Gene Symbol | HIGD1A |
Entrez Gene ID | 100629311 |
Full Name | HIG1 hypoxia inducible domain family member 1A |
Gene Type | protein-coding |
Organism | Equus caballus(horse) |
ORF » Species Summary » Equus caballus » HIGD1A cDNA ORF clone
Gene Symbol | HIGD1A |
Entrez Gene ID | 100629311 |
Full Name | HIG1 hypoxia inducible domain family member 1A |
Gene Type | protein-coding |
Organism | Equus caballus(horse) |
mRNA | Protein | Name |
---|---|---|
XM_005600795.3 | XP_005600852.1 | HIG1 domain family member 1A, mitochondrial isoform X1 |
NM_001308955.1 | NP_001295884.1 | HIG1 domain family member 1A, mitochondrial |
XM_005600795.2 | XP_005600852.1 | HIG1 domain family member 1A, mitochondrial isoform X1 |
XM_023619825.1 | XP_023475593.1 | HIG1 domain family member 1A, mitochondrial isoform X1 |
NM_001308955.2 | NP_001295884.1 | HIG1 domain family member 1A, mitochondrial |
Annotation of the Protein Coding Regions of the Equine Genome.
Hestand MS, Kalbfleisch TS, Coleman SJ, Zeng Z, Liu J, Orlando L, MacLeod JN
PloS one10(6)e0124375(2015)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following HIGD1A gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HIGD1A cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OHb07237 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600795.3 , NM_001308955.1 , XM_005600795.2 , XM_023619825.1 , NM_001308955.2 | |
Accession Version | NM_001308955.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-22 | |
Organism | Equus caballus(horse) | |
Product | HIG1 domain family member 1A, mitochondrial | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AAWR02008630.1 and JL641304.1. On May 19, 2015 this sequence version replaced XM_005600794.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: JL641304.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2008637, SAMEA2452530 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295884.1 |
CDS | 79..360 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001308955.1 |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb07237 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600795.3 , NM_001308955.1 , XM_005600795.2 , XM_023619825.1 , NM_001308955.2 | |
Accession Version | NM_001308955.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-12-20 | |
Organism | Equus caballus(horse) | |
Product | HIG1 domain family member 1A, mitochondrial | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from PJAA01000017.1. On Dec 21, 2018 this sequence version replaced NM_001308955.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: JL641304.1, GDHK01050809.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2452530, SAMEA2452531 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295884.1 |
CDS | 79..360 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001308955.2 |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb07237 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600795.3 , NM_001308955.1 , XM_005600795.2 , XM_023619825.1 , NM_001308955.2 | |
Accession Version | XM_005600795.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-01-22 | |
Organism | Equus caballus(horse) | |
Product | HIG1 domain family member 1A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009159.3) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 23, 2018 this sequence version replaced XM_005600795.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005600852.1 |
CDS | 165..446 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005600795.3 |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb07237 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600795.3 , NM_001308955.1 , XM_005600795.2 , XM_023619825.1 , NM_001308955.2 | |
Accession Version | XM_005600795.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-11-19 | |
Organism | Equus caballus(horse) | |
Product | HIG1 domain family member 1A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_001867381.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 20, 2015 this sequence version replaced XM_005600795.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Equus caballus Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005600852.1 |
CDS | 105..386 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005600795.2 |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHb07237 | |
Clone ID Related Accession (Same CDS sequence) | XM_005600795.3 , NM_001308955.1 , XM_005600795.2 , XM_023619825.1 , NM_001308955.2 | |
Accession Version | XM_023619825.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-01-22 | |
Organism | Equus caballus(horse) | |
Product | HIG1 domain family member 1A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009159.3) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023475593.1 |
CDS | 40..321 |
Translation |
Target ORF information:
Target ORF information:
|
XM_023619825.1 |
1 | ATGTCGACCA ACACAGATGT ATCTCTTTCT TCATATGATG AAGATCAGGG ATCTAAACTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Annotation of the Protein Coding Regions of the Equine Genome. |