Rnf40 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Rnf40
Entrez Gene ID	266712
Full Name	ring finger protein 40
General protein information	Preferred Names ring finger protein 40 Names E3 ubiquitin-protein ligase BRE1B BRE1-B RING-type E3 ubiquitin transferase BRE1B protein staring ring finger protein 40, E3 ubiquitin protein ligase staring protein syntaxin-1-interacting RING finger protein
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 1 Map Location: 1q37
Summary	RING finger protein that binds syntaxin 1; acts as a ubiquitin protein ligase to facilitate syntaxin 1 ubiquitination and degradation [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
XM_006230219.3	XP_006230281.1	E3 ubiquitin-protein ligase BRE1B isoform X1
NM_153471.1	NP_703201.1	E3 ubiquitin-protein ligase BRE1B

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Rnf40	NP_758485.2
Homo sapiens (human)	RNF40	NP_055586.1
	RNF40	XP_001102375.2
Pan troglodytes (chimpanzee)	RNF40	XP_003315121.1
Rattus norvegicus (Norway rat)	Rnf40	NP_703201.1
Xenopus tropicalis (tropical clawed frog)	rnf40	XP_004918162.1
Drosophila melanogaster (fruit fly)	Bre1	NP_647989.2
Canis lupus familiaris (dog)	RNF40	XP_005621328.1
Bos taurus (cattle)	RNF40	NP_001193381.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP007335	XP_308493.4
Caenorhabditis elegans (roundworm)	rfp-1	NP_001022700.1

Gene Ontology
Bibliography

Related articles in PubMed

The ATM signaling network in development and disease.
Stracker TH, Roig I, Knobel PA, Marjanovi? M
Frontiers in genetics437(2013)

E3 ubiquitin-protein ligases in rat kidney collecting duct: response to vasopressin stimulation and withdrawal.
Lee YJ, Lee JE, Choi HJ, Lim JS, Jung HJ, Baek MC, Fr?ki?r J, Nielsen S, Kwon TH
American journal of physiology. Renal physiology301(4)F883-96(2011 Oct)

Defining the membrane proteome of NK cells.
Ghosh D, Lippert D, Krokhin O, Cortens JP, Wilkins JA
Journal of mass spectrometry : JMS45(1)1-25(2010 Jan)

CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3'-end processing.
Pirngruber J, Shchebet A, Schreiber L, Shema E, Minsky N, Chapman RD, Eick D, Aylon Y, Oren M, Johnsen SA
EMBO reports10(8)894-900(2009 Aug)

RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells.
Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, Shilatifard A, Muir TW, Roeder RG
Cell137(3)459-71(2009 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

a novel E3 ubiquitin-protein ligase that targets syntaxin 1 for degradation
Title: Staring, a novel E3 ubiquitin-protein ligase that targets syntaxin 1 for degradation.

The following Rnf40 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Rnf40 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa03063	NM_153471.1 Latest version!	Rattus norvegicus ring finger protein 40 (Rnf40), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$559.30 $799.00
ORa23404	XM_006230219.3 Latest version!	Rattus norvegicus ring finger protein 40 (Rnf40), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$559.30 $799.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Rnf40 ( NM_153471.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_703201.1 Rattus norvegicus ring finger protein 40 (Rnf40), mRNA.

Price & Availability↑

CloneID	ORa03063
Clone ID Related Accession (Same CDS sequence)	NM_153471.1
Accession Version	NM_153471.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3009bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-23
Organism	Rattus norvegicus(Norway rat)
Product	E3 ubiquitin-protein ligase BRE1B
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF352815.1. ##Evidence-Data-START## Transcript exon combination :: AF352815.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END##

