Gene Symbol | PATR-DQB1 |
Entrez Gene ID | 462594 |
Full Name | major histocompatibility complex, class II, DQ beta 1 |
Synonyms | Patr-DRB1,mhc-DRB |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-DQB1 cDNA ORF clone
Gene Symbol | PATR-DQB1 |
Entrez Gene ID | 462594 |
Full Name | major histocompatibility complex, class II, DQ beta 1 |
Synonyms | Patr-DRB1,mhc-DRB |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
NM_001271071.2 | NP_001258000.2 | major histocompatibility complex, class II, DQ beta 1 precursor |
XM_009450847.3 | XP_009449122.2 | major histocompatibility complex, class II, DQ beta 1 isoform X1 |
XM_009450847.2 | XP_009449122.1 | major histocompatibility complex, class II, DQ beta 1 isoform X1 |
NM_001271071.1 | NP_001258000.1 | major histocompatibility complex, class II, DQ beta 1 precursor |
XM_009450848.2 | XP_009449123.1 | major histocompatibility complex, class II, DQ beta 1 isoform X2 |
XM_009450848.3 | XP_009449123.2 | major histocompatibility complex, class II, DQ beta 1 isoform X2 |
The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts.
de Groot NG, Heijmans CM, de Groot N, Doxiadis GG, Otting N, Bontrop RE
Molecular immunology47(2-3)381-9(2009 Dec)
Characterisation of four non-human primate Mhc-DQB1 alleles.
de Groot NG, Otting N, Doxiadis GG, Antunes SM, Bontrop RE
Tissue antigens52(5)497-9(1998 Nov)
Mhc-DQB repertoire variation in hominoid and Old World primate species.
Otting N, Kenter M, van Weeren P, Jonker M, Bontrop RE
Journal of immunology (Baltimore, Md. : 1950)149(2)461-70(1992 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PATR-DQB1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-DQB1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00754 | |
Clone ID Related Accession (Same CDS sequence) | NM_001271071.1 | |
Accession Version | NM_001271071.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-20 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AACZ04022817.1. On Sep 1, 2012 this sequence version replaced XM_001165493.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03735000 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001258000.1 |
CDS | 107..907 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001271071.1 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39851 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450847.2 | |
Accession Version | XM_009450847.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006473.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450847.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449122.1 |
CDS | 73..873 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450847.2 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39852 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450848.2 | |
Accession Version | XM_009450848.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006473.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450848.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449123.1 |
CDS | 102..902 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450848.2 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc110398 | |
Clone ID Related Accession (Same CDS sequence) | NM_001271071.2 | |
Accession Version | NM_001271071.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-28 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NBAG03000221.1. On Jun 29, 2018 this sequence version replaced NM_001271071.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMN01120809, SAMN02045700 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001258000.2 |
CDS | 107..907 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001271071.2 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc106846 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450847.3 | |
Accession Version | XM_009450847.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_009450847.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449122.2 |
CDS | 73..873 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450847.3 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc106847 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450848.3 | |
Accession Version | XM_009450848.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DQ beta 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_009450848.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449123.2 |
CDS | 102..902 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450848.3 |
1 | ATGCTGTGTC TGAAGCTCCC TGGAGTCTCC TGCATGACAG CACTGACAGT GACACTGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. |
Characterisation of four non-human primate Mhc-DQB1 alleles. |
Mhc-DQB repertoire variation in hominoid and Old World primate species. |