chd1l cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	chd1l
Entrez Gene ID	393283
Full Name	chromodomain helicase DNA binding protein 1-like
Synonyms	zgc:56084
General protein information	Preferred Names chromodomain helicase DNA binding protein 1-like Names chromodomain-helicase-DNA-binding protein 1-like
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200313.1	NP_956607.1	chromodomain-helicase-DNA-binding protein 1-like

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Chd1l	NP_080815.1
Rattus norvegicus (Norway rat)	Chd1l	XP_006233080.1
Danio rerio (zebrafish)	chd1l	NP_956607.1
Oryza sativa (rice)	Os03g0101700	NP_001048656.1
Canis lupus familiaris (dog)	CHD1L	XP_005630931.1
Bos taurus (cattle)	CHD1L	NP_001032909.1
Homo sapiens (human)	CHD1L	NP_004275.4
Pan troglodytes (chimpanzee)	CHD1L	XP_001158033.1
Gallus gallus (chicken)	CHD1L	XP_004938249.1
Arabidopsis thaliana (thale cress)	AT2G44980	NP_973689.2

Gene Ontology
Bibliography

Related articles in PubMed

Rescue of neural crest-derived phenotypes in a zebrafish CHARGE model by Sox10 downregulation.
Asad Z, Pandey A, Babu A, Sun Y, Shevade K, Kapoor S, Ullah I, Ranjan S, Scaria V, Bajpai R, Sachidanandan C
Human molecular genetics25(16)3539-3554(2016 08)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Huang HT, Kathrein KL, Barton A, Gitlin Z, Huang YH, Ward TP, Hofmann O, Dibiase A, Song A, Tyekucheva S, Hide W, Zhou Y, Zon LI
Nature cell biology15(12)1516-25(2013 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following chd1l gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chd1l cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa37511	NM_200313.1 Latest version!	Danio rerio chromodomain helicase DNA binding protein 1-like (chd1l), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

chd1l ( NM_200313.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956607.1 Danio rerio chromodomain helicase DNA binding protein 1-like (chd1l), mRNA.