ATGTCTGGCC TCAGCAACAA GCGCGCCGCC GGCGACGGGG GCTCAGGACC CCCAGAGAAG 
AAGCTGAACC GCGAGGAGAA GACTACGACC ACTCTAATCG AGCCCATTCG TCTCGGGGGC 
ATTTCTTCCA CGGAGGAGAT GGATTCCAAG GTGCTGCAGT TTAAGAATAA GAAGCTGGCG 
GAGCGGCTGG AGCAGCGGCA AGCCTGTGAG GACGAGCTCC GGGAGAGAAT TGAGAAATTG 
GAGAAGAGGC AGGCCACGGA CGATGCCACA CTCCTCATCG TCAACCGCTA CTGGGCCCAG 
CTGGATGAAA CTGTAGAAGC CCTTCTCCAG TGCTACGAGA ACCAGAGGGA GCTGTCTTCA 
TCAGGGACAG AGGTGCCTGG GTGCCAAGAG GGCCTAACCC GTGATGTGAT CCCTCGAACA 
GATCCAGGGA CATCAGATCT GAGGGAACCA CTGCCGATGC AGTTCCGAGC CCCTCTCAGT 
GAGCCAGCCT TGGCTTTTGT GGTGGCACTG GGCGCCAGCA GCTGTGAGGA AGTAGAGCTG 
CAGCTGCAGG GTCGCATGGA ATTCTCCAAG GCTGCTGTGT CTCGGGTGGT AGAGGCCTCG 
GACCGCCTAC AGCGTCAGGT GGAAGAACTC TGTCAGCGAG TATACAGCCG GGGGGACAGT 
GAGGCGCCCG GGGAGGTGGC ACGGGCACGC ACCCGGGAAC TAGGCAGAGA GAACCGTAGG 
CTACAGGACT TGGCCACTCA GCTGCAGGAG AAGCACCACC GCATCTCGTT GGAGTACTCT 
GAGCTCCAAG ACAAAGTGAC ATCGACGGAG ACCAAGGTCC TAGAGATGGA GACAACAGTG 
GAGGACTTAC AGTGGGACAT CGAGAAGCTG CGCAAGCGAG AACAGAAGCT CAATAAGCAC 
TTGGCAGAGG CCTTGGAGCA GCTCAACTCT GGCTACTATG TGTCTGGGAG CTCCACGGGC 
TTTCAGGGAG GCCAGATTAC ACTTAGCATG CAGAAGTTTG AGATGTTGAA TGCAGAGCTG 
GAAGAAAATC AGGAATTGGC CAATAGCCGA ATGGCAGAGC TCGAGAAGTT ACAGGCTGAG 
CTTCAGGGGG CTGTTCGGAC CAATGAACGT CTCAAGGTGG CCCTGCGAAG CCTTCCTGAG 
GAGGTCGTTC GTGAGACGGG GGAGTACCGC ATGCTGCAGG CCCAGTTCTC ACTGCTCTAC 
AATGAGTCTT TGCAAGTGAA GACCCAGCTA GATGAGGCCC GGGGACTGCT GCTGGCCTCC 
AAGAACTCCC ACTTGAGACA CATCGAACAT ATGGAGAGCG ATGAGTTGGG GCTGCAGAAG 
AAGCTGCGCA CAGAAGTTAT CCAGCTGGAA GACACCCTGG CCCAGGTACG CAAGGAGTAC 
GAGATGCTGC GCATTGAGTT TGAGCAGAAC CTTGCGGCCA ACGAGCAGGC TGGGCCTATC 
AACCGTGAAA TGCGCCACCT GATTAGCAGC CTCCAGAACC ACAATCACCA GCTAAAAGGA 
GATGCCCAGC GATATAAGCG GAAACTTCGA GAAGTACAGG CTGAGATTGG TAAACTCCGG 
GCACAGGCCA GCGGCTCTTC CCACTGCGGC CCCAACTTGA GCCACCCTGA TGACTCTGGC 
CTCAATGCCC TTGCCCCAGG GAAAGAAGAT AGTGGGCCTG GCCCTGGAGG CACCCCTGAC 
AGCAAGAAGG AGTTGGCTTT AGTGGCGGGA GCTACGTCTG TTGCTTCTTC CGTAAAGAAA 
GAGGAGCTGG TCTCCTCCGA AGATGATGCC CAGGCCCTAG CCCCTGGAAC CCAGGGCTTG 
CCCTCCCGGG GCCGAGAACC TGAGGCCAGA CCCAAGCGAG AACTTCGGGA ACGGGAAGGG 
CCTAGCCTGG GACCCCCACC TGCAGCCTCC ACTCTGTCCA GGGCTGATCG AGAAAAGGCC 
AAGGCAGAGG AAGCCAGGAG GAAGGAATCA GAACTGCTCA AAGGTCTCCG AGCAGAGCTC 
AAGAAGGCCC AGGAAAGCCA GAAGGAGATG AAGCTGCTGC TGGACATGTA CAAGTCCGCA 
CCCAAGGAGC AGCGGGATAA GGTGCAACTC ATGGCAGCTG AACGGAAGGC CAAGGCCGAG 
GTGGATGAGC TTCGGAGCCG CATCCGAGAC CTGGAAGAGA GAGACCGAAG AGAAAGCAAG 
AAGATTGCCG ATGAGGATGC CCTGCGGCGG ATCCGGCAGG CAGAAGAGCA GATTGAACAC 
TTGCAACGCA AATTGGGTGC GACCAAGCAG GAGGAAGAGG CACTGCTGTC GGAGATGGAT 
GTGACAGGTC AAGCCTTTGA AGACATGCAG GAGCAAAACG GGCGGCTGCT CCAGCAGTTA 
CGGGAAAAGG ATGACGCCAA CTTTAAGCTC ATGTCAGAGA GGATCAAGGC CAACCAGATT 
CACAAGCTGC TCCGAGAAGA GAAGGACGAG TTGGGCGAGC AGGTTCTTGG CCTTAAGTCC 
CAGGTGGATG CCCAGCTGTT GACAGTCCAG AAGCTTGAGG AAAAGGAGCG GGCTCTGCAG 
GGCAGCCTTG GGGGTGTCGA GAAGGAGTTG ACATTGCGCA GCCAGGCCCT GGAGCTTAAT 
AAGAGAAAGG CTGTAGAAGC AGCCCAGTTG GCTGAGGACC TGAAGGTGCA GTTGGAGCAC 
GTGCAGACTC GGCTTCGAGA GATCCAGCCC TGCCTGGCAG AGAGCCGGGC TGCCCGGGAG 
AAAGAGAGCT TCAACCTCAA GAGAGCTCAG GAGGACATTT CCCGGCTGCG GCGCAAACTA 
GAGAAACAGC GGAAAGTAGA AGTTTATGCA GATGCGGATG AGATCCTGCA GGAAGAGATC 
AAGGAGTACA AGGCCCGGCT GACCTGCCCC TGCTGTAACA CCCGCAAGAA GGACGCTGTG 
CTTACCAAGT GCTTCCACGT CTTCTGCTTT GAATGCGTGC GGGGCCGCTA TGAGGCCCGC 
CAGAGGAAGT GTCCCAAGTG CAACGCTGCC TTTGGTGCCC ACGACTTCCA CCGTGTGTAC 
ATCAGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_703201.1
CDS	93..3101
Translation	MSGLSNKRAAGDGGSGPPEKKLNREEKTTTTLIEPIRLGGISSTEEMDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLQCYENQRELSSSGTEVPGCQEGLTRDVIPRTDPGTSDLREPLPMQFRAPLSEPALAFVVALGASSCEEVELQLQGRMEFSKAAVSRVVEASDRLQRQVEELCQRVYSRGDSEAPGEVARARTRELGRENRRLQDLATQLQEKHHRISLEYSELQDKVTSTETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSTGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLASKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSSHCGPNLSHPDDSGLNALAPGKEDSGPGPGGTPDSKKELALVAGATSVASSVKKEELVSSEDDAQALAPGTQGLPSRGREPEARPKRELREREGPSLGPPPAASTLSRADREKAKAEEARRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRDLEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS

Target ORF information:

RefSeq Version	NM_153471.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus ring finger protein 40 (Rnf40), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_153471.1

ORF Insert Sequence:

ATGTCTGGCC TCAGCAACAA GCGCGCCGCC GGCGACGGGG GCTCAGGACC CCCAGAGAAG 
AAGCTGAACC GCGAGGAGAA GACTACGACC ACTCTAATCG AGCCCATTCG TCTCGGGGGC 
ATTTCTTCCA CGGAGGAGAT GGATTCCAAG GTGCTGCAGT TTAAGAATAA GAAGCTGGCG 
GAGCGGCTGG AGCAGCGGCA AGCCTGTGAG GACGAGCTCC GGGAGAGAAT TGAGAAATTG 
GAGAAGAGGC AGGCCACGGA CGATGCCACA CTCCTCATCG TCAACCGCTA CTGGGCCCAG 
CTGGATGAAA CTGTAGAAGC CCTTCTCCAG TGCTACGAGA ACCAGAGGGA GCTGTCTTCA 
TCAGGGACAG AGGTGCCTGG GTGCCAAGAG GGCCTAACCC GTGATGTGAT CCCTCGAACA 
GATCCAGGGA CATCAGATCT GAGGGAACCA CTGCCGATGC AGTTCCGAGC CCCTCTCAGT 
GAGCCAGCCT TGGCTTTTGT GGTGGCACTG GGCGCCAGCA GCTGTGAGGA AGTAGAGCTG 
CAGCTGCAGG GTCGCATGGA ATTCTCCAAG GCTGCTGTGT CTCGGGTGGT AGAGGCCTCG 
GACCGCCTAC AGCGTCAGGT GGAAGAACTC TGTCAGCGAG TATACAGCCG GGGGGACAGT 
GAGGCGCCCG GGGAGGTGGC ACGGGCACGC ACCCGGGAAC TAGGCAGAGA GAACCGTAGG 
CTACAGGACT TGGCCACTCA GCTGCAGGAG AAGCACCACC GCATCTCGTT GGAGTACTCT 
GAGCTCCAAG ACAAAGTGAC ATCGACGGAG ACCAAGGTCC TAGAGATGGA GACAACAGTG 
GAGGACTTAC AGTGGGACAT CGAGAAGCTG CGCAAGCGAG AACAGAAGCT CAATAAGCAC 
TTGGCAGAGG CCTTGGAGCA GCTCAACTCT GGCTACTATG TGTCTGGGAG CTCCACGGGC 
TTTCAGGGAG GCCAGATTAC ACTTAGCATG CAGAAGTTTG AGATGTTGAA TGCAGAGCTG 
GAAGAAAATC AGGAATTGGC CAATAGCCGA ATGGCAGAGC TCGAGAAGTT ACAGGCTGAG 
CTTCAGGGGG CTGTTCGGAC CAATGAACGT CTCAAGGTGG CCCTGCGAAG CCTTCCTGAG 
GAGGTCGTTC GTGAGACGGG GGAGTACCGC ATGCTGCAGG CCCAGTTCTC ACTGCTCTAC 
AATGAGTCTT TGCAAGTGAA GACCCAGCTA GATGAGGCCC GGGGACTGCT GCTGGCCTCC 
AAGAACTCCC ACTTGAGACA CATCGAACAT ATGGAGAGCG ATGAGTTGGG GCTGCAGAAG 
AAGCTGCGCA CAGAAGTTAT CCAGCTGGAA GACACCCTGG CCCAGGTACG CAAGGAGTAC 
GAGATGCTGC GCATTGAGTT TGAGCAGAAC CTTGCGGCCA ACGAGCAGGC TGGGCCTATC 
AACCGTGAAA TGCGCCACCT GATTAGCAGC CTCCAGAACC ACAATCACCA GCTAAAAGGA 
GATGCCCAGC GATATAAGCG GAAACTTCGA GAAGTACAGG CTGAGATTGG TAAACTCCGG 
GCACAGGCCA GCGGCTCTTC CCACTGCGGC CCCAACTTGA GCCACCCTGA TGACTCTGGC 
CTCAATGCCC TTGCCCCAGG GAAAGAAGAT AGTGGGCCTG GCCCTGGAGG CACCCCTGAC 
AGCAAGAAGG AGTTGGCTTT AGTGGCGGGA GCTACGTCTG TTGCTTCTTC CGTAAAGAAA 
GAGGAGCTGG TCTCCTCCGA AGATGATGCC CAGGCCCTAG CCCCTGGAAC CCAGGGCTTG 
CCCTCCCGGG GCCGAGAACC TGAGGCCAGA CCCAAGCGAG AACTTCGGGA ACGGGAAGGG 
CCTAGCCTGG GACCCCCACC TGCAGCCTCC ACTCTGTCCA GGGCTGATCG AGAAAAGGCC 
AAGGCAGAGG AAGCCAGGAG GAAGGAATCA GAACTGCTCA AAGGTCTCCG AGCAGAGCTC 
AAGAAGGCCC AGGAAAGCCA GAAGGAGATG AAGCTGCTGC TGGACATGTA CAAGTCCGCA 
CCCAAGGAGC AGCGGGATAA GGTGCAACTC ATGGCAGCTG AACGGAAGGC CAAGGCCGAG 
GTGGATGAGC TTCGGAGCCG CATCCGAGAC CTGGAAGAGA GAGACCGAAG AGAAAGCAAG 
AAGATTGCCG ATGAGGATGC CCTGCGGCGG ATCCGGCAGG CAGAAGAGCA GATTGAACAC 
TTGCAACGCA AATTGGGTGC GACCAAGCAG GAGGAAGAGG CACTGCTGTC GGAGATGGAT 
GTGACAGGTC AAGCCTTTGA AGACATGCAG GAGCAAAACG GGCGGCTGCT CCAGCAGTTA 
CGGGAAAAGG ATGACGCCAA CTTTAAGCTC ATGTCAGAGA GGATCAAGGC CAACCAGATT 
CACAAGCTGC TCCGAGAAGA GAAGGACGAG TTGGGCGAGC AGGTTCTTGG CCTTAAGTCC 
CAGGTGGATG CCCAGCTGTT GACAGTCCAG AAGCTTGAGG AAAAGGAGCG GGCTCTGCAG 
GGCAGCCTTG GGGGTGTCGA GAAGGAGTTG ACATTGCGCA GCCAGGCCCT GGAGCTTAAT 
AAGAGAAAGG CTGTAGAAGC AGCCCAGTTG GCTGAGGACC TGAAGGTGCA GTTGGAGCAC 
GTGCAGACTC GGCTTCGAGA GATCCAGCCC TGCCTGGCAG AGAGCCGGGC TGCCCGGGAG 
AAAGAGAGCT TCAACCTCAA GAGAGCTCAG GAGGACATTT CCCGGCTGCG GCGCAAACTA 
GAGAAACAGC GGAAAGTAGA AGTTTATGCA GATGCGGATG AGATCCTGCA GGAAGAGATC 
AAGGAGTACA AGGCCCGGCT GACCTGCCCC TGCTGTAACA CCCGCAAGAA GGACGCTGTG 
CTTACCAAGT GCTTCCACGT CTTCTGCTTT GAATGCGTGC GGGGCCGCTA TGAGGCCCGC 
CAGAGGAAGT GTCCCAAGTG CAACGCTGCC TTTGGTGCCC ACGACTTCCA CCGTGTGTAC 
ATCAGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Rnf40 ( XM_006230219.3 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006230281.1 Rattus norvegicus ring finger protein 40 (Rnf40), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa23404
Clone ID Related Accession (Same CDS sequence)	XM_006230219.3
Accession Version	XM_006230219.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3024bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	E3 ubiquitin-protein ligase BRE1B isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006230219.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCTGGCC TCAGCAACAA GCGCGCCGCC GGCGACGGGG GCTCAGGACC CCCAGAGAAG 
AAGCTGAACC GCGAGGAGAA GACTACGACC ACTCTAATCG AGCCCATTCG TCTCGGGGGC 
ATTTCTTCCA CGGAGGAGAT GGATTCCAAG GTGCTGCAGT TTAAGAATAA GAAGCTGGCG 
GAGCGGCTGG AGCAGCGGCA AGCCTGTGAG GACGAGCTCC GGGAGAGAAT TGAGAAATTG 
GAGAAGAGGC AGGCCACGGA CGATGCCACA CTCCTCATCG TCAACCGCTA CTGGGCCCAG 
CTGGATGAAA CTGTAGAAGC CCTTCTCCAG TGCTACGAGA ACCAGAGGGA GCTGTCTTCA 
TCAGGGACAG AGGTGCCTGG GTGCCAAGAG GGCCTAACCC GTGATGTGAT CCCTCGAACA 
GATCCAGGGA CATCAGATCT GAGGGAACCA CTGCCGATGC AGTTCCGAGC CCCTCTCAGT 
GAGCCAGCCT TGGCTTTTGT GGTGGCACTG GGCGCCAGCA GCTGTGAGGA AGTAGAGCTG 
CAGCTGCAGG GTCGCATGGA ATTCTCCAAG GCTGCTGTGT CTCGGGTGGT AGAGGCCTCG 
GACCGCCTAC AGCGTCAGGT GGAAGAACTC TGTCAGCGAG TATACAGCCG GGGCTCTGCA 
TTCTCAGGGG ACAGTGAGGC GCCCGGGGAG GTGGCACGGG CACGCACCCG GGAACTAGGC 
AGAGAGAACC GTAGGCTACA GGACTTGGCC ACTCAGCTGC AGGAGAAGCA CCACCGCATC 
TCGTTGGAGT ACTCTGAGCT CCAAGACAAA GTGACATCGA CGGAGACCAA GGTCCTAGAG 
ATGGAGACAA CAGTGGAGGA CTTACAGTGG GACATCGAGA AGCTGCGCAA GCGAGAACAG 
AAGCTCAATA AGCACTTGGC AGAGGCCTTG GAGCAGCTCA ACTCTGGCTA CTATGTGTCT 
GGGAGCTCCA CGGGCTTTCA GGGAGGCCAG ATTACACTTA GCATGCAGAA GTTTGAGATG 
TTGAATGCAG AGCTGGAAGA AAATCAGGAA TTGGCCAATA GCCGAATGGC AGAGCTCGAG 
AAGCTACAGG CTGAGCTTCA GGGGGCTGTT CGGACCAATG AACGTCTCAA GGTGGCCCTG 
CGAAGCCTTC CTGAGGAGGT CGTTCGTGAG ACGGGGGAGT ACCGCATGCT GCAGGCCCAG 
