CG6409 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	CG6409
Entrez Gene ID	39220
Full Name	CG6409 gene product from transcript CG6409-RB
Synonyms	Dmel\CG6409
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3L Map Location: 67F1-67F1

mRNA and Protein(s)

mRNA	Protein	Name
NM_140158.2	NP_648415.1	uncharacterized protein, isoform A
NM_001300094.1	NP_001287023.1	uncharacterized protein, isoform B

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following CG6409 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CG6409 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa18182	NM_140158.2 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant A (CG6409), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00
OFa18182	NM_001300094.1 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant B (CG6409), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

CG6409 ( NM_140158.2 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_648415.1 Drosophila melanogaster uncharacterized protein, transcript variant A (CG6409), mRNA.

Price & Availability↑

CloneID	OFa18182
Clone ID Related Accession (Same CDS sequence)	NM_140158.2 , NM_001300094.1
Accession Version	NM_140158.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1083bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_140158.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGAAGTCGG TTATTATTCT CTTAGCCCTG GTGGCTTTCT GCCACGCAGC ACCTCTGGAT 
GTCAAGGAGT CTACCTCTGA GGAGCTCTCT AGGCCCAGTC CCATCAGCCC CGATGTGCTC 
GTTGATCCCA AGCCCACCGC CAAGGTAGTC TTGCTGAAGG ATGCTCCCGT CCTGAATCGC 
CAGAGGCGTA ATGAACCCAA GAAGCCCGAC AGCGTGGAGG CCCACGAACA GCTGCATCAC 
TCGCAGCCGG CCGTTCCTAT TCATGACCAG AAGCCTTCTC CGGCTGGGCC ACAGGACCAC 
AAGCGCAAGA GGGAAGCTCA CCACGAGGAG GGTCACCATG GTGACGATGC AGTGCCCCAG 
AAGGAGGAAG TGAAGCAAGC TCCCGAGGAC CATGACGCCA AGAAGGAAAA GAGAGAGGCT 
CACCATGAGG AGGGTCACCA AGACCATGAG GCTCCTCATA AGGAGGAAGT GAAGCAGGCC 
CCCGAAGCTC ATGATGCCAA AAGGGAAAAG CGAGAGGCTC ACCACGAGGA AGGCCACCAT 
GGTGATGATG CAGCTCCACA TAAGGAGGAA GTGAAGCAGG CTCCCGAAAC ACATGAGGAC 
AAGAAGGAAA AGAGGGAAGC TCACCACGAG GAGGGCCACA AGGATGAGGC AGGTGATCGT 
CCTCAGGTGG AGGATCTTTC GCTGCCCCAT GCCCTGCCCG CTGTGGCCCA CACCGCCGAG 
CTGCCCAAGA AGCAGGAAAA GCGCGAGACT GTGGAGAAAC CCGACAGCGT GAAGGCCCGT 
GAGTCGCTCC AGCACAATCC CCAGCGATCC CAGGAGCTCC ACAAGGCCAT CGAATCTCTG 
GCCGGTGGAA AGGCGCCGGA ACAGCGTCAC CAGCGCGATA TTCCCGTGCC CACGCAAACC 
AAAGCCACCA CCACCACCGA TCTCCCATCC ACCACCAAAT CGGAGCTGGA AAGCACCACT 
CCGTCCATCC ACAATCTCCA CATCCCCCAT CCCATTCCCG TGGCCGAGCT CTTCGAGAAG 
AACAAGCACG CGGATAAGTC CACTTCCAGT TCCGAGGAAA GCAAGGAGAA AGCTAAGGCC 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_648415.1
CDS	37..1119
Translation	MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVVLLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDHKRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHEAPHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHEDKKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRETVEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQTKATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSSSEESKEKAKA

Target ORF information:

RefSeq Version	NM_140158.2
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant A (CG6409), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_140158.2

ORF Insert Sequence:

ATGAAGTCGG TTATTATTCT CTTAGCCCTG GTGGCTTTCT GCCACGCAGC ACCTCTGGAT 
GTCAAGGAGT CTACCTCTGA GGAGCTCTCT AGGCCCAGTC CCATCAGCCC CGATGTGCTC 
GTTGATCCCA AGCCCACCGC CAAGGTAGTC TTGCTGAAGG ATGCTCCCGT CCTGAATCGC 
CAGAGGCGTA ATGAACCCAA GAAGCCCGAC AGCGTGGAGG CCCACGAACA GCTGCATCAC 
TCGCAGCCGG CCGTTCCTAT TCATGACCAG AAGCCTTCTC CGGCTGGGCC ACAGGACCAC 
AAGCGCAAGA GGGAAGCTCA CCACGAGGAG GGTCACCATG GTGACGATGC AGTGCCCCAG 
AAGGAGGAAG TGAAGCAAGC TCCCGAGGAC CATGACGCCA AGAAGGAAAA GAGAGAGGCT 
CACCATGAGG AGGGTCACCA AGACCATGAG GCTCCTCATA AGGAGGAAGT GAAGCAGGCC 
CCCGAAGCTC ATGATGCCAA AAGGGAAAAG CGAGAGGCTC ACCACGAGGA AGGCCACCAT 
GGTGATGATG CAGCTCCACA TAAGGAGGAA GTGAAGCAGG CTCCCGAAAC ACATGAGGAC 
AAGAAGGAAA AGAGGGAAGC TCACCACGAG GAGGGCCACA AGGATGAGGC AGGTGATCGT 
CCTCAGGTGG AGGATCTTTC GCTGCCCCAT GCCCTGCCCG CTGTGGCCCA CACCGCCGAG 
CTGCCCAAGA AGCAGGAAAA GCGCGAGACT GTGGAGAAAC CCGACAGCGT GAAGGCCCGT 
GAGTCGCTCC AGCACAATCC CCAGCGATCC CAGGAGCTCC ACAAGGCCAT CGAATCTCTG 
GCCGGTGGAA AGGCGCCGGA ACAGCGTCAC CAGCGCGATA TTCCCGTGCC CACGCAAACC 
AAAGCCACCA CCACCACCGA TCTCCCATCC ACCACCAAAT CGGAGCTGGA AAGCACCACT 
CCGTCCATCC ACAATCTCCA CATCCCCCAT CCCATTCCCG TGGCCGAGCT CTTCGAGAAG 
AACAAGCACG CGGATAAGTC CACTTCCAGT TCCGAGGAAA GCAAGGAGAA AGCTAAGGCC 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

CG6409 ( NM_001300094.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001287023.1 Drosophila melanogaster uncharacterized protein, transcript variant B (CG6409), mRNA.

Price & Availability↑

CloneID	OFa18182
Clone ID Related Accession (Same CDS sequence)	NM_140158.2 , NM_001300094.1
Accession Version	NM_001300094.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1083bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGAAGTCGG TTATTATTCT CTTAGCCCTG GTGGCTTTCT GCCACGCAGC ACCTCTGGAT 
GTCAAGGAGT CTACCTCTGA GGAGCTCTCT AGGCCCAGTC CCATCAGCCC CGATGTGCTC 
GTTGATCCCA AGCCCACCGC CAAGGTAGTC TTGCTGAAGG ATGCTCCCGT CCTGAATCGC 
CAGAGGCGTA ATGAACCCAA GAAGCCCGAC AGCGTGGAGG CCCACGAACA GCTGCATCAC 
TCGCAGCCGG CCGTTCCTAT TCATGACCAG AAGCCTTCTC CGGCTGGGCC ACAGGACCAC 
AAGCGCAAGA GGGAAGCTCA CCACGAGGAG GGTCACCATG GTGACGATGC AGTGCCCCAG 
AAGGAGGAAG TGAAGCAAGC TCCCGAGGAC CATGACGCCA AGAAGGAAAA GAGAGAGGCT 
CACCATGAGG AGGGTCACCA AGACCATGAG GCTCCTCATA AGGAGGAAGT GAAGCAGGCC 
CCCGAAGCTC ATGATGCCAA AAGGGAAAAG CGAGAGGCTC ACCACGAGGA AGGCCACCAT 
GGTGATGATG CAGCTCCACA TAAGGAGGAA GTGAAGCAGG CTCCCGAAAC ACATGAGGAC 
AAGAAGGAAA AGAGGGAAGC TCACCACGAG GAGGGCCACA AGGATGAGGC AGGTGATCGT 
CCTCAGGTGG AGGATCTTTC GCTGCCCCAT GCCCTGCCCG CTGTGGCCCA CACCGCCGAG 
CTGCCCAAGA AGCAGGAAAA GCGCGAGACT GTGGAGAAAC CCGACAGCGT GAAGGCCCGT 
GAGTCGCTCC AGCACAATCC CCAGCGATCC CAGGAGCTCC ACAAGGCCAT CGAATCTCTG 
GCCGGTGGAA AGGCGCCGGA ACAGCGTCAC CAGCGCGATA TTCCCGTGCC CACGCAAACC 
AAAGCCACCA CCACCACCGA TCTCCCATCC ACCACCAAAT CGGAGCTGGA AAGCACCACT 
CCGTCCATCC ACAATCTCCA CATCCCCCAT CCCATTCCCG TGGCCGAGCT CTTCGAGAAG 
AACAAGCACG CGGATAAGTC CACTTCCAGT TCCGAGGAAA GCAAGGAGAA AGCTAAGGCC 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001287023.1
CDS	369..1451
Translation	MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVVLLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDHKRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHEAPHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHEDKKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRETVEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQTKATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSSSEESKEKAKA

Target ORF information:

RefSeq Version	NM_001300094.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant B (CG6409), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001300094.1

ORF Insert Sequence:

ATGAAGTCGG TTATTATTCT CTTAGCCCTG GTGGCTTTCT GCCACGCAGC ACCTCTGGAT 
GTCAAGGAGT CTACCTCTGA GGAGCTCTCT AGGCCCAGTC CCATCAGCCC CGATGTGCTC 
GTTGATCCCA AGCCCACCGC CAAGGTAGTC TTGCTGAAGG ATGCTCCCGT CCTGAATCGC 
CAGAGGCGTA ATGAACCCAA GAAGCCCGAC AGCGTGGAGG CCCACGAACA GCTGCATCAC 
TCGCAGCCGG CCGTTCCTAT TCATGACCAG AAGCCTTCTC CGGCTGGGCC ACAGGACCAC 
AAGCGCAAGA GGGAAGCTCA CCACGAGGAG GGTCACCATG GTGACGATGC AGTGCCCCAG 
AAGGAGGAAG TGAAGCAAGC TCCCGAGGAC CATGACGCCA AGAAGGAAAA GAGAGAGGCT 
CACCATGAGG AGGGTCACCA AGACCATGAG GCTCCTCATA AGGAGGAAGT GAAGCAGGCC 
CCCGAAGCTC ATGATGCCAA AAGGGAAAAG CGAGAGGCTC ACCACGAGGA AGGCCACCAT 
GGTGATGATG CAGCTCCACA TAAGGAGGAA GTGAAGCAGG CTCCCGAAAC ACATGAGGAC 
AAGAAGGAAA AGAGGGAAGC TCACCACGAG GAGGGCCACA AGGATGAGGC AGGTGATCGT 
CCTCAGGTGG AGGATCTTTC GCTGCCCCAT GCCCTGCCCG CTGTGGCCCA CACCGCCGAG 
CTGCCCAAGA AGCAGGAAAA GCGCGAGACT GTGGAGAAAC CCGACAGCGT GAAGGCCCGT 
GAGTCGCTCC AGCACAATCC CCAGCGATCC CAGGAGCTCC ACAAGGCCAT CGAATCTCTG 
GCCGGTGGAA AGGCGCCGGA ACAGCGTCAC CAGCGCGATA TTCCCGTGCC CACGCAAACC 
AAAGCCACCA CCACCACCGA TCTCCCATCC ACCACCAAAT CGGAGCTGGA AAGCACCACT 
CCGTCCATCC ACAATCTCCA CATCCCCCAT CCCATTCCCG TGGCCGAGCT CTTCGAGAAG 
AACAAGCACG CGGATAAGTC CACTTCCAGT TCCGAGGAAA GCAAGGAGAA AGCTAAGGCC 
TAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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CG6409 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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