1700013H16RIK cDNA ORF clone, Mus musculus(House mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	1700013H16RIK
Entrez Gene ID	75514
Full Name	RIKEN cDNA 1700013H16 gene
Synonyms	Slx2,Xlr6
General protein information	Preferred Names RIKEN cDNA 1700013H16 gene Names synaptonemal complex protein 3-like SYCP3-like X-linked 2
Gene Type	protein-coding
Organism	Mus musculus(House mouse)
Genome	Chromosome: X Map Location: X\|X A5

mRNA and Protein(s)

mRNA	Protein	Name
NM_001200013.1	NP_001186942.1	synaptonemal complex protein 3-like
XM_006535361.3	XP_006535424.1	synaptonemal complex protein 3-like isoform X1
XM_006535361.2	XP_006535424.1	synaptonemal complex protein 3-like isoform X2

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	1700013H16Rik	NP_001186942.1
Rattus norvegicus (Norway rat)	Fam9b	XP_006257198.1

Gene Ontology
Bibliography

Related articles in PubMed

Trim27 interacts with Slx2, is associated with meiotic processes during spermatogenesis.
Zhuang XJ, Tang WH, Feng X, Liu CY, Zhu JL, Yan J, Liu DF, Liu P, Qiao J
Cell cycle (Georgetown, Tex.)15(19)2576-2584(2016 Oct)

SLX2 interacting with BLOS2 is differentially expressed during mouse oocyte meiotic maturation.
Zhuang XJ, Shi YQ, Xu B, Chen L, Tang WH, Huang J, Lian Y, Liu P, Qiao J
Cell cycle (Georgetown, Tex.)13(14)2231-7(2014)

SYCP3-like X-linked 2 is expressed in meiotic germ cells and interacts with synaptonemal complex central element protein 2 and histone acetyltransferase TIP60.
Shi YQ, Zhuang XJ, Xu B, Hua J, Liao SY, Shi Q, Cooke HJ, Han C
Gene527(1)352-9(2013 Sep)

HORMAD1-dependent checkpoint/surveillance mechanism eliminates asynaptic oocytes.
Kogo H, Tsutsumi M, Ohye T, Inagaki H, Abe T, Kurahashi H
Genes to cells : devoted to molecular & cellular mechanisms17(6)439-54(2012 Jun)

Characterization of a novel mouse gene encoding an SYCP3-like protein that relocalizes from the XY body to the nucleolus during prophase of male meiosis I.
Tsutsumi M, Kogo H, Kowa-Sugiyama H, Inagaki H, Ohye T, Kurahashi H
Biology of reproduction85(1)165-71(2011 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Trim27 connecting Slx2 may regulate meiotic processes in multiple ways by influencing XY body formation and germ cell proliferation during spermatogenesis.
Title: Trim27 interacts with Slx2, is associated with meiotic processes during spermatogenesis.

SLX2 might be a novel gametogenesis-related protein that could play multiple roles in regulation of meiotic processes including synaptonemal complex assembly and chromosome segregation.
Title: SLX2 interacting with BLOS2 is differentially expressed during mouse oocyte meiotic maturation.

SLX2 interacts with synaptonemal complex central element protein 2 (SYCE2), an important component of synaptonemal complex.
Title: SYCP3-like X-linked 2 is expressed in meiotic germ cells and interacts with synaptonemal complex central element protein 2 and histone acetyltransferase TIP60.

accumulates at the XY body of early pachytene to midpachytene spermatocytes
Title: Characterization of a novel mouse gene encoding an SYCP3-like protein that relocalizes from the XY body to the nucleolus during prophase of male meiosis I.

The following 1700013H16RIK gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the 1700013H16RIK cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OMu56070	XM_006535361.3 Latest version!	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$69.30 $99.00
OMu02409	NM_001200013.1 Latest version!	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$139.30 $199.00
View Old Accession Versions >>
OMu56070	XM_006535361.2	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$69.30 $99.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

1700013H16RIK ( XM_006535361.3 ) cDNA ORF clone, Mus musculus(House mouse) -> XP_006535424.1 Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OMu56070
Clone ID Related Accession (Same CDS sequence)	XM_006535361.3 , XM_006535361.2
Accession Version	XM_006535361.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 462bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-07
Organism	Mus musculus(house mouse)
Product	synaptonemal complex protein 3-like isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000086.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006535361.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCTTGGAA GAATTGGAGT TGACATTAAC CGTGCTCTTA GTGCTAAGAG ACAAAGAATG 
GAGACAACTG CCAGACAGTC TTTTGAGGGA GTTGAGCAGA AAATGAAAGA AGTTTGGAAC 
TCTCATGAAG ATGCAATGGC ACAGCTTAAT GAAGAGTCTG CTCAGGCATT TGCAAATCTG 
TTTGAGCAAT GGAATGAGGA TTTTAAGAAA TTCCGAGAAC AACATGAGAA ACTTGTGAAT 
GATTTTAAGC AACAGGAGAA GATTTTTCAA CGAACTAGAT TTGTTCAGAA CCAGAGAATT 
AGAACAATTA AAGAAATACA TGAACAATTC TTACAGAAAT TGGAAGACCT GGAGAGCAAG 
AATGATGATC TGCTTACTAG AACACAAAAT GAACTTAAGG ATGAAATTAA TGATCTGCAG 
AAAAAAATTT TGAGAGAATC TGAGGAGTCT ACGCTCTTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006535424.1
CDS	290..751
Translation	MLGRIGVDINRALSAKRQRMETTARQSFEGVEQKMKEVWNSHEDAMAQLNEESAQAFANLFEQWNEDFKKFREQHEKLVNDFKQQEKIFQRTRFVQNQRIRTIKEIHEQFLQKLEDLESKNDDLLTRTQNELKDEINDLQKKILRESEESTLF

Target ORF information:

RefSeq Version	XM_006535361.3
Organism	Mus musculus(house mouse)
Definition	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006535361.3

ORF Insert Sequence:

ATGCTTGGAA GAATTGGAGT TGACATTAAC CGTGCTCTTA GTGCTAAGAG ACAAAGAATG 
GAGACAACTG CCAGACAGTC TTTTGAGGGA GTTGAGCAGA AAATGAAAGA AGTTTGGAAC 
TCTCATGAAG ATGCAATGGC ACAGCTTAAT GAAGAGTCTG CTCAGGCATT TGCAAATCTG 
TTTGAGCAAT GGAATGAGGA TTTTAAGAAA TTCCGAGAAC AACATGAGAA ACTTGTGAAT 
GATTTTAAGC AACAGGAGAA GATTTTTCAA CGAACTAGAT TTGTTCAGAA CCAGAGAATT 
AGAACAATTA AAGAAATACA TGAACAATTC TTACAGAAAT TGGAAGACCT GGAGAGCAAG 
AATGATGATC TGCTTACTAG AACACAAAAT GAACTTAAGG ATGAAATTAA TGATCTGCAG 
AAAAAAATTT TGAGAGAATC TGAGGAGTCT ACGCTCTTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

1700013H16RIK ( XM_006535361.2 ) cDNA ORF clone, Mus musculus(House mouse) -> XP_006535424.1 Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X2, mRNA.

Price & Availability↑

CloneID	OMu56070
Clone ID Related Accession (Same CDS sequence)	XM_006535361.3 , XM_006535361.2
Accession Version	XM_006535361.2	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 462bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-02-08
Organism	Mus musculus(House mouse)
Product	synaptonemal complex protein 3-like isoform X2
Comment

ATGCTTGGAA GAATTGGAGT TGACATTAAC CGTGCTCTTA GTGCTAAGAG ACAAAGAATG 
GAGACAACTG CCAGACAGTC TTTTGAGGGA GTTGAGCAGA AAATGAAAGA AGTTTGGAAC 
TCTCATGAAG ATGCAATGGC ACAGCTTAAT GAAGAGTCTG CTCAGGCATT TGCAAATCTG 
TTTGAGCAAT GGAATGAGGA TTTTAAGAAA TTCCGAGAAC AACATGAGAA ACTTGTGAAT 
GATTTTAAGC AACAGGAGAA GATTTTTCAA CGAACTAGAT TTGTTCAGAA CCAGAGAATT 
AGAACAATTA AAGAAATACA TGAACAATTC TTACAGAAAT TGGAAGACCT GGAGAGCAAG 
AATGATGATC TGCTTACTAG AACACAAAAT GAACTTAAGG ATGAAATTAA TGATCTGCAG 
AAAAAAATTT TGAGAGAATC TGAGGAGTCT ACGCTCTTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006535424.1
Translation	MLGRIGVDINRALSAKRQRMETTARQSFEGVEQKMKEVWNSHEDAMAQLNEESAQAFANLFEQWNEDFKKFREQHEKLVNDFKQQEKIFQRTRFVQNQRIRTIKEIHEQFLQKLEDLESKNDDLLTRTQNELKDEINDLQKKILRESEESTLF

Target ORF information:

RefSeq Version	XM_006535361.2
Organism	Mus musculus(House mouse)
Definition	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006535361.2

ORF Insert Sequence:

ATGCTTGGAA GAATTGGAGT TGACATTAAC CGTGCTCTTA GTGCTAAGAG ACAAAGAATG 
GAGACAACTG CCAGACAGTC TTTTGAGGGA GTTGAGCAGA AAATGAAAGA AGTTTGGAAC 
TCTCATGAAG ATGCAATGGC ACAGCTTAAT GAAGAGTCTG CTCAGGCATT TGCAAATCTG 
TTTGAGCAAT GGAATGAGGA TTTTAAGAAA TTCCGAGAAC AACATGAGAA ACTTGTGAAT 
GATTTTAAGC AACAGGAGAA GATTTTTCAA CGAACTAGAT TTGTTCAGAA CCAGAGAATT 
AGAACAATTA AAGAAATACA TGAACAATTC TTACAGAAAT TGGAAGACCT GGAGAGCAAG 
AATGATGATC TGCTTACTAG AACACAAAAT GAACTTAAGG ATGAAATTAA TGATCTGCAG 
AAAAAAATTT TGAGAGAATC TGAGGAGTCT ACGCTCTTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

1700013H16RIK ( NM_001200013.1 ) cDNA ORF clone, Mus musculus(House mouse) -> NP_001186942.1 Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), mRNA.

Price & Availability↑

CloneID	OMu02409
Clone ID Related Accession (Same CDS sequence)	NM_001200013.1
Accession Version	NM_001200013.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 876bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-05-28
Organism	Mus musculus(house mouse)
Product	synaptonemal complex protein 3-like
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL691513.13 and AK005953.1. On Jan 7, 2011 this sequence version replaced XM_135430.4. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK005953.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END##

ATGTTTCCCC GTGGAAGAAG GGACCCTGAA GAATTTAAAA GCACCCCAGA GGACCCTGAA 
GAACCTGAAA GCACCACAAG GGACCCTGGA GGACTTGAAA GCACCCCAGG GGACCCTGAA 
GGATTTGAAA GCACCCCAGG GGATCCTGAA GGATTTGAAA GCACCCCGGG GGACCCTAAA 
GGATTTGAAA GCACCCCGGG GGACCCTGAA GGATTTGAAA GCACCCCAGG GGACCCTGTA 
GGATTTGAAA GCACCCCAAC AGAGGAAGAA CATTTAGCAG TTTATTCCTT TGATGATGAC 
TTTCAGCATC CCAGGGTTTT GCAGAGGAGT GAAGAACTGC GTTCAACATC TGATTCATGT 
CGGGAGAGAA GTCCTGTAGA ACTGTTTACA GATCCAGGGG AAAAGGTGGA GGTTATGCTT 
GGAAGAATTG GAGTTGACAT TAACCGTGCT CTTAGTGCTA AGAGACAAAG AATGGAGACA 
ACTGCCAGAC AGTCTTTTGA GGGAGTTGAG CAGAAAATGA AAGAAGTTTG GAACTCTCAT 
GAAGATGCAA TGGCACAGCT TAATGAAGAG TCTGCTCAGG CATTTGCAAA TCTGTTTGAG 
CAATGGAATG AGGATTTTAA GAAATTCCGA GAACAACATG AGAAACTTGT GAATGATTTT 
AAGCAACAGG AGAAGATTTT TCAACGAACT AGATTTGTTC AGAACCAGAG AATTAGAACA 
ATTAAAGAAA TACATGAACA ATTCTTACAG AAATTGGAAG ACCTGGAGAG CAAGAATGAT 
GATCTGCTTA CTAGAACACA AAATGAACTT AAGGATGAAA TTAATGATCT GCAGAAAAAA 
ATTTTGAGAG AATCTGAGGA GTCTACGCTC TTTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001186942.1
CDS	84..959
Translation	MFPRGRRDPEEFKSTPEDPEEPESTTRDPGGLESTPGDPEGFESTPGDPEGFESTPGDPKGFESTPGDPEGFESTPGDPVGFESTPTEEEHLAVYSFDDDFQHPRVLQRSEELRSTSDSCRERSPVELFTDPGEKVEVMLGRIGVDINRALSAKRQRMETTARQSFEGVEQKMKEVWNSHEDAMAQLNEESAQAFANLFEQWNEDFKKFREQHEKLVNDFKQQEKIFQRTRFVQNQRIRTIKEIHEQFLQKLEDLESKNDDLLTRTQNELKDEINDLQKKILRESEESTLF

Target ORF information:

RefSeq Version	NM_001200013.1
Organism	Mus musculus(house mouse)
Definition	Mus musculus RIKEN cDNA 1700013H16 gene (1700013H16Rik), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001200013.1

ORF Insert Sequence:

ATGTTTCCCC GTGGAAGAAG GGACCCTGAA GAATTTAAAA GCACCCCAGA GGACCCTGAA 
GAACCTGAAA GCACCACAAG GGACCCTGGA GGACTTGAAA GCACCCCAGG GGACCCTGAA 
GGATTTGAAA GCACCCCAGG GGATCCTGAA GGATTTGAAA GCACCCCGGG GGACCCTAAA 
GGATTTGAAA GCACCCCGGG GGACCCTGAA GGATTTGAAA GCACCCCAGG GGACCCTGTA 
GGATTTGAAA GCACCCCAAC AGAGGAAGAA CATTTAGCAG TTTATTCCTT TGATGATGAC 
TTTCAGCATC CCAGGGTTTT GCAGAGGAGT GAAGAACTGC GTTCAACATC TGATTCATGT 
CGGGAGAGAA GTCCTGTAGA ACTGTTTACA GATCCAGGGG AAAAGGTGGA GGTTATGCTT 
GGAAGAATTG GAGTTGACAT TAACCGTGCT CTTAGTGCTA AGAGACAAAG AATGGAGACA 
ACTGCCAGAC AGTCTTTTGA GGGAGTTGAG CAGAAAATGA AAGAAGTTTG GAACTCTCAT 
GAAGATGCAA TGGCACAGCT TAATGAAGAG TCTGCTCAGG CATTTGCAAA TCTGTTTGAG 
CAATGGAATG AGGATTTTAA GAAATTCCGA GAACAACATG AGAAACTTGT GAATGATTTT 
AAGCAACAGG AGAAGATTTT TCAACGAACT AGATTTGTTC AGAACCAGAG AATTAGAACA 
ATTAAAGAAA TACATGAACA ATTCTTACAG AAATTGGAAG ACCTGGAGAG CAAGAATGAT 
GATCTGCTTA CTAGAACACA AAATGAACTT AAGGATGAAA TTAATGATCT GCAGAAAAAA 
ATTTTGAGAG AATCTGAGGA GTCTACGCTC TTTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Trim27 interacts with Slx2, is associated with meiotic processes during spermatogenesis.
Cell cycle (Georgetown, Tex.)15(19)2576-2584(2016 Oct)
Zhuang XJ,Tang WH,Feng X,Liu CY,Zhu JL,Yan J,Liu DF,Liu P,Qiao J

SLX2 interacting with BLOS2 is differentially expressed during mouse oocyte meiotic maturation.
Cell cycle (Georgetown, Tex.)13(14)2231-7(2014)
Zhuang XJ,Shi YQ,Xu B,Chen L,Tang WH,Huang J,Lian Y,Liu P,Qiao J

SYCP3-like X-linked 2 is expressed in meiotic germ cells and interacts with synaptonemal complex central element protein 2 and histone acetyltransferase TIP60.
Gene527(1)352-9(2013 Sep)
Shi YQ,Zhuang XJ,Xu B,Hua J,Liao SY,Shi Q,Cooke HJ,Han C

HORMAD1-dependent checkpoint/surveillance mechanism eliminates asynaptic oocytes.
Genes to cells : devoted to molecular & cellular mechanisms17(6)439-54(2012 Jun)
Kogo H,Tsutsumi M,Ohye T,Inagaki H,Abe T,Kurahashi H

Characterization of a novel mouse gene encoding an SYCP3-like protein that relocalizes from the XY body to the nucleolus during prophase of male meiosis I.
Biology of reproduction85(1)165-71(2011 Jul)
Tsutsumi M,Kogo H,Kowa-Sugiyama H,Inagaki H,Ohye T,Kurahashi H

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1700013H16RIK cDNA ORF clone, Mus musculus(House mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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