Gene Symbol | SMN1 |
Entrez Gene ID | 100170853 |
Full Name | survival of motor neuron 1, telomeric |
Synonyms | SMN |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
ORF » Species Summary » Sus scrofa » SMN1 cDNA ORF clone
Gene Symbol | SMN1 |
Entrez Gene ID | 100170853 |
Full Name | survival of motor neuron 1, telomeric |
Synonyms | SMN |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
mRNA | Protein | Name |
---|---|---|
XM_013984845.1 | XP_013840299.1 | survival motor neuron protein isoform X2 |
NM_001130735.1 | NP_001124207.1 | survival motor neuron protein |
XM_013984846.1 | XP_013840300.1 | survival motor neuron protein isoform X3 |
XM_005672519.2 | XP_005672576.1 | survival motor neuron protein isoform X1 |
SMN Blood Levels in a Porcine Model of Spinal Muscular Atrophy.
Iyer CC, Wang X, Renusch SR, Duque SI, Wehr AM, Mo XM, McGovern VL, Arnold WD, Burghes AH, Kolb SJ
Journal of neuromuscular diseases4(1)59-66(2017)
Absence of an intron splicing silencer in porcine Smn1 intron 7 confers immunity to the exon skipping mutation in human SMN2.
Doktor TK, Schr?der LD, Andersen HS, Br?ner S, Kitewska A, S?rensen CB, Andresen BS
PloS one9(6)e98841(2014)
Identification and characterization of the porcine (Sus scrofa) survival motor neuron (SMN1) gene: an animal model for therapeutic studies.
Lorson MA, Spate LD, Prather RS, Lorson CL
Developmental dynamics : an official publication of the American Association of Anatomists237(8)2268-78(2008 Aug)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
first cloning and identification of the swine SMN1 gene and show that there is significant sequence homology between swine and human SMN throughout the coding region
Title: Identification and characterization of the porcine (Sus scrofa) survival motor neuron (SMN1) gene: an animal model for therapeutic studies.
The following SMN1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SMN1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe00839 | |
Clone ID Related Accession (Same CDS sequence) | NM_001130735.1 | |
Accession Version | NM_001130735.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-27 | |
Organism | Sus scrofa(pig) | |
Product | survival motor neuron protein | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU791616.1. ##Evidence-Data-START## Transcript exon combination :: EU791616.1, FS665357.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1487420, SAMEA1876824 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001124207.1 |
CDS | 1..882 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001130735.1 |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe24342 | |
Clone ID Related Accession (Same CDS sequence) | XM_005672519.2 | |
Accession Version | XM_005672519.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-12 | |
Organism | Sus scrofa(pig) | |
Product | survival motor neuron protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010458.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005672519.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005672576.1 |
CDS | 62..943 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005672519.2 |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe44424 | |
Clone ID Related Accession (Same CDS sequence) | XM_013984845.1 | |
Accession Version | XM_013984845.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 810bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-05-12 | |
Organism | Sus scrofa(pig) | |
Product | survival motor neuron protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010458.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_013840299.1 |
CDS | 64..873 |
Translation |
Target ORF information:
Target ORF information:
|
XM_013984845.1 |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe44425 | |
Clone ID Related Accession (Same CDS sequence) | XM_013984846.1 | |
Accession Version | XM_013984846.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 681bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-09-10 | |
Organism | Sus scrofa(Pig) | |
Product | survival motor neuron protein isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612438.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_013840300.1 |
CDS | 64..744 |
Translation |
Target ORF information:
Target ORF information:
|
XM_013984846.1 |
1 | ATGGCGATGG GCGGCGGTGG CGGCGGCAGC GGTGTTCCTG AGGCGGAGGA CTCGGTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
SMN Blood Levels in a Porcine Model of Spinal Muscular Atrophy. |
Absence of an intron splicing silencer in porcine Smn1 intron 7 confers immunity to the exon skipping mutation in human SMN2. |
Identification and characterization of the porcine (Sus scrofa) survival motor neuron (SMN1) gene: an animal model for therapeutic studies. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |