Gene Symbol | LOC100005187 |
Entrez Gene ID | 100005187 |
Full Name | phosphatidylinositol-binding clathrin assembly protein |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » LOC100005187 cDNA ORF clone
Gene Symbol | LOC100005187 |
Entrez Gene ID | 100005187 |
Full Name | phosphatidylinositol-binding clathrin assembly protein |
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_001344267.8 | XP_001344303.5 | phosphatidylinositol-binding clathrin assembly protein isoform X2 |
XM_017353027.1 | XP_017208516.1 | phosphatidylinositol-binding clathrin assembly protein-like isoform X2 |
XM_021469187.1 | XP_021324862.1 | phosphatidylinositol-binding clathrin assembly protein isoform X1 |
XM_021469188.1 | XP_021324863.1 | phosphatidylinositol-binding clathrin assembly protein isoform X4 |
XM_001344267.7 | XP_001344303.5 | phosphatidylinositol-binding clathrin assembly protein-like isoform X1 |
NM_001366697.1 | NP_001353626.1 | wu:fj42b12 |
XM_017353027.2 | XP_017208516.1 | phosphatidylinositol-binding clathrin assembly protein isoform X3 |
Gallus gallus (chicken) | LOC772071 | NP_001073230.1 |
Danio rerio (zebrafish) | LOC100005187 | XP_001344303.5 |
Caenorhabditis elegans (roundworm) | unc-11 | NP_491228.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100005187 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100005187 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa26050 | |
Clone ID Related Accession (Same CDS sequence) | XM_001344267.8 , XM_001344267.7 | |
Accession Version | XM_001344267.8 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 951bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_001344267.7. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_001344303.5 |
CDS | 1..951 |
Translation |
Target ORF information:
Target ORF information:
|
XM_001344267.8 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa26050 | |
Clone ID Related Accession (Same CDS sequence) | XM_001344267.8 , XM_001344267.7 | |
Accession Version | XM_001344267.7 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 951bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein-like isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_001344267.6. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_001344303.5 |
CDS | 647..1597 |
Translation |
Target ORF information:
Target ORF information:
|
XM_001344267.7 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa151099 | |
Clone ID Related Accession (Same CDS sequence) | XM_021469187.1 | |
Accession Version | XM_021469187.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1128bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021324862.1 |
CDS | 672..1799 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021469187.1 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa151100 | |
Clone ID Related Accession (Same CDS sequence) | XM_021469188.1 | |
Accession Version | XM_021469188.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 807bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021324863.1 |
CDS | 1..807 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021469188.1 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56969 | |
Clone ID Related Accession (Same CDS sequence) | XM_017353027.1 , XM_017353027.2 | |
Accession Version | XM_017353027.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 909bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein-like isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017208516.1 |
CDS | 647..1555 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017353027.1 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56969 | |
Clone ID Related Accession (Same CDS sequence) | XM_017353027.1 , XM_017353027.2 | |
Accession Version | XM_017353027.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 909bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | phosphatidylinositol-binding clathrin assembly protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007132.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017353027.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017208516.1 |
CDS | 1..909 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017353027.2 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa159782 | |
Clone ID Related Accession (Same CDS sequence) | NM_001366697.1 | |
Accession Version | NM_001366697.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1662bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-03-21 | |
Organism | Danio rerio(zebrafish) | |
Product | wu:fj42b12 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT025910.8 and GFIL01021875.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01021875.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001353626.1 |
CDS | 675..2336 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001366697.1 |
1 | ATGTCGGGAC AGTCCATCAC GGACCGGATC GCCGCGGCTC AGCACAGCAT GACCGGATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |