| Gene Symbol | HMGA1 |
| Entrez Gene ID | 100157848 |
| Full Name | high mobility group AT-hook 1 |
| Synonyms | HMG-I(Y) |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
ORF » Species Summary » Sus scrofa » HMGA1 cDNA ORF clone
| Gene Symbol | HMGA1 |
| Entrez Gene ID | 100157848 |
| Full Name | high mobility group AT-hook 1 |
| Synonyms | HMG-I(Y) |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
| mRNA | Protein | Name |
|---|---|---|
| XM_021098126.1 | XP_020953785.1 | high mobility group protein HMG-I/HMG-Y isoform X1 |
| XM_021098125.1 | XP_020953784.1 | high mobility group protein HMG-I/HMG-Y isoform X1 |
| NM_001185154.1 | NP_001172083.1 | high mobility group protein HMG-I/HMG-Y isoform 1 |
| NM_001185155.1 | NP_001172084.1 | high mobility group protein HMG-I/HMG-Y isoform 2 |
Genome-wide association analyses reveal significant loci and strong candidate genes for growth and fatness traits in two pig populations.
Qiao R, Gao J, Zhang Z, Li L, Xie X, Fan Y, Cui L, Ma J, Ai H, Ren J, Huang L
Genetics, selection, evolution : GSE4717(2015 Mar)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
Association of melanocortin 4 receptor (MC4R) and high mobility group AT-hook 1 (HMGA1) polymorphisms with pig growth and fat deposition traits.
Kim KS, Lee JJ, Shin HY, Choi BH, Lee CK, Kim JJ, Cho BW, Kim TH
Animal genetics37(4)419-21(2006 Aug)
A physical map of large segments of pig chromosome 7q11-q14: comparative analysis with human chromosome 6p21.
Barbosa A, Demeure O, Urien C, Milan D, Chardon P, Renard C
Mammalian genome : official journal of the International Mammalian Genome Society15(12)982-95(2004 Dec)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
distinct loci exist for growth and fatness in the two populations and identified HMGA1 and PLAG1 as strong candidate genes on SSC7 and SSC4, respectively.
Title: Genome-wide association analyses reveal significant loci and strong candidate genes for growth and fatness traits in two pig populations.
Characterization of polymorphisms in the HMGA1 gene in relation to growth and fat deposition.
Title: Association of melanocortin 4 receptor (MC4R) and high mobility group AT-hook 1 (HMGA1) polymorphisms with pig growth and fat deposition traits.
The following HMGA1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HMGA1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe00456 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021098126.1 , XM_021098125.1 , NM_001185155.1 | |
| Accession Version | NM_001185155.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 324bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-12-23 | |
| Organism | Sus scrofa(pig) | |
| Product | high mobility group protein HMG-I/HMG-Y isoform 2 | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK238937.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a longer protein (isoform 2), compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK238937.1 [ECO:0000332] ##Evidence-Data-END## | |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001172084.1 |
| CDS | 246..569 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001185155.1 |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe00460 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001185154.1 | |
| Accession Version | NM_001185154.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 291bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-12-23 | |
| Organism | Sus scrofa(pig) | |
| Product | high mobility group protein HMG-I/HMG-Y isoform 1 | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK236172.1. On or before Jun 9, 2010 this sequence version replaced XM_001928400.1, XM_001928415.1. Transcript Variant: This variant (1) represents the shorter transcript and encodes the shorter isoform (1). ##Evidence-Data-START## Transcript exon combination :: AK236172.1 [ECO:0000332] ##Evidence-Data-END## | |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001172083.1 |
| CDS | 245..535 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001185154.1 |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe00456 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021098126.1 , XM_021098125.1 , NM_001185155.1 | |
| Accession Version | XM_021098126.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 324bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | high mobility group protein HMG-I/HMG-Y isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020953785.1 |
| CDS | 171..494 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021098126.1 |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe00456 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021098126.1 , XM_021098125.1 , NM_001185155.1 | |
| Accession Version | XM_021098125.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 324bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | high mobility group protein HMG-I/HMG-Y isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010449.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020953784.1 |
| CDS | 294..617 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021098125.1 |
1 | ATGAGCGAGT CGAGCTCGAA GTCTAGCCAG CCCTTGGCCT CCAAGCAGGA AAAGGACGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Genome-wide association analyses reveal significant loci and strong candidate genes for growth and fatness traits in two pig populations. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
Association of melanocortin 4 receptor (MC4R) and high mobility group AT-hook 1 (HMGA1) polymorphisms with pig growth and fat deposition traits. |
A physical map of large segments of pig chromosome 7q11-q14: comparative analysis with human chromosome 6p21. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |