Gene Symbol | LOC100006889 |
Entrez Gene ID | 100006889 |
Full Name | E3 ubiquitin-protein ligase RBBP6-like |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » LOC100006889 cDNA ORF clone
Gene Symbol | LOC100006889 |
Entrez Gene ID | 100006889 |
Full Name | E3 ubiquitin-protein ligase RBBP6-like |
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001309641.1 | NP_001296570.1 | E3 ubiquitin-protein ligase RBBP6-like |
XM_009304098.3 | XP_009302373.1 | E3 ubiquitin-protein ligase RBBP6-like isoform X1 |
XM_009304098.2 | XP_009302373.1 | E3 ubiquitin-protein ligase RBBP6-like isoform X1 |
Danio rerio (zebrafish) | LOC100536738 | XP_003199154.2 |
Danio rerio (zebrafish) | LOC100535429 | XP_003199147.1 |
Danio rerio (zebrafish) | LOC100007007 | XP_001923650.3 |
Danio rerio (zebrafish) | LOC573060 | XP_001923880.1 |
Danio rerio (zebrafish) | LOC100536891 | XP_003199490.2 |
Danio rerio (zebrafish) | LOC100537627 | XP_005155810.1 |
Danio rerio (zebrafish) | LOC100537692 | XP_003199501.1 |
Danio rerio (zebrafish) | LOC561730 | XP_003199485.1 |
Danio rerio (zebrafish) | LOC100535666 | XP_005169125.1 |
Danio rerio (zebrafish) | zgc:77614 | NP_957188.1 |
Danio rerio (zebrafish) | LOC100535791 | XP_003201553.1 |
Danio rerio (zebrafish) | LOC100535871 | XP_003201555.1 |
Danio rerio (zebrafish) | LOC100329825 | XP_005167263.1 |
Danio rerio (zebrafish) | LOC100536044 | XP_003201559.1 |
Danio rerio (zebrafish) | LOC100536143 | XP_003201561.1 |
Danio rerio (zebrafish) | zgc:174354 | NP_001104622.2 |
Danio rerio (zebrafish) | LOC100535522 | XP_003199148.1 |
Danio rerio (zebrafish) | LOC795381 | XP_001923218.3 |
Danio rerio (zebrafish) | zgc:174355 | XP_003199480.1 |
Danio rerio (zebrafish) | zgc:174353 | XP_003199483.1 |
Danio rerio (zebrafish) | LOC100537156 | XP_003199493.2 |
Danio rerio (zebrafish) | LOC100004008 | XP_001923176.2 |
Danio rerio (zebrafish) | LOC100005013 | XP_003199478.1 |
Danio rerio (zebrafish) | LOC100005157 | XP_003199477.1 |
Danio rerio (zebrafish) | LOC100535919 | XP_003201556.1 |
Danio rerio (zebrafish) | LOC100329994 | XP_002663208.3 |
Danio rerio (zebrafish) | zgc:173948 | XP_003197711.1 |
Danio rerio (zebrafish) | LOC100535555 | XP_003199149.1 |
Danio rerio (zebrafish) | si:busm1-37i06.3 | XP_003199145.1 |
Danio rerio (zebrafish) | LOC100535224 | XP_003199144.1 |
Danio rerio (zebrafish) | LOC100007069 | XP_001923623.1 |
Danio rerio (zebrafish) | LOC100005062 | XP_001340029.1 |
Danio rerio (zebrafish) | LOC101882036 | XP_005167274.1 |
Danio rerio (zebrafish) | LOC561873 | XP_708812.2 |
Danio rerio (zebrafish) | LOC101885891 | XP_005167265.1 |
Danio rerio (zebrafish) | LOC101882874 | XP_005169132.1 |
Danio rerio (zebrafish) | LOC100329755 | XP_002663205.3 |
Danio rerio (zebrafish) | LOC100329676 | XP_002663204.3 |
Danio rerio (zebrafish) | LOC100535960 | XP_003201557.1 |
Danio rerio (zebrafish) | LOC100536005 | XP_003201558.1 |
Danio rerio (zebrafish) | si:rp71-45g20.4 | XP_001920893.3 |
Danio rerio (zebrafish) | LOC100005207 | XP_001340373.2 |
Danio rerio (zebrafish) | LOC100002202 | XP_001923811.3 |
Danio rerio (zebrafish) | LOC100006401 | XP_001923666.3 |
Danio rerio (zebrafish) | LOC100006751 | XP_001923847.1 |
Danio rerio (zebrafish) | LOC100006815 | XP_001923869.1 |
Danio rerio (zebrafish) | si:rp71-45g20.11 | XP_001920294.3 |
Danio rerio (zebrafish) | zgc:173949 | XP_003199271.1 |
Danio rerio (zebrafish) | LOC100148590 | XP_001923244.1 |
Danio rerio (zebrafish) | LOC100004392 | XP_005155830.1 |
Danio rerio (zebrafish) | LOC100537745 | XP_003199503.2 |
Danio rerio (zebrafish) | LOC100535834 | XP_003201554.1 |
Danio rerio (zebrafish) | LOC100329917 | XP_002663207.3 |
Danio rerio (zebrafish) | LOC100536094 | XP_003201560.1 |
Danio rerio (zebrafish) | zgc:174356 | NP_001108189.1 |
Danio rerio (zebrafish) | LOC100151406 | XP_001923226.2 |
Danio rerio (zebrafish) | LOC100535710 | XP_003201551.1 |
Danio rerio (zebrafish) | LOC100536964 | XP_005167267.1 |
Danio rerio (zebrafish) | LOC100006773 | XP_001923849.1 |
Danio rerio (zebrafish) | LOC100006889 | XP_005167254.1 |
Danio rerio (zebrafish) | LOC100007049 | XP_001923628.1 |
Danio rerio (zebrafish) | LOC100537403 | XP_003199494.1 |
Danio rerio (zebrafish) | LOC100004867 | XP_001339523.2 |
Danio rerio (zebrafish) | LOC100537805 | XP_003199505.2 |
Danio rerio (zebrafish) | zgc:174358 | XP_003199506.1 |
Danio rerio (zebrafish) | LOC100536275 | XP_003201563.2 |
Danio rerio (zebrafish) | LOC100536186 | XP_005169134.1 |
Danio rerio (zebrafish) | LOC101885389 | XP_005167264.1 |
Danio rerio (zebrafish) | LOC573077 | XP_001923125.2 |
Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain.
Sreenivasan R, Cai M, Bartfai R, Wang X, Christoffels A, Orban L
PloS one3(3)e1791(2008 Mar)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100006889 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100006889 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa14411 | |
Clone ID Related Accession (Same CDS sequence) | NM_001309641.1 | |
Accession Version | NM_001309641.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 522bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-09-28 | |
Organism | Danio rerio(zebrafish) | |
Product | E3 ubiquitin-protein ligase RBBP6-like | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX005399.30. On Jun 11, 2015 this sequence version replaced XM_001923844.5. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001296570.1 |
CDS | 215..736 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001309641.1 |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa40556 | |
Clone ID Related Accession (Same CDS sequence) | XM_009304098.3 , XM_009304098.2 | |
Accession Version | XM_009304098.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 648bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | E3 ubiquitin-protein ligase RBBP6-like isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009304098.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302373.1 |
CDS | 499..1146 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009304098.3 |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa40556 | |
Clone ID Related Accession (Same CDS sequence) | XM_009304098.3 , XM_009304098.2 | |
Accession Version | XM_009304098.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 648bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | E3 ubiquitin-protein ligase RBBP6-like isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007119.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009304098.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009302373.1 |
CDS | 391..1038 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009304098.2 |
1 | ATGTCTTGTG TTCACTACAG GTTCCAGAGT CGACTCACCT ACGACTCGCT CCAGTTTGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. |