y cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	y
Entrez Gene ID	30980
Full Name	yellow
Synonyms	CG3757,Dmel\CG3757,EG:125H10.2,T6,Y
General protein information	Preferred Names yellow Names CG3757 gene product from transcript CG3757-RA CG3757-PA y-PA
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: X Map Location: 1A5-1A5\|1-0.0 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_057444.3	NP_476792.1	yellow

Pathways from BioSystems

Homologies

Drosophila melanogaster (fruit fly)	y	NP_476792.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000879	XP_316854.4

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

the negative effect of transcription of the Drosophila genes white and yellow remained, but weakened with increased distance between the leading promoter and enhancer and with decreased distance between the enhancer and target promoter
Title: [The Effect of Transcription on Enhancer Activity in Drosophila melanogaster].

role of yellow gene sequences from -70 to-146 bp in the transcriptional activation at the end of terminally truncated chromosome in Drosophila melanogaster
Title: Role of yellow gene sequences from -70 to-146 bp in the transcriptional activation at the end of terminally truncated chromosome in Drosophila melanogaster.

Study shows that the polyadenylation signal from the yellow gene cannot efficiently terminate transcription when located in the gene intron and that the Su(Hw)-dependent 1A2 insulator cannot enhance the polyadenylation signal efficiency
Title: Study of functional activity of the 1A2 insulator and polyadenylation signal in intron of the yellow gene of Drosophila melanogaster.

Data show that flies lacking yar RNAs are viable and show no overt morphological defects, consistent with maintained transcriptional regulation of the adjacent yellow (y) and achaete (ac) genes.
Title: A conserved long noncoding RNA affects sleep behavior in Drosophila.

Both insulators support basal activity of the yellow and white promoters in eyes.
Title: Insulators form gene loops by interacting with promoters in Drosophila.

The following y gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the y cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa41164	NM_057444.3 Latest version!	Drosophila melanogaster yellow (y), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$342.30 $489.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

y ( NM_057444.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_476792.1 Drosophila melanogaster yellow (y), mRNA.

Price & Availability↑

CloneID	OFa41164
Clone ID Related Accession (Same CDS sequence)	NM_057444.3
Accession Version	NM_057444.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1626bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	yellow
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Nov 6, 2002 this sequence version replaced NM_057444.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

CTGTTCCAGG ACAAAGGGTG GATCCTTGTG ACCCTGATCA CCTTGGTGAC GCCGTCTTGG 
GCTGCTTACA AACTTCAGGA GCGATATAGT TGGAGCCAGC TGGACTTTGC TTTCCCGAAT 
ACCCGACTAA AGGACCAAGC TCTGGCTAGT GGAGATTATA TTCCGCAAAA TGCTCTACCT 
GTTGGAGTCG AACACTTTGG CAATCGGTTA TTCGTCACTG TTCCCCGCTG GCGTGATGGG 
ATTCCGGCCA CTCTGACCTA TATAAACATG GACCGCAGTT TGACGGGTTC ACCGGAGCTA 
ATTCCGTATC CAGATTGGCG CTCAAATACA GCTGGAGATT GCGCCAACAG TATTACCACT 
GCCTACCGCA TTAAAGTGGA TGAGTGTGGT CGGCTGTGGG TTTTGGACAC TGGAACCGTG 
GGCATCGGCA ATACCACCAC TAATCCGTGC CCCTATGCGG TAAATGTCTT TGACTTGACC 
ACGGATACGC GAATTCGGAG ATACGAGCTA CCTGGCGTGG ACACAAATCC AAATACTTTC 
ATAGCTAACA TTGCCGTGGA TATAGGCAAA AATTGCGATG ATGCATATGC CTATTTTGCC 
GATGAATTGG GATACGGCTT GATTGCTTAC TCCTGGGAAC TGAACAAGTC CTGGAGATTC 
TCGGCACATT CGTATTTTTT CCCCGATCCA TTGAGGGGCG ATTTCAATGT CGCTGGTATT 
AACTTCCAAT GGGGCGAGGA GGGTATATTT GGTATGTCCC TTTCGCCCAT TCGATCGGAT 
GGTTATCGTA CCCTGTACTT TAGTCCGTTA GCAAGTCATC GACAATTTGC CGTATCCACG 
AGGATTTTGA GGGATGAAAC CAGGACGGAA GATAGCTATC ATGACTTTGT TGCCTTAGAT 
GAACGGGGTC CAAACTCCCA TACCACTTCA CGTGTGATGA GCGATGATGG AATTGAGCTG 
TTCAATTTAA TAGATCAAAA TGCAGTGGGT TGCTGGCACT CATCAATGCC GTACTCACCG 
CAATTTCATG GCATTGTGGA TCGCGATGAC GTTGGCTTAG TTTTTCCGGC CGATGTGAAA 
ATTGATGAGA ACAAAAACGT TTGGGTTCTA TCCGATAGGA TGCCCGTTTT CTTGCTGTCT 
GACTTGGATT ATTCAGATAC TAATTTCCGA ATTTACACGG CTCCCTTGGC CACTTTAATT 
GAGAATACTG TGTGTGATTT GAGGAATAAC GCCTATGGGC CGCCAAATAC CGTTTCAATA 
CCAAAACAAG CCGTTTTGCC AATGGGTCCA CCGTTATATA CGAAACAATA TCGTCCTGTC 
TTGCCACAGA AACCTCAGAC CAGCTGGGCT TCCTCGCCGC CTCCTCCAAG TCGCACTTAT 
TTGCCCGCCA ATTCAGGCAA TGTAGTCTCC AGTATTAGTG TCTCTACAAA TTCTGTGGGT 
CCTGCAGGAG TGGAGGTGCC AAAGGCCTAT ATTTTCAACC AGCACAACGG CATAAATTAC 
GAGACAAGTG GTCCCCATCT ATTTCCCACC CATCAACCCG CCCAACCGGG TGGCCAGGAT 
GGTGGGTTAA AAACTTATGT GAATGCCCGC CAATCTGGGT GGTGGCATCA TCAGCATCAA 
GGTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_476792.1
CDS	172..1797
Translation	LFQDKGWILVTLITLVTPSWAAYKLQERYSWSQLDFAFPNTRLKDQALASGDYIPQNALPVGVEHFGNRLFVTVPRWRDGIPATLTYINMDRSLTGSPELIPYPDWRSNTAGDCANSITTAYRIKVDECGRLWVLDTGTVGIGNTTTNPCPYAVNVFDLTTDTRIRRYELPGVDTNPNTFIANIAVDIGKNCDDAYAYFADELGYGLIAYSWELNKSWRFSAHSYFFPDPLRGDFNVAGINFQWGEEGIFGMSLSPIRSDGYRTLYFSPLASHRQFAVSTRILRDETRTEDSYHDFVALDERGPNSHTTSRVMSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSDRMPVFLLSDLDYSDTNFRIYTAPLATLIENTVCDLRNNAYGPPNTVSIPKQAVLPMGPPLYTKQYRPVLPQKPQTSWASSPPPPSRTYLPANSGNVVSSISVSTNSVGPAGVEVPKAYIFNQHNGINYETSGPHLFPTHQPAQPGGQDGGLKTYVNARQSGWWHHQHQG