Price & Availability↑

CloneID	ODa37511
Clone ID Related Accession (Same CDS sequence)	NM_200313.1
Accession Version	NM_200313.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	chromodomain-helicase-DNA-binding protein 1-like
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC050498.1. ##Evidence-Data-START## Transcript exon combination :: BC050498.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGTCCACAT TTCTTCGAGC AGTCAGAGAC AACATACCAG AAAAGGACAA ATCTGAACTA 
ACGGAGAATG ACCTGAAGAA ATGGGGACTT GGAGCTATTC ATCTGAGGCC TTATCAGCTG 
GATGGAGTGA AGTGGCTGTC ACTGTGTATG AAGAACCAGC AGGGCTGCAT CCTCGGTGAT 
GAGATGGGTC TGGGCAAGAC CTGTCAGACC ATCTCTTTGC TGGCGTATGC TCGAGGAAGC 
CTTAAGATGA ACGGGCCGTT CCTTGTGCTT TGTCCCTTGG CTGTTTTGGA GAACTGGAGG 
CAAGAGTTGG AACGTTTCTG CCCTAGTCTG TCTGTGATCT GTTACACTGG GGATAAAGAG 
AAGAGGGCAG AGCTCCAGCA AAACCTCAAG AGTGACCCAC GGTTTCATGT TCTTCTCACC 
ACCTATGAGA TGTGCCTTAA GGATGCCCGC TACCTAAAAA GCTGGAAATG GAAGATTTTA 
GTTGTGGATG AGGCTCACCG CCTCAAGAAC CAGGAGTCAT TGCTTCACCA AACCCTCAAA 
GAGTTTACAG TGGGATTTCG AGTGCTACTG ACAGGCACCC CCATTCAGAA TAACTTACAA 
GAAGTCTATT CCCTCCTCAC CTTCATCCAG CCCAGTGTGT TTCTCCCTGA AGCTGTTGAG 
GACTTTGTCA ATGCCTACGC AGACATACAG ACTGAACCTG CTCTTGTCGA TGAGCTTCAT 
CAAGTGCTCC AGCCGTTTTT GCTGCGCAGG GTTAAGGCAG AAGTGGCGGC CGAACTGCCT 
AAGAAGACAG AGCTTGTGGT TTTTCATGGG CTGTCTGCTC TTCAGAAGAG ATACTATAAA 
GCCATTCTGA TGAGAGACCT TGATGCCTTT AGGACCGATC AAAGCACGAA GACCCGACTT 
CTGAATGTTT TAATGCAGCT CAGGAAATGT GTGGACCATC CCTACTTGTT CGATGGAGTG 
GAGCCAGAAC CGTTTGAGAT GGGGGAGCAT TTAGTGGAGG CCAGTGGAAA GCTTTCTTTG 
CTGGACAGCA TGCTGGCGTA TCTTCAGGAG GGAGGCCACC ATGTTCTTCT GTTCTCTCAG 
ATGACCAGGA TGCTGGATAT TCTGCAAGAT TACTTGGAGT ACAGAGGTTA CAGTTATGAG 
CGTCTGGATG GTTCAGTCCG TGGAGAGGAG CGTAACCTTG CTATCAAAAA CTTCAGCACC 
AAAGATGTTT TTATTTTTCT CCTCAGCACT AAAGCTGGAG GGGTCGGCAT GAACCTCACT 
GCAGCAGACA CTGTGATATT TGTGGATGGT GATTTCAACC CACAGAATGA CCTCCAAGCA 
GCAGCCAGAG CACACCGGAT TGGTCAAACA AGGCCTGTTA AAGTGATCCG ACTCCTTGGT 
AGAGATACCA TAGAAGAGAT CATCTATTCC CGCGCTGTGT CTAAGCTGCG TCTCACAGAC 
ACCGTGATCG AGGAAGGACG GTTTTCTCTT TTGGACCAGG CTCAGTCTGC AGCTTCTGGC 
CTTCAGTTAT CTGAGATCCT GAAGTTTGGT GTTGATAAGC TGCTGTCATC AGAGGAGAGC 
TCCGTTCAAG ATGTGGACCT CCAGCTGATT CTGGGTCAAT CTCGAGACGG GCAGTGGCTG 
ACGGACGAAG AGCACGCCAA GCTTAATGAG AGCAACGAAG AGGAAGATGA GGACATGGAG 
GGTCAAAACC ACATGTATTA CTTTGAGGGG AAAGACTACT CTAAAGATCC CAGCGCAGAG 
GATGAGAAGA CCTTTGAACT GTTACTTGAA AAGCAGTTTG CTGAGATGGA GGATGCTGAG 
AAGGAAGGCC GCGCACTTCG CAACAAAGCC GGGGTGTCCC TGTCTGGTCC CTTGATCAAC 
CCAGCGAGGA AGAAGAGACC TCTAACAGAA GCAGAGTTAG AAGAAAGACG TCAGAAGAGA 
CAAGCAGCTG CTGCAAAGAG GGCGAAGCTA CAGGAAGAAA GGAAGAAGCA ACAGGAAGAA 
CTAAATTACA AGAAAAAGAT GGCATGGTGG GACTCATGTG GCTACAGATC ACTGTGTTTG 
CCACGCGTCG ATAGTGAGGG TGAAGATATG GAGCCTGATG AAGATGATCA CGTCAGCTTT 
AGCTCCACCG ATTCAGATCA CACAGCCATT CGATATGTGC TGGGTGATGT AACTCATCCT 
CAAGCCGATC GAGAGGATGC CATCATTGTG CATTGTGTTG ATGACTCTGG ACACTGGGGC 
CGGGGAGGAT TATTTACTGC ACTGGGGCTC AGATCAGACG AGCCGAGGAA GCAGTACGAG 
TTGGCCGGCG ACATGAAAGA CCTAGAGCTG GGAAATGTTC TGCTTTTTCC CGTTGATGAC 
AAACAGTCGA GGCTCTGTGG AAGAGATTAC CTGGCTCTCA TAGTTGCCCA GCAGAGGGAT 
AAAGCCAACA AGTTGTCAGG CATTCGGCTC ACTGCCTTGG ATGAAGGCCT CAAGAAGATC 
TACAAAGCTG CCAAACAAAA GAAGGCAAGT GTCCATCTGC CTCGGATTGG TCATTCCACT 
AAAGGCTTCA ACTGGTACGG TACAGAGAGA CTCATTCGCA AGCACCTGGC CACCAGAGGA 
ATCTTCACAT CCATTTACTA CTACAGACGA GGATCTTCAC ACGCTACAGT GTCTTCCACT 
GCTAGCACCA CCACTCCATC AAGCTCAAAG CCTGCAGCAT CCTCACCATC TGAGTCCCCA 
CACTCCTCCA GTCCTCCGGC TAACAGAGAA GGTCTAACAA AGTCAGCAGA ACTCTCCACT 
ACATCACATG AAGGTCCGGG GGCTCCAGGG TTGGCTGACT TCATGAGAGG CGTTCATGTC 
TACTTTTATA ACATGGCTGC TACAGAGAAG AAGAAACTAA CCCGCTACCT TATCACATAT 
GATGGTGACG AAGAGGATCT CATGAGCTCA CATGTCACTC ATATTGTAGG AGAGGTAGAA 
AGTCCAGTCC ATAAACAGGA GCTCCAAGAT CTATTGCATC AGTACCCTCA GGCCCTCCTT 
GTAAAGAAAA ACTGGCTGGA GTCTTGCTTT GCCAGCCAAA GGAAAGTCAG TGTGTCTAAA 
TATGTAATTA GGTTGACTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956607.1
CDS	54..3134
Translation	MSTFLRAVRDNIPEKDKSELTENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFRTDQSTKTRLLNVLMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQLSEILKFGVDKLLSSEESSVQDVDLQLILGQSRDGQWLTDEEHAKLNESNEEEDEDMEGQNHMYYFEGKDYSKDPSAEDEKTFELLLEKQFAEMEDAEKEGRALRNKAGVSLSGPLINPARKKRPLTEAELEERRQKRQAAAAKRAKLQEERKKQQEELNYKKKMAWWDSCGYRSLCLPRVDSEGEDMEPDEDDHVSFSSTDSDHTAIRYVLGDVTHPQADREDAIIVHCVDDSGHWGRGGLFTALGLRSDEPRKQYELAGDMKDLELGNVLLFPVDDKQSRLCGRDYLALIVAQQRDKANKLSGIRLTALDEGLKKIYKAAKQKKASVHLPRIGHSTKGFNWYGTERLIRKHLATRGIFTSIYYYRRGSSHATVSSTASTTTPSSSKPAASSPSESPHSSSPPANREGLTKSAELSTTSHEGPGAPGLADFMRGVHVYFYNMAATEKKKLTRYLITYDGDEEDLMSSHVTHIVGEVESPVHKQELQDLLHQYPQALLVKKNWLESCFASQRKVSVSKYVIRLT

