Gene Symbol | DDX39B |
Entrez Gene ID | 715233 |
Full Name | DExD-box helicase 39B |
Synonyms | BAT1 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » DDX39B cDNA ORF clone
Gene Symbol | DDX39B |
Entrez Gene ID | 715233 |
Full Name | DExD-box helicase 39B |
Synonyms | BAT1 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
XM_015135918.1 | XP_014991404.1 | spliceosome RNA helicase DDX39B isoform X1 |
XM_015135920.1 | XP_014991406.1 | spliceosome RNA helicase DDX39B isoform X1 |
NM_001047143.1 | NP_001040608.1 | spliceosome RNA helicase DDX39B |
XM_015135918.2 | XP_014991404.1 | spliceosome RNA helicase DDX39B isoform X1 |
XM_015135919.1 | XP_014991405.1 | spliceosome RNA helicase DDX39B isoform X1 |
XM_015135919.2 | XP_014991405.1 | spliceosome RNA helicase DDX39B isoform X1 |
Rattus norvegicus (Norway rat) | Ddx39b | NP_579834.2 |
Danio rerio (zebrafish) | bat1 | NP_957237.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009075 | XP_319825.4 |
Oryza sativa (rice) | Os01g0550000 | NP_001043298.1 |
Homo sapiens (human) | DDX39B | NP_004631.1 |
Canis lupus familiaris (dog) | DDX39B | NP_001014399.1 |
Pan troglodytes (chimpanzee) | DDX39B | NP_001107635.1 |
DDX39B | NP_001040608.1 | |
Kluyveromyces lactis | KLLA0E21935g | XP_454944.1 |
Arabidopsis thaliana (thale cress) | AT5G11170 | NP_568244.2 |
Xenopus tropicalis (tropical clawed frog) | ddx39b | NP_989072.1 |
Bos taurus (cattle) | DDX39B | NP_001028801.1 |
Mus musculus (house mouse) | Ddx39b | NP_001239386.1 |
Drosophila melanogaster (fruit fly) | Hel25E | NP_723089.1 |
Schizosaccharomyces pombe (fission yeast) | uap56 | NP_594261.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_02806 | XP_003720935.1 |
Neurospora crassa | NCU09076 | XP_964893.2 |
Saccharomyces cerevisiae (baker's yeast) | SUB2 | NP_010199.1 |
Eremothecium gossypii | AGOS_ADR260C | NP_984356.1 |
Oryza sativa (rice) | Os01g0549700 | NP_001043297.1 |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
Rhesus macaque class I duplicon structures, organization, and evolution within the alpha block of the major histocompatibility complex.
Kulski JK, Anzai T, Shiina T, Inoko H
Molecular biology and evolution21(11)2079-91(2004 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following DDX39B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DDX39B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | NM_001047143.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-07-05 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB128049.1. On or before Sep 7, 2006 this sequence version replaced XM_001111258.1, XM_001111294.1, XM_001111335.1, XM_001111225.1, XM_001111035.1, XM_001111074.1, XM_001111146.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA4688315, SAMEA4688316 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001040608.1 |
CDS | 1..1287 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001047143.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | XM_015135918.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014804797.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991404.1 |
CDS | 634..1920 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015135918.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | XM_015135920.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014804797.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991406.1 |
CDS | 505..1791 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015135920.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | XM_015135918.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041757.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015135918.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991404.1 |
CDS | 518..1804 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015135918.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | XM_015135919.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014804797.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991405.1 |
CDS | 668..1954 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015135919.1 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb01898 | |
Clone ID Related Accession (Same CDS sequence) | XM_015135918.1 , XM_015135920.1 , NM_001047143.1 , XM_015135918.2 , XM_015135919.1 , XM_015135919.2 | |
Accession Version | XM_015135919.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | spliceosome RNA helicase DDX39B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041757.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015135919.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991405.1 |
CDS | 494..1780 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015135919.2 |
1 | ATGGCAGAGA ACGATGTGGA CAATGAGCTC TTGGACTATG AAGATGATGA GGTGGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |
Rhesus macaque class I duplicon structures, organization, and evolution within the alpha block of the major histocompatibility complex. |