rpl31 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	rpl31
Entrez Gene ID	677758
Full Name	ribosomal protein L31
Synonyms	fe38a04,wu:fe38a04,zgc:136896
General protein information	Preferred Names ribosomal protein L31 Names 60S ribosomal protein L31
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_005169139.3	XP_005169196.1	60S ribosomal protein L31 isoform X1
NM_001040052.2	NP_001035141.1	60S ribosomal protein L31

Pathways from BioSystems

Homologies

Homo sapiens (human)	RPL31	NP_000984.1
Eremothecium gossypii	AGOS_AER076C	NP_984936.2
Magnaporthe oryzae (rice blast fungus)	MGG_03727	XP_003716153.1
Xenopus tropicalis (tropical clawed frog)	rpl31	NP_001005118.1
Pan troglodytes (chimpanzee)	LOC744983	XP_003950678.1
Bos taurus (cattle)	RPL31	NP_001020512.1
Rattus norvegicus (Norway rat)	Rpl31	NP_071951.1
Neurospora crassa	NCU08344	XP_965247.1
Gallus gallus (chicken)	RPL31	NP_001264684.1
Saccharomyces cerevisiae (baker's yeast)	RPL31B	NP_013510.3
Arabidopsis thaliana (thale cress)	AT5G56710	NP_200482.1
Oryza sativa (rice)	Os06g0319700	NP_001057508.1
	RPL31	XP_001106681.1
Canis lupus familiaris (dog)	RPL31	NP_001239132.1
Mus musculus (house mouse)	Rpl31	NP_444487.1
Caenorhabditis elegans (roundworm)	rpl-31	NP_493391.1
Saccharomyces cerevisiae (baker's yeast)	RPL31A	NP_010208.1
Schizosaccharomyces pombe (fission yeast)	rpl31	NP_594826.1
Arabidopsis thaliana (thale cress)	AT4G26230	NP_194353.1
Pan troglodytes (chimpanzee)	RPL31	XP_001162291.1
Danio rerio (zebrafish)	rpl31	NP_001035141.1
Kluyveromyces lactis	KLLA0B02937g	XP_451663.1
Arabidopsis thaliana (thale cress)	AT2G19740	NP_179564.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones.
Zheng W, Xu H, Lam SH, Luo H, Karuturi RK, Gong Z
PloS one8(1)e53562(2013)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following rpl31 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the rpl31 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa15627	NM_001040052.2 Latest version!	Danio rerio ribosomal protein L31 (rpl31), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa15627	XM_005169139.3 Latest version!	Danio rerio ribosomal protein L31 (rpl31), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

rpl31 ( NM_001040052.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001035141.1 Danio rerio ribosomal protein L31 (rpl31), mRNA.

Price & Availability↑

CloneID	ODa15627
Clone ID Related Accession (Same CDS sequence)	XM_005169139.3 , NM_001040052.2
Accession Version	NM_001040052.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 372bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-26
Organism	Danio rerio(zebrafish)
Product	60S ribosomal protein L31
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH539710.1, EH441458.1 and CU914623.4. On Jul 8, 2011 this sequence version replaced NM_001040052.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01033350.1, EB983022.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGGCACCCA AGAAGGGCGA GAAGAAGAAG GGCCGCTCGG CCATCAATGA AGTGGTGACC 
CGTGAATACA CCATCAACAT CCACAAGCGC ATCCACGGCA TCTCCTTCAA GAGGAGAGCT 
CCTCGCGCCC TGAAGGAGAT CCGCAAGTTC GCAGTGAAGG AGATGGGCAC TCCTGATGTC 
CGCATCGATA CACGCCTCAA CAAGGCCGTG TGGGCCAAAG GAGTGAGGAA TGTGCCGTAC 
CGCATGCGTG TGCGTCTGTC CCGGAAACGC AATGAGGATG AGGATTCCCC AAACAAGCTC 
TACACCCTCG TCACATACGT CCCCGTCACC ACCTACAAAG GTCTGCAGAC AGTAAATGTG 
GATGAAAATT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001035141.1
CDS	27..398
Translation	MAPKKGEKKKGRSAINEVVTREYTINIHKRIHGISFKRRAPRALKEIRKFAVKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVDEN

Target ORF information:

RefSeq Version	NM_001040052.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ribosomal protein L31 (rpl31), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001040052.2

ORF Insert Sequence:

ATGGCACCCA AGAAGGGCGA GAAGAAGAAG GGCCGCTCGG CCATCAATGA AGTGGTGACC 
CGTGAATACA CCATCAACAT CCACAAGCGC ATCCACGGCA TCTCCTTCAA GAGGAGAGCT 
CCTCGCGCCC TGAAGGAGAT CCGCAAGTTC GCAGTGAAGG AGATGGGCAC TCCTGATGTC 
CGCATCGATA CACGCCTCAA CAAGGCCGTG TGGGCCAAAG GAGTGAGGAA TGTGCCGTAC 
CGCATGCGTG TGCGTCTGTC CCGGAAACGC AATGAGGATG AGGATTCCCC AAACAAGCTC 
TACACCCTCG TCACATACGT CCCCGTCACC ACCTACAAAG GTCTGCAGAC AGTAAATGTG 
GATGAAAATT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

rpl31 ( XM_005169139.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005169196.1 Danio rerio ribosomal protein L31 (rpl31), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa15627
Clone ID Related Accession (Same CDS sequence)	XM_005169139.3 , NM_001040052.2
Accession Version	XM_005169139.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 372bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	60S ribosomal protein L31 isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007120.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005169139.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCACCCA AGAAGGGCGA GAAGAAGAAG GGCCGCTCGG CCATCAATGA AGTGGTGACC 
CGTGAATACA CCATCAACAT CCACAAGCGC ATCCACGGCA TCTCCTTCAA GAGGAGAGCT 
CCTCGCGCCC TGAAGGAGAT CCGCAAGTTC GCAGTGAAGG AGATGGGCAC TCCTGATGTC 
CGCATCGATA CACGCCTCAA CAAGGCCGTG TGGGCCAAAG GAGTGAGGAA TGTGCCGTAC 
CGCATGCGTG TGCGTCTGTC CCGGAAACGC AATGAGGATG AGGATTCCCC AAACAAGCTC 
TACACCCTCG TCACATACGT CCCCGTCACC ACCTACAAAG GTCTGCAGAC AGTAAATGTG 
GATGAAAATT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005169196.1
CDS	370..741
Translation	MAPKKGEKKKGRSAINEVVTREYTINIHKRIHGISFKRRAPRALKEIRKFAVKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTYVPVTTYKGLQTVNVDEN

Target ORF information:

RefSeq Version	XM_005169139.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio ribosomal protein L31 (rpl31), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005169139.3

ORF Insert Sequence:

ATGGCACCCA AGAAGGGCGA GAAGAAGAAG GGCCGCTCGG CCATCAATGA AGTGGTGACC 
CGTGAATACA CCATCAACAT CCACAAGCGC ATCCACGGCA TCTCCTTCAA GAGGAGAGCT 
CCTCGCGCCC TGAAGGAGAT CCGCAAGTTC GCAGTGAAGG AGATGGGCAC TCCTGATGTC 
CGCATCGATA CACGCCTCAA CAAGGCCGTG TGGGCCAAAG GAGTGAGGAA TGTGCCGTAC 
CGCATGCGTG TGCGTCTGTC CCGGAAACGC AATGAGGATG AGGATTCCCC AAACAAGCTC 
TACACCCTCG TCACATACGT CCCCGTCACC ACCTACAAAG GTCTGCAGAC AGTAAATGTG 
GATGAAAATT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones.
PloS one8(1)e53562(2013)
Zheng W,Xu H,Lam SH,Luo H,Karuturi RK,Gong Z