Target ORF information:

RefSeq Version	NM_200313.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio chromodomain helicase DNA binding protein 1-like (chd1l), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200313.1

ORF Insert Sequence:

ATGTCCACAT TTCTTCGAGC AGTCAGAGAC AACATACCAG AAAAGGACAA ATCTGAACTA 
ACGGAGAATG ACCTGAAGAA ATGGGGACTT GGAGCTATTC ATCTGAGGCC TTATCAGCTG 
GATGGAGTGA AGTGGCTGTC ACTGTGTATG AAGAACCAGC AGGGCTGCAT CCTCGGTGAT 
GAGATGGGTC TGGGCAAGAC CTGTCAGACC ATCTCTTTGC TGGCGTATGC TCGAGGAAGC 
CTTAAGATGA ACGGGCCGTT CCTTGTGCTT TGTCCCTTGG CTGTTTTGGA GAACTGGAGG 
CAAGAGTTGG AACGTTTCTG CCCTAGTCTG TCTGTGATCT GTTACACTGG GGATAAAGAG 
AAGAGGGCAG AGCTCCAGCA AAACCTCAAG AGTGACCCAC GGTTTCATGT TCTTCTCACC 
ACCTATGAGA TGTGCCTTAA GGATGCCCGC TACCTAAAAA GCTGGAAATG GAAGATTTTA 
GTTGTGGATG AGGCTCACCG CCTCAAGAAC CAGGAGTCAT TGCTTCACCA AACCCTCAAA 
GAGTTTACAG TGGGATTTCG AGTGCTACTG ACAGGCACCC CCATTCAGAA TAACTTACAA 
GAAGTCTATT CCCTCCTCAC CTTCATCCAG CCCAGTGTGT TTCTCCCTGA AGCTGTTGAG 
GACTTTGTCA ATGCCTACGC AGACATACAG ACTGAACCTG CTCTTGTCGA TGAGCTTCAT 
CAAGTGCTCC AGCCGTTTTT GCTGCGCAGG GTTAAGGCAG AAGTGGCGGC CGAACTGCCT 
AAGAAGACAG AGCTTGTGGT TTTTCATGGG CTGTCTGCTC TTCAGAAGAG ATACTATAAA 
GCCATTCTGA TGAGAGACCT TGATGCCTTT AGGACCGATC AAAGCACGAA GACCCGACTT 
CTGAATGTTT TAATGCAGCT CAGGAAATGT GTGGACCATC CCTACTTGTT CGATGGAGTG 
GAGCCAGAAC CGTTTGAGAT GGGGGAGCAT TTAGTGGAGG CCAGTGGAAA GCTTTCTTTG 
CTGGACAGCA TGCTGGCGTA TCTTCAGGAG GGAGGCCACC ATGTTCTTCT GTTCTCTCAG 
ATGACCAGGA TGCTGGATAT TCTGCAAGAT TACTTGGAGT ACAGAGGTTA CAGTTATGAG 
CGTCTGGATG GTTCAGTCCG TGGAGAGGAG CGTAACCTTG CTATCAAAAA CTTCAGCACC 
AAAGATGTTT TTATTTTTCT CCTCAGCACT AAAGCTGGAG GGGTCGGCAT GAACCTCACT 
GCAGCAGACA CTGTGATATT TGTGGATGGT GATTTCAACC CACAGAATGA CCTCCAAGCA 
GCAGCCAGAG CACACCGGAT TGGTCAAACA AGGCCTGTTA AAGTGATCCG ACTCCTTGGT 
AGAGATACCA TAGAAGAGAT CATCTATTCC CGCGCTGTGT CTAAGCTGCG TCTCACAGAC 
ACCGTGATCG AGGAAGGACG GTTTTCTCTT TTGGACCAGG CTCAGTCTGC AGCTTCTGGC 
CTTCAGTTAT CTGAGATCCT GAAGTTTGGT GTTGATAAGC TGCTGTCATC AGAGGAGAGC 
TCCGTTCAAG ATGTGGACCT CCAGCTGATT CTGGGTCAAT CTCGAGACGG GCAGTGGCTG 
ACGGACGAAG AGCACGCCAA GCTTAATGAG AGCAACGAAG AGGAAGATGA GGACATGGAG 
GGTCAAAACC ACATGTATTA CTTTGAGGGG AAAGACTACT CTAAAGATCC CAGCGCAGAG 
