Gene Symbol | DDX39B |
Entrez Gene ID | 463180 |
Full Name | DExD-box helicase 39B |
Synonyms | BAT1,UAP56 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » DDX39B cDNA ORF clone
Gene Symbol | DDX39B |
Entrez Gene ID | 463180 |
Full Name | DExD-box helicase 39B |
Synonyms | BAT1,UAP56 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_009450852.2 | XP_009449127.2 | spliceosome RNA helicase DDX39B isoform X2 |
XM_009450850.2 | XP_009449125.2 | spliceosome RNA helicase DDX39B isoform X1 |
NM_001114163.1 | NP_001107635.1 | spliceosome RNA helicase DDX39B |
XM_009450853.2 | XP_009449128.2 | spliceosome RNA helicase DDX39B isoform X2 |
XM_009450854.2 | XP_009449129.2 | spliceosome RNA helicase DDX39B isoform X2 |
Rattus norvegicus (Norway rat) | Ddx39b | NP_579834.2 |
Danio rerio (zebrafish) | bat1 | NP_957237.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009075 | XP_319825.4 |
Oryza sativa (rice) | Os01g0550000 | NP_001043298.1 |
Homo sapiens (human) | DDX39B | NP_004631.1 |
Canis lupus familiaris (dog) | DDX39B | NP_001014399.1 |
Pan troglodytes (chimpanzee) | DDX39B | NP_001107635.1 |
DDX39B | NP_001040608.1 | |
Kluyveromyces lactis | KLLA0E21935g | XP_454944.1 |
Arabidopsis thaliana (thale cress) | AT5G11170 | NP_568244.2 |
Xenopus tropicalis (tropical clawed frog) | ddx39b | NP_989072.1 |
Bos taurus (cattle) | DDX39B | NP_001028801.1 |
Mus musculus (house mouse) | Ddx39b | NP_001239386.1 |
Drosophila melanogaster (fruit fly) | Hel25E | NP_723089.1 |
Schizosaccharomyces pombe (fission yeast) | uap56 | NP_594261.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_02806 | XP_003720935.1 |
Neurospora crassa | NCU09076 | XP_964893.2 |
Saccharomyces cerevisiae (baker's yeast) | SUB2 | NP_010199.1 |
Eremothecium gossypii | AGOS_ADR260C | NP_984356.1 |
Oryza sativa (rice) | Os01g0549700 | NP_001043297.1 |
Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity.
Shiina T, Ota M, Shimizu S, Katsuyama Y, Hashimoto N, Takasu M, Anzai T, Kulski JK, Kikkawa E, Naruse T, Kimura N, Yanagiya K, Watanabe A, Hosomichi K, Kohara S, Iwamoto C, Umehara Y, Meyer A, Wanner V, Sano K, Macquin C, Ikeo K, Tokunaga K, Gojobori T, Inoko H, Bahram S
Genetics173(3)1555-70(2006 Jul)
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence.
Anzai T, Shiina T, Kimura N, Yanagiya K, Kohara S, Shigenari A, Yamagata T, Kulski JK, Naruse TK, Fujimori Y, Fukuzumi Y, Yamazaki M, Tashiro H, Iwamoto C, Umehara Y, Imanishi T, Meyer A, Ikeo K, Gojobori T, Bahram S, Inoko H
Proceedings of the National Academy of Sciences of the United States of America100(13)7708-13(2003 Jun)
Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man.
Kulski JK, Shiina T, Anzai T, Kohara S, Inoko H
Immunological reviews19095-122(2002 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following DDX39B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DDX39B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc29019 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450852.2 , NM_001114163.1 , XM_009450853.2 , XM_009450854.2 | |
Accession Version | NM_001114163.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-23 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | spliceosome RNA helicase DDX39B | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB210170.1. On or before Feb 2, 2008 this sequence version replaced XM_001151690.1, XM_518897.2, XM_001152069.1, XM_001151883.1, XM_001151942.1, XM_001152000.1, XM_001152130.1, XM_001152248.1, XM_001151749.1, XM_001152189.1, XM_001151371.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03854167 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001107635.1 |
CDS | 1..1287 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001114163.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29019 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450852.2 , NM_001114163.1 , XM_009450853.2 , XM_009450854.2 | |
Accession Version | XM_009450852.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | spliceosome RNA helicase DDX39B isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450852.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449127.2 |
CDS | 327..1613 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450852.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29019 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450852.2 , NM_001114163.1 , XM_009450853.2 , XM_009450854.2 | |
Accession Version | XM_009450853.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | spliceosome RNA helicase DDX39B isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450853.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449128.2 |
CDS | 557..1843 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450853.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29019 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450852.2 , NM_001114163.1 , XM_009450853.2 , XM_009450854.2 | |
Accession Version | XM_009450854.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | spliceosome RNA helicase DDX39B isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450854.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449129.2 |
CDS | 197..1483 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450854.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc85933 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450850.2 | |
Accession Version | XM_009450850.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1401bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450850.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTGTCCT CGGCGCCATT GTGTTCGTTT TGCTCTCTTC TTCCAATGGG TTCTTCTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449125.2 |
CDS | 188..1588 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450850.2 |
1 | ATGGTGTCCT CGGCGCCATT GTGTTCGTTT TGCTCTCTTC TTCCAATGGG TTCTTCTCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. |
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. |
Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. |