TTCTCACTGC TCTACAATGA GTCTTTGCAA GTGAAGACCC AGCTAGATGA GGCCCGGGGA 
CTGCTGCTGG CCTCCAAGAA CTCCCACTTG AGACACATCG AACATATGGA GAGCGATGAG 
TTGGGGCTGC AGAAGAAGCT GCGCACAGAA GTTATCCAGC TGGAAGACAC CCTGGCCCAG 
GTACGCAAGG AGTACGAGAT GCTGCGCATT GAGTTTGAGC AGAACCTTGC GGCCAACGAG 
CAGGCTGGGC CTATCAACCG TGAAATGCGC CACCTGATTA GCAGCCTCCA GAACCACAAT 
CACCAGCTAA AAGGAGATGC CCAGCGATAT AAGCGGAAAC TTCGAGAAGT ACAGGCTGAG 
ATTGGTAAAC TCCGGGCACA GGCCAGCGGC TCTTCCCACT GCGGCCCCAA CTTGAGCCAC 
CCTGATGACT CTGGCCTCAA TGCCCTTGCC CCAGGGAAAG AAGATAGTGG GCCTGGCCCT 
GGAGGCACCC CTGACAGCAA GAAGGAGTTG GCTTTAGTGG CGGGAGCTAC GTCTGTTGCT 
TCTTCCGTAA AGAAAGAGGA GCTGGTCTCC TCCGAAGATG ATGCCCAGGC CCTAGCCCCT 
GGAACCCAGG GCTTGCCCTC CCGGGGCCGA GAACCTGAGG CCAGACCCAA GCGAGAACTT 
CGGGAACGGG AAGGGCCTAG CCTGGGACCC CCACCTGCAG CCTCCACTCT GTCCAGGGCT 
GATCGAGAAA AGGCCAAGGC AGAGGAAGCC AGGAGGAAGG AATCAGAACT GCTCAAAGGT 
CTCCGAGCAG AGCTCAAGAA GGCCCAGGAA AGCCAGAAGG AGATGAAGCT GCTGCTGGAC 
ATGTACAAGT CCGCACCCAA GGAGCAGCGG GATAAGGTGC AACTCATGGC AGCTGAACGG 
AAGGCCAAGG CCGAGGTGGA TGAGCTTCGG AGCCGCATCC GAGACCTGGA AGAGAGAGAC 
CGAAGAGAAA GCAAGAAGAT TGCCGATGAG GATGCCCTGC GGCGGATCCG GCAGGCAGAA 
GAGCAGATTG AACACTTGCA ACGCAAATTG GGTGCGACCA AGCAGGAGGA AGAGGCACTG 
CTGTCGGAGA TGGATGTGAC AGGTCAAGCC TTTGAAGACA TGCAGGAGCA AAACGGGCGG 
CTGCTCCAGC AGTTACGGGA AAAGGATGAC GCCAACTTTA AGCTCATGTC AGAGAGGATC 
AAGGCCAACC AGATTCACAA GCTGCTCCGA GAAGAGAAGG ACGAGTTGGG CGAGCAGGTT 
CTTGGCCTTA AGTCCCAGGT GGATGCCCAG CTGTTGACAG TCCAGAAGCT TGAGGAAAAG 
GAGCGGGCTC TGCAGGGCAG CCTTGGGGGT GTCGAGAAGG AGTTGACATT GCGCAGCCAG 
GCCCTGGAGC TTAATAAGAG AAAGGCTGTA GAAGCAGCCC AGTTGGCTGA GGACCTGAAG 
GTGCAGTTGG AGCACGTGCA GACTCGGCTT CGAGAGATCC AGCCCTGCCT GGCAGAGAGC 
CGGGCTGCCC GGGAGAAAGA GAGCTTCAAC CTCAAGAGAG CTCAGGAGGA CATTTCCCGG 
CTGCGGCGCA AACTAGAGAA ACAGCGGAAA GTAGAAGTTT ATGCAGATGC GGATGAGATC 
CTGCAGGAGG AGATCAAGGA GTACAAGGCC CGGCTGACCT GCCCCTGCTG TAACACCCGC 
AAGAAGGACG CTGTGCTTAC CAAGTGCTTC CACGTCTTCT GCTTTGAATG TGTGCGGGGC 
CGCTATGAGG CCCGCCAGAG GAAGTGTCCC AAGTGCAACG CTGCCTTTGG TGCCCACGAC 
TTCCACCGTG TGTACATCAG CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006230281.1
CDS	165..3188
Translation	MSGLSNKRAAGDGGSGPPEKKLNREEKTTTTLIEPIRLGGISSTEEMDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLQCYENQRELSSSGTEVPGCQEGLTRDVIPRTDPGTSDLREPLPMQFRAPLSEPALAFVVALGASSCEEVELQLQGRMEFSKAAVSRVVEASDRLQRQVEELCQRVYSRGSAFSGDSEAPGEVARARTRELGRENRRLQDLATQLQEKHHRISLEYSELQDKVTSTETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSTGFQGGQITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLASKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSSHCGPNLSHPDDSGLNALAPGKEDSGPGPGGTPDSKKELALVAGATSVASSVKKEELVSSEDDAQALAPGTQGLPSRGREPEARPKRELREREGPSLGPPPAASTLSRADREKAKAEEARRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRDLEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS

Target ORF information:

RefSeq Version	XM_006230219.3
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus ring finger protein 40 (Rnf40), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006230219.3

ORF Insert Sequence:

ATGTCTGGCC TCAGCAACAA GCGCGCCGCC GGCGACGGGG GCTCAGGACC CCCAGAGAAG 
AAGCTGAACC GCGAGGAGAA GACTACGACC ACTCTAATCG AGCCCATTCG TCTCGGGGGC 
ATTTCTTCCA CGGAGGAGAT GGATTCCAAG GTGCTGCAGT TTAAGAATAA GAAGCTGGCG 
GAGCGGCTGG AGCAGCGGCA AGCCTGTGAG GACGAGCTCC GGGAGAGAAT TGAGAAATTG 
GAGAAGAGGC AGGCCACGGA CGATGCCACA CTCCTCATCG TCAACCGCTA CTGGGCCCAG 
CTGGATGAAA CTGTAGAAGC CCTTCTCCAG TGCTACGAGA ACCAGAGGGA GCTGTCTTCA 
TCAGGGACAG AGGTGCCTGG GTGCCAAGAG GGCCTAACCC GTGATGTGAT CCCTCGAACA 
GATCCAGGGA CATCAGATCT GAGGGAACCA CTGCCGATGC AGTTCCGAGC CCCTCTCAGT 
GAGCCAGCCT TGGCTTTTGT GGTGGCACTG GGCGCCAGCA GCTGTGAGGA AGTAGAGCTG 
CAGCTGCAGG GTCGCATGGA ATTCTCCAAG GCTGCTGTGT CTCGGGTGGT AGAGGCCTCG 
GACCGCCTAC AGCGTCAGGT GGAAGAACTC TGTCAGCGAG TATACAGCCG GGGCTCTGCA 
TTCTCAGGGG ACAGTGAGGC GCCCGGGGAG GTGGCACGGG CACGCACCCG GGAACTAGGC 
AGAGAGAACC GTAGGCTACA GGACTTGGCC ACTCAGCTGC AGGAGAAGCA CCACCGCATC 
TCGTTGGAGT ACTCTGAGCT CCAAGACAAA GTGACATCGA CGGAGACCAA GGTCCTAGAG 
ATGGAGACAA CAGTGGAGGA CTTACAGTGG GACATCGAGA AGCTGCGCAA GCGAGAACAG 
AAGCTCAATA AGCACTTGGC AGAGGCCTTG GAGCAGCTCA ACTCTGGCTA CTATGTGTCT 
GGGAGCTCCA CGGGCTTTCA GGGAGGCCAG ATTACACTTA GCATGCAGAA GTTTGAGATG 
TTGAATGCAG AGCTGGAAGA AAATCAGGAA TTGGCCAATA GCCGAATGGC AGAGCTCGAG 
AAGCTACAGG CTGAGCTTCA GGGGGCTGTT CGGACCAATG AACGTCTCAA GGTGGCCCTG 
CGAAGCCTTC CTGAGGAGGT CGTTCGTGAG ACGGGGGAGT ACCGCATGCT GCAGGCCCAG 
TTCTCACTGC TCTACAATGA GTCTTTGCAA GTGAAGACCC AGCTAGATGA GGCCCGGGGA 
CTGCTGCTGG CCTCCAAGAA CTCCCACTTG AGACACATCG AACATATGGA GAGCGATGAG 
TTGGGGCTGC AGAAGAAGCT GCGCACAGAA GTTATCCAGC TGGAAGACAC CCTGGCCCAG 
GTACGCAAGG AGTACGAGAT GCTGCGCATT GAGTTTGAGC AGAACCTTGC GGCCAACGAG 
CAGGCTGGGC CTATCAACCG TGAAATGCGC CACCTGATTA GCAGCCTCCA GAACCACAAT 
CACCAGCTAA AAGGAGATGC CCAGCGATAT AAGCGGAAAC TTCGAGAAGT ACAGGCTGAG 
ATTGGTAAAC TCCGGGCACA GGCCAGCGGC TCTTCCCACT GCGGCCCCAA CTTGAGCCAC 
CCTGATGACT CTGGCCTCAA TGCCCTTGCC CCAGGGAAAG AAGATAGTGG GCCTGGCCCT 
GGAGGCACCC CTGACAGCAA GAAGGAGTTG GCTTTAGTGG CGGGAGCTAC GTCTGTTGCT 
TCTTCCGTAA AGAAAGAGGA GCTGGTCTCC TCCGAAGATG ATGCCCAGGC CCTAGCCCCT 
GGAACCCAGG GCTTGCCCTC CCGGGGCCGA GAACCTGAGG CCAGACCCAA GCGAGAACTT 
CGGGAACGGG AAGGGCCTAG CCTGGGACCC CCACCTGCAG CCTCCACTCT GTCCAGGGCT 
GATCGAGAAA AGGCCAAGGC AGAGGAAGCC AGGAGGAAGG AATCAGAACT GCTCAAAGGT 
CTCCGAGCAG AGCTCAAGAA GGCCCAGGAA AGCCAGAAGG AGATGAAGCT GCTGCTGGAC 
ATGTACAAGT CCGCACCCAA GGAGCAGCGG GATAAGGTGC AACTCATGGC AGCTGAACGG 
AAGGCCAAGG CCGAGGTGGA TGAGCTTCGG AGCCGCATCC GAGACCTGGA AGAGAGAGAC 
CGAAGAGAAA GCAAGAAGAT TGCCGATGAG GATGCCCTGC GGCGGATCCG GCAGGCAGAA 
GAGCAGATTG AACACTTGCA ACGCAAATTG GGTGCGACCA AGCAGGAGGA AGAGGCACTG 
CTGTCGGAGA TGGATGTGAC AGGTCAAGCC TTTGAAGACA TGCAGGAGCA AAACGGGCGG 
CTGCTCCAGC AGTTACGGGA AAAGGATGAC GCCAACTTTA AGCTCATGTC AGAGAGGATC 
AAGGCCAACC AGATTCACAA GCTGCTCCGA GAAGAGAAGG ACGAGTTGGG CGAGCAGGTT 
CTTGGCCTTA AGTCCCAGGT GGATGCCCAG CTGTTGACAG TCCAGAAGCT TGAGGAAAAG 
GAGCGGGCTC TGCAGGGCAG CCTTGGGGGT GTCGAGAAGG AGTTGACATT GCGCAGCCAG 
GCCCTGGAGC TTAATAAGAG AAAGGCTGTA GAAGCAGCCC AGTTGGCTGA GGACCTGAAG 
GTGCAGTTGG AGCACGTGCA GACTCGGCTT CGAGAGATCC AGCCCTGCCT GGCAGAGAGC 
CGGGCTGCCC GGGAGAAAGA GAGCTTCAAC CTCAAGAGAG CTCAGGAGGA CATTTCCCGG 
CTGCGGCGCA AACTAGAGAA ACAGCGGAAA GTAGAAGTTT ATGCAGATGC GGATGAGATC 
CTGCAGGAGG AGATCAAGGA GTACAAGGCC CGGCTGACCT GCCCCTGCTG TAACACCCGC 
AAGAAGGACG CTGTGCTTAC CAAGTGCTTC CACGTCTTCT GCTTTGAATG TGTGCGGGGC 
CGCTATGAGG CCCGCCAGAG GAAGTGTCCC AAGTGCAACG CTGCCTTTGG TGCCCACGAC 
TTCCACCGTG TGTACATCAG CTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The ATM signaling network in development and disease.
Frontiers in genetics437(2013)
Stracker TH,Roig I,Knobel PA,Marjanovi? M

E3 ubiquitin-protein ligases in rat kidney collecting duct: response to vasopressin stimulation and withdrawal.
American journal of physiology. Renal physiology301(4)F883-96(2011 Oct)
Lee YJ,Lee JE,Choi HJ,Lim JS,Jung HJ,Baek MC,Fr?ki?r J,Nielsen S,Kwon TH

Defining the membrane proteome of NK cells.
Journal of mass spectrometry : JMS45(1)1-25(2010 Jan)
Ghosh D,Lippert D,Krokhin O,Cortens JP,Wilkins JA

CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3'-end processing.
EMBO reports10(8)894-900(2009 Aug)
Pirngruber J,Shchebet A,Schreiber L,Shema E,Minsky N,Chapman RD,Eick D,Aylon Y,Oren M,Johnsen SA

RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells.
Cell137(3)459-71(2009 May)
Kim J,Guermah M,McGinty RK,Lee JS,Tang Z,Milne TA,Shilatifard A,Muir TW,Roeder RG

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Rnf40 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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