trim55a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	trim55a
Entrez Gene ID	436631
Full Name	tripartite motif containing 55a
Synonyms	trim55,wu:fb71c01,zgc:92123
General protein information	Preferred Names tripartite motif containing 55a Names tripartite motif-containing protein 55 MuRF2a tripartite motif-containing 55
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001002358.1	NP_001002358.1	tripartite motif-containing protein 55

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	TRIM55	XP_001160681.1
	TRIM55	XP_001100542.2
Canis lupus familiaris (dog)	TRIM55	XP_544105.2
Bos taurus (cattle)	TRIM55	NP_001192431.1
Homo sapiens (human)	TRIM55	NP_908973.1
Rattus norvegicus (Norway rat)	Trim55	NP_001012218.1
Danio rerio (zebrafish)	trim55b	NP_001035071.1
Xenopus tropicalis (tropical clawed frog)	trim55	XP_004915232.1
Gallus gallus (chicken)	TRIM55	NP_001186333.1
Mus musculus (house mouse)	Trim55	NP_001074750.1
Danio rerio (zebrafish)	trim55a	NP_001002358.1

Gene Ontology
Bibliography

Related articles in PubMed

The Calcineurin-FoxO-MuRF1 signaling pathway regulates myofibril integrity in cardiomyocytes.
Shimizu H, Langenbacher AD, Huang J, Wang K, Otto G, Geisler R, Wang Y, Chen JN
eLife6(2017 Aug)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Knockdown of fast skeletal myosin-binding protein C in zebrafish results in a severe skeletal myopathy.
Li M, Andersson-Lendahl M, Sejersen T, Arner A
The Journal of general physiology147(4)309-22(2016 Apr)

Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells.
Etard C, Armant O, Roostalu U, Gourain V, Ferg M, Str?hle U
Genome biology16267(2015 Dec)

The vertebrate muscle-specific RING finger protein family includes MuRF4--a novel, conserved E3-ubiquitin ligase.
Macqueen DJ, Fuentes EN, Vald?s JA, Molina A, Martin SA
FEBS letters588(23)4390-7(2014 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following trim55a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the trim55a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03804	NM_001002358.1 Latest version!	Danio rerio tripartite motif containing 55a (trim55a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

trim55a ( NM_001002358.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001002358.1 Danio rerio tripartite motif containing 55a (trim55a), mRNA.

Price & Availability↑

CloneID	ODa03804
Clone ID Related Accession (Same CDS sequence)	NM_001002358.1
Accession Version	NM_001002358.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1332bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-10-28
Organism	Danio rerio(zebrafish)
Product	tripartite motif-containing protein 55
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC075897.1. ##Evidence-Data-START## Transcript exon combination :: BC075897.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGAGCGTGA CTTTGGATTA CTGCCTCAGT AGATCGCGCG ACACCATGGA AAGTTTGGAG 
AGGCAGCTCA TTTGCCCCAT TTGCCTTGAG ATCTTCACCA AACCGGTGGT CATTTTACCG 
TGCCAGCACA ACCTCTGCCG CAAATGTGCC AACGACATCT TTCAGGCCTC AAACCCCTAC 
CTACCCACAC GGGGAGGCTC TTCACTGGGC TCCGGCGGCC GGTTCCGCTG TCCCTCCTGC 
AGACATGAAG TAGTTCTGGA CAGGCACGGG GTCTATGGCC TGCAGAGGAA CCTGCTGGTG 
GAGAATATCA TAGACATGTA CAAACAGGAG TCCAGCAGCA GTAAACCTGA GCCACAAGTG 
AAGGAAGAGG TGCTGATGTG CGAAGAGCAT CAGGACGAGA GGATTAATAT CTACTGCGTG 
ACGTGCTCTG TTCCTACTTG TTCGCTATGC AAAGTGTTCG GGAGTCATCA GACCTGTGAG 
GTCGCTCCAC TTAAATCTGT CTATGAGTCC CAGAAAACAG AGCTGTCCGA TGGCGTTGGC 
CTGTTAGTTG GAAACAATGA CAGAATTCAG GGAATTATCA GTCAGCTAGA GGAAACCTGC 
AGATCTGTGG AGGAGAACGG TCGCAGGCAG AAGTCTCGTG TTTGCGAGTG GTTTGATCGC 
CTGTATGCTC TTCTGGAAGA ACGCAGAGGA GATCTAACGC TGAAGATCAC AGCAGAACAG 
CAGGAGAAGC TGGATTATAT CAGTGGCCTA CAGCGCAAGT ACAGAGAGCA TCTGGATAAC 
TCAGCTAAAC TAGTGGAGAC AGGAATTCAG ACAATGGAGG AATCTGAAAT GGCTATCTTC 
CTGCAGAACA CGAAGCCTCT GCTACAACAG ATTGCAGAAA GCCGGAATGT GTCTCACTTA 
GAGAAGGTTG AGCGTGGATA TGAAAACATG GATCATTTCT CTGCAAACTT CCAGTCGGAG 
CGAAGAGCAA TCCTCAGTAT AGACTTTATC AAGGATGGGG ACGACAATGA TGAGGATGAG 
GATGATGATG AAGAAATAAC CGTAAATCCT GAGGCATCTT CAGGAGCCGC ACCTGCCCCA 
GTTCAGCAGA GACAAACCCC CGTGCCAAAT CCTTCACCAA TGGCAGCTGA CTCTGTCCAA 
ATGTCATTAA AGCCCAGCCA ATCAGCAAAC ACAAATCCGA CAGAGAACAC GCCCATAGTT 
ACACCCACTC CAGACTCCAC TCACATCCCT TCCGCAGATG CACAAGCACA GGTAACATCC 
GGTCCCGGCC AGACATCTGA TGATGGACAA CGCCACGTTT TCTCTTTCTC TTGGTTAAAT 
ATGCCAAAGT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001002358.1
CDS	131..1462
Translation	MSVTLDYCLSRSRDTMESLERQLICPICLEIFTKPVVILPCQHNLCRKCANDIFQASNPYLPTRGGSSLGSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQESSSSKPEPQVKEEVLMCEEHQDERINIYCVTCSVPTCSLCKVFGSHQTCEVAPLKSVYESQKTELSDGVGLLVGNNDRIQGIISQLEETCRSVEENGRRQKSRVCEWFDRLYALLEERRGDLTLKITAEQQEKLDYISGLQRKYREHLDNSAKLVETGIQTMEESEMAIFLQNTKPLLQQIAESRNVSHLEKVERGYENMDHFSANFQSERRAILSIDFIKDGDDNDEDEDDDEEITVNPEASSGAAPAPVQQRQTPVPNPSPMAADSVQMSLKPSQSANTNPTENTPIVTPTPDSTHIPSADAQAQVTSGPGQTSDDGQRHVFSFSWLNMPK