Target ORF information:

RefSeq Version	NM_057444.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster yellow (y), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_057444.3

ORF Insert Sequence:

CTGTTCCAGG ACAAAGGGTG GATCCTTGTG ACCCTGATCA CCTTGGTGAC GCCGTCTTGG 
GCTGCTTACA AACTTCAGGA GCGATATAGT TGGAGCCAGC TGGACTTTGC TTTCCCGAAT 
ACCCGACTAA AGGACCAAGC TCTGGCTAGT GGAGATTATA TTCCGCAAAA TGCTCTACCT 
GTTGGAGTCG AACACTTTGG CAATCGGTTA TTCGTCACTG TTCCCCGCTG GCGTGATGGG 
ATTCCGGCCA CTCTGACCTA TATAAACATG GACCGCAGTT TGACGGGTTC ACCGGAGCTA 
ATTCCGTATC CAGATTGGCG CTCAAATACA GCTGGAGATT GCGCCAACAG TATTACCACT 
GCCTACCGCA TTAAAGTGGA TGAGTGTGGT CGGCTGTGGG TTTTGGACAC TGGAACCGTG 
GGCATCGGCA ATACCACCAC TAATCCGTGC CCCTATGCGG TAAATGTCTT TGACTTGACC 
ACGGATACGC GAATTCGGAG ATACGAGCTA CCTGGCGTGG ACACAAATCC AAATACTTTC 
ATAGCTAACA TTGCCGTGGA TATAGGCAAA AATTGCGATG ATGCATATGC CTATTTTGCC 
GATGAATTGG GATACGGCTT GATTGCTTAC TCCTGGGAAC TGAACAAGTC CTGGAGATTC 
TCGGCACATT CGTATTTTTT CCCCGATCCA TTGAGGGGCG ATTTCAATGT CGCTGGTATT 
AACTTCCAAT GGGGCGAGGA GGGTATATTT GGTATGTCCC TTTCGCCCAT TCGATCGGAT 
GGTTATCGTA CCCTGTACTT TAGTCCGTTA GCAAGTCATC GACAATTTGC CGTATCCACG 
AGGATTTTGA GGGATGAAAC CAGGACGGAA GATAGCTATC ATGACTTTGT TGCCTTAGAT 
GAACGGGGTC CAAACTCCCA TACCACTTCA CGTGTGATGA GCGATGATGG AATTGAGCTG 
TTCAATTTAA TAGATCAAAA TGCAGTGGGT TGCTGGCACT CATCAATGCC GTACTCACCG 
CAATTTCATG GCATTGTGGA TCGCGATGAC GTTGGCTTAG TTTTTCCGGC CGATGTGAAA 
ATTGATGAGA ACAAAAACGT TTGGGTTCTA TCCGATAGGA TGCCCGTTTT CTTGCTGTCT 
GACTTGGATT ATTCAGATAC TAATTTCCGA ATTTACACGG CTCCCTTGGC CACTTTAATT 
GAGAATACTG TGTGTGATTT GAGGAATAAC GCCTATGGGC CGCCAAATAC CGTTTCAATA 
CCAAAACAAG CCGTTTTGCC AATGGGTCCA CCGTTATATA CGAAACAATA TCGTCCTGTC 
TTGCCACAGA AACCTCAGAC CAGCTGGGCT TCCTCGCCGC CTCCTCCAAG TCGCACTTAT 
TTGCCCGCCA ATTCAGGCAA TGTAGTCTCC AGTATTAGTG TCTCTACAAA TTCTGTGGGT 
CCTGCAGGAG TGGAGGTGCC AAAGGCCTAT ATTTTCAACC AGCACAACGG CATAAATTAC 
GAGACAAGTG GTCCCCATCT ATTTCCCACC CATCAACCCG CCCAACCGGG TGGCCAGGAT 
GGTGGGTTAA AAACTTATGT GAATGCCCGC CAATCTGGGT GGTGGCATCA TCAGCATCAA 
GGTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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y cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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