smpd1 cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

The following smpd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the smpd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa19913 XM_018090489.1
Latest version!
Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OXa19913 XM_002943500.4
Latest version!
Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OXa53092 XM_002943500.5
Latest version!
Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    CloneID OXa19913
    Clone ID Related Accession (Same CDS sequence) XM_002943500.4 , XM_018090489.1
    Accession Version XM_002943500.4 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1749bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2016-09-07
    Organism Xenopus tropicalis(tropical clawed frog)
    Product sphingomyelin phosphodiesterase
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016684115.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_002943500.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACGCG CGCCGATCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC ATTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGTA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002943546.1
    CDS659..2407
    Translation

    Target ORF information:

    RefSeq Version XM_002943500.4
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_002943500.4

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACGCG CGCCGATCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC ATTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGTA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OXa19913
    Clone ID Related Accession (Same CDS sequence) XM_002943500.4 , XM_018090489.1
    Accession Version XM_018090489.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1749bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2016-09-07
    Organism Xenopus tropicalis(tropical clawed frog)
    Product sphingomyelin phosphodiesterase
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016684115.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACGCG CGCCGATCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC ATTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGTA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_017945978.1
    CDS548..2296
    Translation

    Target ORF information:

    RefSeq Version XM_018090489.1
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_018090489.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACGCG CGCCGATCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC ATTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGTA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OXa53092
    Clone ID Related Accession (Same CDS sequence) XM_002943500.5
    Accession Version XM_002943500.5 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1749bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-17
    Organism Xenopus tropicalis(tropical clawed frog)
    Product sphingomyelin phosphodiesterase
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030678.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_002943500.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACACG CGCCGACCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC GTTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGAA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002943546.1
    CDS383..2131
    Translation

    Target ORF information:

    RefSeq Version XM_002943500.5
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis sphingomyelin phosphodiesterase 1 (smpd1), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_002943500.5

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGCATTCCG TTAGGGGGTT CCTCGCTGTG ATGATTTTTG CCTCAGTGGC ATCCGGTTTG 
    CCAGTCCCAG ACAAGTTACT TGCCCCCCCC ACACTGCACT CCTACTTGCA CCAGCTGGGG
    GCAGGCTATG GGTGGCGCAA TCTCACCTGC CCCATCTGCA AAGTGTTGTT CGCTGCCCTG
    GATATCAGCC TGGAGGTAGA CAGTAACAAG GAGATGGTGG CCTCGCTGGC AGAGCGGGTG
    TGCATGGCGC TGCGGCTGGC AGAGCCCAGT GTGTGCCAAC AGACCATTCA GCTCTTTAAG
    AAGGATATCA TCACGGCGTG GGTCCTGTCG GTTCTGCGCC CGTCGGAGAT CTGCGGCTTA
    TTGGTTGGCG CTGACTGTGG GGTGTGGGAC ATTGGCTCAA ACTGGAACAT TTCTTTGCCC
    AATAAGCCCA AACCCCCAGT GGTTCCGCCC GTGCCCCCCA CGCCTGGCTC TCCTGTGTCC
    AGAGTCCTTT TCCTAACGGA TCTGCACTGG GACCGGCAGT ACCTGCCCGG GAGTTCTGCC
    AGCTGCCAGG AGCCTCTGTG CTGCCGGATG CCCCCAGCTC ATAACCAGAG CGGGGCAGGG
    TACTGGGGCA CCTACAGTAA GTGTGACTTA CCCCTACACA CCATTGAGTC CCTGCTGCGC
    CAAGTCTCTG CCCAGGGGCC CTACCAGGCG GTGTATTGGA CTGGCGACAT CCCCGCCCAC
    AACGTGTGGC AGCAAACACG CGCCGACCAA CTGGACGCTC TAAGGACCCT CACTGGTCTC
    ATCCGCAAGT ACCTGGGCGC TGTGCCCGTG TACCCGGCTG TGGGCAACCA CGAGAGCACC
    CCCGTCAACA GCTTCCCACC TCCTTATGTG CAAGGGAACC TGTCCTCCCA TTGGCTGTAT
    CACAGCATGG CACAGGAGTG GCACCACTGG CTGCCCCAGT CTGCCCTCAG CACTCTCAGG
    ACTGCGGGGT TCTACACTGT GCCAATTGGC CCCCGGTTGC GCCTGGTGTC TCTGAACATG
    AATTTCTGTG ATTTGGGGAA TTTCTGGCTG CTGATTAATT ACACCGACCC GGCGGGGCAG
    TTACAGTGGT TGGTGGAGGT GTTACAGGAG GCCGAAGAAA AGGGAGAGAA GGTCCATATC
    ATTGGCCACA TCCCCCCCGG GCTCTGCCTC AAAAGCTGGA GCTGGAATTA TTATCGGATT
    GTGAACAGGT ATGAGAGCAC CATTGCTGCA CAGTTTTTCG GACACACCCA TTTGGATGAA
    TTTGAGATGT TTTATGATGA GGAGACTCTG ACGCGCCCCG TGTCTGTGGC GTTCATTTCT
    CCCAGCGTTA CTACCTTCAT AAACCTGAAC CCAGGCTACC GCGTGTACCA GATAGACGGC
    GAGTACCCAG AGAGCTCCCA CATGGTGTTG GACCACGAGA CCTACATACT GAACCTGACG
    GAGGCCAATG CCCGGCCGGG CCAGGACCCC CGCTGGACCC TACTATACCG CGCCCTCGAG
    ACCTACGGAA TGAAATCGGC ATTTCCAGCC GACTGGGAGC TGCTTACTCG CCGGTTCCTG
    CAGGATGAGA GGTTGTTTCA GACCTTCTGG TACCTGCACC ACAAGGGCCA CGTGGACGAG
    GTGTGCCAGG AGAACTGTAA GACTACGCTG CTGTGCGCCC TCCGCTCCGG CAGGTCCTCG
    GACCCTGAGC TGTGTAAGGA CCTGCTCCTC CCTGGGAAGC CCCTCTGGGA AAGGAAACAG
    TTTTGCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.