Target ORF information:

RefSeq Version	NM_001002358.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio tripartite motif containing 55a (trim55a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001002358.1

ORF Insert Sequence:

ATGAGCGTGA CTTTGGATTA CTGCCTCAGT AGATCGCGCG ACACCATGGA AAGTTTGGAG 
AGGCAGCTCA TTTGCCCCAT TTGCCTTGAG ATCTTCACCA AACCGGTGGT CATTTTACCG 
TGCCAGCACA ACCTCTGCCG CAAATGTGCC AACGACATCT TTCAGGCCTC AAACCCCTAC 
CTACCCACAC GGGGAGGCTC TTCACTGGGC TCCGGCGGCC GGTTCCGCTG TCCCTCCTGC 
AGACATGAAG TAGTTCTGGA CAGGCACGGG GTCTATGGCC TGCAGAGGAA CCTGCTGGTG 
GAGAATATCA TAGACATGTA CAAACAGGAG TCCAGCAGCA GTAAACCTGA GCCACAAGTG 
AAGGAAGAGG TGCTGATGTG CGAAGAGCAT CAGGACGAGA GGATTAATAT CTACTGCGTG 
ACGTGCTCTG TTCCTACTTG TTCGCTATGC AAAGTGTTCG GGAGTCATCA GACCTGTGAG 
GTCGCTCCAC TTAAATCTGT CTATGAGTCC CAGAAAACAG AGCTGTCCGA TGGCGTTGGC 
CTGTTAGTTG GAAACAATGA CAGAATTCAG GGAATTATCA GTCAGCTAGA GGAAACCTGC 
AGATCTGTGG AGGAGAACGG TCGCAGGCAG AAGTCTCGTG TTTGCGAGTG GTTTGATCGC 
CTGTATGCTC TTCTGGAAGA ACGCAGAGGA GATCTAACGC TGAAGATCAC AGCAGAACAG 
CAGGAGAAGC TGGATTATAT CAGTGGCCTA CAGCGCAAGT ACAGAGAGCA TCTGGATAAC 
TCAGCTAAAC TAGTGGAGAC AGGAATTCAG ACAATGGAGG AATCTGAAAT GGCTATCTTC 
CTGCAGAACA CGAAGCCTCT GCTACAACAG ATTGCAGAAA GCCGGAATGT GTCTCACTTA 
GAGAAGGTTG AGCGTGGATA TGAAAACATG GATCATTTCT CTGCAAACTT CCAGTCGGAG 
CGAAGAGCAA TCCTCAGTAT AGACTTTATC AAGGATGGGG ACGACAATGA TGAGGATGAG 
GATGATGATG AAGAAATAAC CGTAAATCCT GAGGCATCTT CAGGAGCCGC ACCTGCCCCA 
GTTCAGCAGA GACAAACCCC CGTGCCAAAT CCTTCACCAA TGGCAGCTGA CTCTGTCCAA 
ATGTCATTAA AGCCCAGCCA ATCAGCAAAC ACAAATCCGA CAGAGAACAC GCCCATAGTT 
ACACCCACTC CAGACTCCAC TCACATCCCT TCCGCAGATG CACAAGCACA GGTAACATCC 
GGTCCCGGCC AGACATCTGA TGATGGACAA CGCCACGTTT TCTCTTTCTC TTGGTTAAAT 
ATGCCAAAGT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The Calcineurin-FoxO-MuRF1 signaling pathway regulates myofibril integrity in cardiomyocytes.
eLife6(2017 Aug)
Shimizu H,Langenbacher AD,Huang J,Wang K,Otto G,Geisler R,Wang Y,Chen JN

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Knockdown of fast skeletal myosin-binding protein C in zebrafish results in a severe skeletal myopathy.
The Journal of general physiology147(4)309-22(2016 Apr)
Li M,Andersson-Lendahl M,Sejersen T,Arner A

Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells.
Genome biology16267(2015 Dec)
Etard C,Armant O,Roostalu U,Gourain V,Ferg M,Str?hle U

The vertebrate muscle-specific RING finger protein family includes MuRF4--a novel, conserved E3-ubiquitin ligase.
FEBS letters588(23)4390-7(2014 Nov)
Macqueen DJ,Fuentes EN,Vald?s JA,Molina A,Martin SA