Gene Symbol | Lim3 |
Entrez Gene ID | 35184 |
Full Name | CG10699 gene product from transcript CG10699-RF |
Synonyms | CG10699,CG15174,Dmel\CG10699,Lim-3A,l(2)37Bd,l(2)Bd,lim3 |
Gene Type | protein-coding |
Organism | Drosophila melanogaster(fruit fly) |
Genome |
ORF » Species Summary » Drosophila melanogaster » Lim3 cDNA ORF clone
Gene Symbol | Lim3 |
Entrez Gene ID | 35184 |
Full Name | CG10699 gene product from transcript CG10699-RF |
Synonyms | CG10699,CG15174,Dmel\CG10699,Lim-3A,l(2)37Bd,l(2)Bd,lim3 |
Gene Type | protein-coding |
Organism | Drosophila melanogaster(fruit fly) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001259159.1 | NP_001246088.1 | Lim3, isoform F |
NM_001273630.2 | NP_001260559.1 | Lim3, isoform G |
NM_165277.3 | NP_724161.1 | Lim3, isoform B |
NM_001259157.3 | NP_001246086.1 | Lim3, isoform D |
NM_001259158.3 | NP_001246087.1 | Lim3, isoform E |
NM_057258.5 | NP_476606.1 | Lim3, isoform A |
NM_001259156.1 | NP_001246085.1 | Lim3, isoform C |
Homo sapiens (human) | LHX3 | NP_055379.1 |
Rattus norvegicus (Norway rat) | Lhx3 | XP_001059910.2 |
Gallus gallus (chicken) | LHX3 | NP_001025506.1 |
Bos taurus (cattle) | LHX3 | NP_001033709.1 |
Danio rerio (zebrafish) | lhx3 | NP_571283.1 |
Drosophila melanogaster (fruit fly) | Lim3 | NP_001246085.1 |
Mus musculus (house mouse) | Lhx3 | NP_001034742.1 |
LHX3 | XP_001096188.1 | |
Canis lupus familiaris (dog) | LHX3 | NP_001184116.1 |
Pan troglodytes (chimpanzee) | LHX3 | XP_001171089.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009088 | XP_319836.3 |
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
These observations provide evidence for combinatorial activity of Isl and Lim3 in regulating ion channel gene expression
Title: The transcription factors islet and Lim3 combinatorially regulate ion channel gene expression.
Polymorphism of Lim3 affects Lim3 transcription and fly lifespan.
Title: A naturally occurring polymorphism at Drosophila melanogaster Lim3 Locus, a homolog of human LHX3/4, affects Lim3 transcription and fly lifespan.
Molecular variation of the shuttle craft and Lim3 genes, controlling the development of the nervous system, in a natural Drosophila melanogaster population
Title: [Molecular variation of the shuttle craft and Lim3 genes, controlling the development of the nervous system, in a natural Drosophila melanogaster population].
the class III POU protein, Drifter (Ventral veinless), is co-expressed with Islet and Lim3 specifically in the ISNb motoneuron subclass
Title: Specification of Drosophila motoneuron identity by the combinatorial action of POU and LIM-HD factors.
The following Lim3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Lim3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OFa14938 | |
Clone ID Related Accession (Same CDS sequence) | NM_001259158.3 | |
Accession Version | NM_001259158.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1218bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform E | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_001259158.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGGCCACAA TCCCGAAATG CGGCGGCTGC CACGAGCTGA TCCTTGACCG CTTCATCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001246087.1 |
CDS | 122..1339 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001259158.3 |
1 | ATGGCCACAA TCCCGAAATG CGGCGGCTGC CACGAGCTGA TCCTTGACCG CTTCATCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa16044 | |
Clone ID Related Accession (Same CDS sequence) | NM_057258.5 | |
Accession Version | NM_057258.5 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1323bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform A | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_057258.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGGAACTTT TGAAGCTAAT GATGTTCAAA AGTGACTTCC TGTCCAATGG CAAATGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_476606.1 |
CDS | 295..1617 |
Translation |
Target ORF information:
Target ORF information:
|
NM_057258.5 |
1 | ATGGAACTTT TGAAGCTAAT GATGTTCAAA AGTGACTTCC TGTCCAATGG CAAATGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa14936 | |
Clone ID Related Accession (Same CDS sequence) | NM_001259159.1 , NM_165277.3 , NM_001259157.3 , NM_001259156.1 | |
Accession Version | NM_001259159.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform F | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001246088.1 |
CDS | 1136..2698 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001259159.1 |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa14936 | |
Clone ID Related Accession (Same CDS sequence) | NM_001259159.1 , NM_165277.3 , NM_001259157.3 , NM_001259156.1 | |
Accession Version | NM_165277.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform B | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_165277.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_724161.1 |
CDS | 170..1732 |
Translation |
Target ORF information:
Target ORF information:
|
NM_165277.3 |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa14936 | |
Clone ID Related Accession (Same CDS sequence) | NM_001259159.1 , NM_165277.3 , NM_001259157.3 , NM_001259156.1 | |
Accession Version | NM_001259157.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform D | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_001259157.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001246086.1 |
CDS | 205..1767 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001259157.3 |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa14936 | |
Clone ID Related Accession (Same CDS sequence) | NM_001259159.1 , NM_165277.3 , NM_001259157.3 , NM_001259156.1 | |
Accession Version | NM_001259156.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform C | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001246085.1 |
CDS | 494..2056 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001259156.1 |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa14937 | |
Clone ID Related Accession (Same CDS sequence) | NM_001273630.2 | |
Accession Version | NM_001273630.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1668bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Lim3, isoform G | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_001273630.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001260559.1 |
CDS | 205..1872 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001273630.2 |
1 | ATGATGCAAA CCCTGAAACC ACCGCCACCG CTACATCATC ACCACCAGCA TCAGCACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data. |
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders. |
Sequence finishing and mapping of Drosophila melanogaster heterochromatin. |
The Release 5.1 annotation of Drosophila melanogaster heterochromatin. |
Combined evidence annotation of transposable elements in genome sequences. |