GATGAGAAGA CCTTTGAACT GTTACTTGAA AAGCAGTTTG CTGAGATGGA GGATGCTGAG 
AAGGAAGGCC GCGCACTTCG CAACAAAGCC GGGGTGTCCC TGTCTGGTCC CTTGATCAAC 
CCAGCGAGGA AGAAGAGACC TCTAACAGAA GCAGAGTTAG AAGAAAGACG TCAGAAGAGA 
CAAGCAGCTG CTGCAAAGAG GGCGAAGCTA CAGGAAGAAA GGAAGAAGCA ACAGGAAGAA 
CTAAATTACA AGAAAAAGAT GGCATGGTGG GACTCATGTG GCTACAGATC ACTGTGTTTG 
CCACGCGTCG ATAGTGAGGG TGAAGATATG GAGCCTGATG AAGATGATCA CGTCAGCTTT 
AGCTCCACCG ATTCAGATCA CACAGCCATT CGATATGTGC TGGGTGATGT AACTCATCCT 
CAAGCCGATC GAGAGGATGC CATCATTGTG CATTGTGTTG ATGACTCTGG ACACTGGGGC 
CGGGGAGGAT TATTTACTGC ACTGGGGCTC AGATCAGACG AGCCGAGGAA GCAGTACGAG 
TTGGCCGGCG ACATGAAAGA CCTAGAGCTG GGAAATGTTC TGCTTTTTCC CGTTGATGAC 
AAACAGTCGA GGCTCTGTGG AAGAGATTAC CTGGCTCTCA TAGTTGCCCA GCAGAGGGAT 
AAAGCCAACA AGTTGTCAGG CATTCGGCTC ACTGCCTTGG ATGAAGGCCT CAAGAAGATC 
TACAAAGCTG CCAAACAAAA GAAGGCAAGT GTCCATCTGC CTCGGATTGG TCATTCCACT 
AAAGGCTTCA ACTGGTACGG TACAGAGAGA CTCATTCGCA AGCACCTGGC CACCAGAGGA 
ATCTTCACAT CCATTTACTA CTACAGACGA GGATCTTCAC ACGCTACAGT GTCTTCCACT 
GCTAGCACCA CCACTCCATC AAGCTCAAAG CCTGCAGCAT CCTCACCATC TGAGTCCCCA 
CACTCCTCCA GTCCTCCGGC TAACAGAGAA GGTCTAACAA AGTCAGCAGA ACTCTCCACT 
ACATCACATG AAGGTCCGGG GGCTCCAGGG TTGGCTGACT TCATGAGAGG CGTTCATGTC 
TACTTTTATA ACATGGCTGC TACAGAGAAG AAGAAACTAA CCCGCTACCT TATCACATAT 
GATGGTGACG AAGAGGATCT CATGAGCTCA CATGTCACTC ATATTGTAGG AGAGGTAGAA 
AGTCCAGTCC ATAAACAGGA GCTCCAAGAT CTATTGCATC AGTACCCTCA GGCCCTCCTT 
GTAAAGAAAA ACTGGCTGGA GTCTTGCTTT GCCAGCCAAA GGAAAGTCAG TGTGTCTAAA 
TATGTAATTA GGTTGACTTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Rescue of neural crest-derived phenotypes in a zebrafish CHARGE model by Sox10 downregulation.
Human molecular genetics25(16)3539-3554(2016 08)
Asad Z,Pandey A,Babu A,Sun Y,Shevade K,Kapoor S,Ullah I,Ranjan S,Scaria V,Bajpai R,Sachidanandan C

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Nature cell biology15(12)1516-25(2013 Dec)
Huang HT,Kathrein KL,Barton A,Gitlin Z,Huang YH,Ward TP,Hofmann O,Dibiase A,Song A,Tyekucheva S,Hide W,Zhou Y,Zon LI

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chd1l cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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