCAAGATC 
TGGTTCCAGA ACCGTCGCAT GAAGTACAAG AAGGACCAGA AGGCCAAGGG CATCCTGCAT 
TCTCCCGCAG GCCAGTCCCC GGAGCGCAGC CCACCTCTTG GAGGAGCGGC GGGCCACGTG 
GCCTACTCCG GCCAGCTGCC GCCCGTGCCC GGCCTGGCCT ACGACGCACC CTCGCCGCCG 
GCTTTCGCTA AATCGCAGCC CAATATGTAC GGCCTGGCCG CCTACACGGC GCCTCTCAGT 
AGCTGCCTGC CGCAGCAGAA GCGTTACGCG GCGCCCGAGT TCGAGCCCCA CCCCATGGCG 
AGCAACGGCG GCGGCTTCGC CAGCGCCAAC CTGCAGGGCA GCCCGGTGTA CGTAGGTGGC 
AACTTCGTCG ACTCCATGGC GCCCGCGTCC GGGCCGGTCT TCAATCTGGG TCACCTCTCG 
CACCCGTCTT CGGCCAGCGT GGACTACAGC TGCGCCGCGC AAATCCCTGG CAACCATCAC 
CACGGACCGT GCGACCCTCA TCCCACCTAC ACAGATCTCT CGGCTCACCA CACGTCTCAG 
GGACGCCTGC CCGAGGCCCC CAAACTGACA CATCTGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001257967.1
CDS	382..1680
Translation	MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKATDAYGYSTPHQPYPPPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGSGVPAKKTKGGPNASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHTSQGRLPEAPKLTHL

Target ORF information:

RefSeq Version	NM_001271038.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus homeo box D3 (Hoxd3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001271038.1

ORF Insert Sequence:

ATGTTATTTG AGCAGGGTCA GCAGGCCCTG GAGCTTCCTG AGTGCACCAT GCAGAAGGCT 
GCATACTATG AGAACCCAGG ACTCTTTGGA GGCTATGGAT ACAGCAAAGC CACTGATGCA 
TATGGCTATA GCACTCCTCA TCAACCCTAC CCACCCCCTG CTGCTGCCAA CTCCCTGGAC 
AGTGATTACC CAAGTTCTGC CTGCTCCATC CAGAGTTCTG CACCTCTTCG AGCCCCAGCC 
CACAAAGGAG CGGAACTCAA CGGTAGCTGC ATGCGGCCTG GCACTGGGAA CAGCCAGGGT 
GGGGGTGGAG GCAACCAACC TCCTGGCCTG AACTCAGAGC AGCAGCCACC GCAACCTCCC 
CCTCCACCAC CCACCCTGCC CCCATCCTCA CCCACCAATC CCGGAAGCGG AGTGCCTGCC 
AAGAAGACCA AGGGTGGGCC CAATGCTTCT AGCTCTTCCT CTACCATCAG CAAGCAGATC 
TTCCCCTGGA TGAAGGAATC CCGACAGAAC TCAAAGCAGA AGAACAGCTG TGCCACTTCA 
GGAGAGAACT GCGAGGACAA GAGCCCACCG GGCCCGGCAT CCAAGAGGGT GCGCACGGCG 
TACACGAGTG CTCAGCTGGT AGAGCTGGAG AAGGAGTTCC ACTTCAACCG CTACCTGTGC 
CGGCCGCGCC GCGTGGAGAT GGCTAACCTG CTGAACCTCA CCGAACGCCA GATCAAGATC 
TGGTTCCAGA ACCGTCGCAT GAAGTACAAG AAGGACCAGA AGGCCAAGGG CATCCTGCAT 
TCTCCCGCAG GCCAGTCCCC GGAGCGCAGC CCACCTCTTG GAGGAGCGGC GGGCCACGTG 
GCCTACTCCG GCCAGCTGCC GCCCGTGCCC GGCCTGGCCT ACGACGCACC CTCGCCGCCG 
GCTTTCGCTA AATCGCAGCC CAATATGTAC GGCCTGGCCG CCTACACGGC GCCTCTCAGT 
AGCTGCCTGC CGCAGCAGAA GCGTTACGCG GCGCCCGAGT TCGAGCCCCA CCCCATGGCG 
AGCAACGGCG GCGGCTTCGC CAGCGCCAAC CTGCAGGGCA GCCCGGTGTA CGTAGGTGGC 
AACTTCGTCG ACTCCATGGC GCCCGCGTCC GGGCCGGTCT TCAATCTGGG TCACCTCTCG 
CACCCGTCTT CGGCCAGCGT GGACTACAGC TGCGCCGCGC AAATCCCTGG CAACCATCAC 
CACGGACCGT GCGACCCTCA TCCCACCTAC ACAGATCTCT CGGCTCACCA CACGTCTCAG 
GGACGCCTGC CCGAGGCCCC CAAACTGACA CATCTGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Hoxd3 ( XM_008761881.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_008760103.1 Rattus norvegicus homeo box D3 (Hoxd3), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa10062
Clone ID Related Accession (Same CDS sequence)	XM_008761881.2 , NM_001271038.1
Accession Version	XM_008761881.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1299bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	homeobox protein Hox-D3 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008761881.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTTATTTG AGCAGGGTCA GCAGGCCCTG GAGCTTCCTG AGTGCACCAT GCAGAAGGCT 
GCATACTATG AGAACCCAGG ACTCTTTGGA GGCTATGGAT ACAGCAAAGC CACTGATGCA 
TATGGCTATA GCACTCCTCA TCAACCCTAC CCACCCCCTG CTGCTGCCAA CTCCCTGGAC 
AGTGATTACC CAAGTTCTGC CTGCTCCATC CAGAGTTCTG CACCTCTTCG AGCCCCAGCC 
CACAAAGGAG CGGAACTCAA CGGTAGCTGC ATGCGGCCTG GCACTGGGAA CAGCCAGGGT 
GGGGGTGGAG GCAACCAACC TCCTGGCCTG AACTCAGAGC AGCAGCCACC GCAACCTCCC 
CCTCCACCAC CCACCCTGCC CCCATCCTCA CCCACCAATC CCGGAAGCGG AGTGCCTGCC 
AAGAAGACCA AGGGTGGGCC CAATGCTTCT AGCTCTTCCT CTACCATCAG CAAGCAGATC 
TTCCCCTGGA TGAAGGAATC CCGACAGAAC TCAAAGCAGA AGAACAGCTG TGCCACTTCA 
GGAGAGAACT GCGAGGACAA GAGCCCACCG GGCCCGGCAT CCAAGAGGGT GCGCACGGCG 
TACACGAGTG CTCAGCTGGT AGAGCTGGAG AAGGAGTTCC ACTTCAACCG CTACCTGTGC 
CGGCCGCGCC GCGTGGAGAT GGCTAACCTG CTGAACCTCA CCGAACGCCA GATCAAGATC 
TGGTTCCAGA ACCGTCGCAT GAAGTACAAG AAGGACCAGA AGGCCAAGGG CATCCTGCAT 
TCTCCCGCAG GCCAGTCCCC GGAGCGCAGC CCACCTCTTG GAGGAGCGGC GGGCCACGTG 
GCCTACTCCG GCCAGCTGCC GCCCGTGCCC GGCCTGGCCT ACGACGCACC CTCGCCGCCG 
GCTTTCGCTA AATCGCAGCC CAATATGTAC GGCCTGGCCG CCTACACGGC GCCTCTCAGT 
AGCTGCCTGC CGCAGCAGAA GCGTTACGCG GCGCCCGAGT TCGAGCCCCA CCCCATGGCG 
AGCAACGGCG GCGGCTTCGC CAGCGCCAAC CTGCAGGGCA GCCCGGTGTA CGTAGGTGGC 
AACTTCGTCG ACTCCATGGC GCCCGCGTCC GGGCCGGTCT TCAATCTGGG TCACCTCTCG 
CACCCGTCTT CGGCCAGCGT GGACTACAGC TGCGCCGCGC AAATCCCTGG CAACCATCAC 
CACGGACCGT GCGACCCTCA TCCCACCTAC ACAGATCTCT CGGCTCACCA CACGTCTCAG 
GGACGCCTGC CCGAGGCCCC CAAACTGACA CATCTGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_008760103.1
CDS	139..1437
Translation	MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKATDAYGYSTPHQPYPPPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGSGVPAKKTKGGPNASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHTSQGRLPEAPKLTHL

Target ORF information:

RefSeq Version	XM_008761881.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus homeo box D3 (Hoxd3), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_008761881.2

ORF Insert Sequence:

ATGTTATTTG AGCAGGGTCA GCAGGCCCTG GAGCTTCCTG AGTGCACCAT GCAGAAGGCT 
GCATACTATG AGAACCCAGG ACTCTTTGGA GGCTATGGAT ACAGCAAAGC CACTGATGCA 
TATGGCTATA GCACTCCTCA TCAACCCTAC CCACCCCCTG CTGCTGCCAA CTCCCTGGAC 
AGTGATTACC CAAGTTCTGC CTGCTCCATC CAGAGTTCTG CACCTCTTCG AGCCCCAGCC 
CACAAAGGAG CGGAACTCAA CGGTAGCTGC ATGCGGCCTG GCACTGGGAA CAGCCAGGGT 
GGGGGTGGAG GCAACCAACC TCCTGGCCTG AACTCAGAGC AGCAGCCACC GCAACCTCCC 
CCTCCACCAC CCACCCTGCC CCCATCCTCA CCCACCAATC CCGGAAGCGG AGTGCCTGCC 
AAGAAGACCA AGGGTGGGCC CAATGCTTCT AGCTCTTCCT CTACCATCAG CAAGCAGATC 
TTCCCCTGGA TGAAGGAATC CCGACAGAAC TCAAAGCAGA AGAACAGCTG TGCCACTTCA 
GGAGAGAACT GCGAGGACAA GAGCCCACCG GGCCCGGCAT CCAAGAGGGT GCGCACGGCG 
TACACGAGTG CTCAGCTGGT AGAGCTGGAG AAGGAGTTCC ACTTCAACCG CTACCTGTGC 
CGGCCGCGCC GCGTGGAGAT GGCTAACCTG CTGAACCTCA CCGAACGCCA GATCAAGATC 
TGGTTCCAGA ACCGTCGCAT GAAGTACAAG AAGGACCAGA AGGCCAAGGG CATCCTGCAT 
TCTCCCGCAG GCCAGTCCCC GGAGCGCAGC CCACCTCTTG GAGGAGCGGC GGGCCACGTG 
GCCTACTCCG GCCAGCTGCC GCCCGTGCCC GGCCTGGCCT ACGACGCACC CTCGCCGCCG 
GCTTTCGCTA AATCGCAGCC CAATATGTAC GGCCTGGCCG CCTACACGGC GCCTCTCAGT 
AGCTGCCTGC CGCAGCAGAA GCGTTACGCG GCGCCCGAGT TCGAGCCCCA CCCCATGGCG 
AGCAACGGCG GCGGCTTCGC CAGCGCCAAC CTGCAGGGCA GCCCGGTGTA CGTAGGTGGC 
AACTTCGTCG ACTCCATGGC GCCCGCGTCC GGGCCGGTCT TCAATCTGGG TCACCTCTCG 
CACCCGTCTT CGGCCAGCGT GGACTACAGC TGCGCCGCGC AAATCCCTGG CAACCATCAC 
CACGGACCGT GCGACCCTCA TCCCACCTAC ACAGATCTCT CGGCTCACCA CACGTCTCAG 
GGACGCCTGC CCGAGGCCCC CAAACTGACA CATCTGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Altered neuronal lineages in the facial ganglia of Hoxa2 mutant mice.
Developmental biology314(1)171-88(2008 Feb)
Yang X,Zhou Y,Barcarse EA,O'Gorman S

The homeobox transcription factor Hox D3 promotes integrin alpha5beta1 expression and function during angiogenesis.
The Journal of biological chemistry279(6)4862-8(2004 Feb)
Boudreau NJ,Varner JA

HOXD3 regulates expression of JAGGED1, a ligand for Notch receptors.
Nucleic acids research. Supplement (2001)(1)43-4(2001)
Taniguchi Y,Sato M,Tanaka O,Sekiguchi M,Inoko H,Kimura M

Hox group 3 paralogs regulate the development and migration of the thymus, thyroid, and parathyroid glands.
Developmental biology195(1)1-15(1998 Mar)
Manley NR,Capecchi MR

Hox group 3 paralogous genes act synergistically in the formation of somitic and neural crest-derived structures.
Developmental biology192(2)274-88(1997 Dec)
Manley NR,Capecchi MR