LOC689757 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC689757
Entrez Gene ID	689757
Full Name	similar to osteoclast inhibitory lectin
Synonyms	Clec2d3,RGD1563033
General protein information	Preferred Names similar to osteoclast inhibitory lectin Names C-type lectin domain family 2 member D3
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 4 Map Location: 4q42

mRNA and Protein(s)

mRNA	Protein	Name
XM_008763332.2	XP_008761554.1	C-type lectin domain family 2 member D3 isoform X1
NM_001101019.2	NP_001094489.2	C-type lectin domain family 2 member D3

Pathways from BioSystems

Homologies

Rattus norvegicus (Norway rat)	Clec2d2	NP_001078871.1
Rattus norvegicus (Norway rat)	LOC500331	NP_001019508.1
Rattus norvegicus (Norway rat)	LOC689757	NP_001094489.2
Rattus norvegicus (Norway rat)	Clec2d	NP_569086.1
Rattus norvegicus (Norway rat)	LOC100910725	XP_006237500.1
Rattus norvegicus (Norway rat)	Clec2dl1	NP_001078873.1
Rattus norvegicus (Norway rat)	LOC689770	NP_001135776.1

Gene Ontology
Bibliography

Related articles in PubMed

Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding.
Kveberg L, Dai KZ, Westgaard IH, Daws MR, Fossum S, Naper C, Vaage JT
European journal of immunology39(2)541-51(2009 Feb)

Cytomegalovirus evasion of innate immunity by subversion of the NKR-P1B:Clr-b missing-self axis.
Voigt S, Mesci A, Ettinger J, Fine JH, Chen P, Chou W, Carlyle JR
Immunity26(5)617-27(2007 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC689757 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC689757 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa00542	NM_001101019.2 Latest version!	Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$139.30 $199.00
ORa50388	XM_008763332.2 Latest version!	Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$139.30 $199.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC689757 ( NM_001101019.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001094489.2 Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), mRNA.

Price & Availability↑

CloneID	ORa00542
Clone ID Related Accession (Same CDS sequence)	NM_001101019.2
Accession Version	NM_001101019.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 789bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-22
Organism	Rattus norvegicus(Norway rat)
Product	C-type lectin domain family 2 member D3
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FJ404472.1. On Jul 20, 2012 this sequence version replaced NM_001101019.1. ##Evidence-Data-START## Transcript exon combination :: FJ404472.1, EF100687.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMEA2689594 [ECO:0000350] ##Evidence-Data-END##

ATGTCTCCCT TGAATCCTAG GCCATACTCA ATGTCGTCCA GTGCACACCT ACAGGATGCT 
CCCCCACTCC TCTCCGGGAC CCTTACACAG AATGAAGGAC AGACCTCCTT GAGGCAGAGT 
AGCAGCTGTG GTCCGTCTGC TGCCTCTGCC TCTGAGTCAT TGTCAGGTTA CACCGAGTCA 
AGAATTCCTC ACAGTAAAGT GCGCCAAGGA AAGGGTCTCA GAAGCATCTT CCCTGAGTCT 
CGTGTTAAGC GTTACTGCTG CTATGGAGGA GTGATCACAG TCGTTGCTAT AGCTATAGTT 
GTTCCTCTTT CTGTTACTTT GTCAGTAAAA CAGATGGAAC AAACCTCAAT CAATAATACC 
TTCGCTGCCT CAATCAATAA TACCTCCGCT GCCTCAATCA ATAATACCTC TGCTGCTTGC 
CCGAGCAACT GGACTGAATA TGGTAATAAA TGTTTTTATT TTTCTGAATA TACAAGTAAC 
TGGACATTCA GCAAGGACTT CTGCGCGGCA CAAGGGGCCG AGCTAGCACG ATTTGACACC 
GAGGAGGAGC TGAATTTCCT AAAGAGATAC AAAGGGAGTT CGGGTTACTG GATCGGTCTG 
CACAGAGAGT CATCAGAGCA CCCTTGGAAG TGGACAGACA ATACTCAGTA TAACAACTTG 
GTTCCCATCC GAGGAGATGG ACAATGTGGC TTCCTGAGTG ACCAGCTCAA CATCAGCAGT 
AGCAGGGTCT ATGTAGAAAG GCCTTGGATT TGTAGCAAGC CCAAAAAATA CATCTCACAG 
TCCCAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001094489.2
CDS	1..789
Translation	MSPLNPRPYSMSSSAHLQDAPPLLSGTLTQNEGQTSLRQSSSCGPSAASASESLSGYTESRIPHSKVRQGKGLRSIFPESRVKRYCCYGGVITVVAIAIVVPLSVTLSVKQMEQTSINNTFAASINNTSAASINNTSAACPSNWTEYGNKCFYFSEYTSNWTFSKDFCAAQGAELARFDTEEELNFLKRYKGSSGYWIGLHRESSEHPWKWTDNTQYNNLVPIRGDGQCGFLSDQLNISSSRVYVERPWICSKPKKYISQSQ

Target ORF information:

RefSeq Version	NM_001101019.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001101019.2

ORF Insert Sequence:

ATGTCTCCCT TGAATCCTAG GCCATACTCA ATGTCGTCCA GTGCACACCT ACAGGATGCT 
CCCCCACTCC TCTCCGGGAC CCTTACACAG AATGAAGGAC AGACCTCCTT GAGGCAGAGT 
AGCAGCTGTG GTCCGTCTGC TGCCTCTGCC TCTGAGTCAT TGTCAGGTTA CACCGAGTCA 
AGAATTCCTC ACAGTAAAGT GCGCCAAGGA AAGGGTCTCA GAAGCATCTT CCCTGAGTCT 
CGTGTTAAGC GTTACTGCTG CTATGGAGGA GTGATCACAG TCGTTGCTAT AGCTATAGTT 
GTTCCTCTTT CTGTTACTTT GTCAGTAAAA CAGATGGAAC AAACCTCAAT CAATAATACC 
TTCGCTGCCT CAATCAATAA TACCTCCGCT GCCTCAATCA ATAATACCTC TGCTGCTTGC 
CCGAGCAACT GGACTGAATA TGGTAATAAA TGTTTTTATT TTTCTGAATA TACAAGTAAC 
TGGACATTCA GCAAGGACTT CTGCGCGGCA CAAGGGGCCG AGCTAGCACG ATTTGACACC 
GAGGAGGAGC TGAATTTCCT AAAGAGATAC AAAGGGAGTT CGGGTTACTG GATCGGTCTG 
CACAGAGAGT CATCAGAGCA CCCTTGGAAG TGGACAGACA ATACTCAGTA TAACAACTTG 
GTTCCCATCC GAGGAGATGG ACAATGTGGC TTCCTGAGTG ACCAGCTCAA CATCAGCAGT 
AGCAGGGTCT ATGTAGAAAG GCCTTGGATT TGTAGCAAGC CCAAAAAATA CATCTCACAG 
TCCCAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC689757 ( XM_008763332.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_008761554.1 Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa50388
Clone ID Related Accession (Same CDS sequence)	XM_008763332.2
Accession Version	XM_008763332.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 759bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	C-type lectin domain family 2 member D3 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005103.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008763332.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCGTCCA GTGCACACCT ACAGGATCCT CCCCCACACC TCTCCGGGAC CCTTACACAG 
GATGAAGGAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCCGTCTGC TGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC CACAGAGTCA AGAATTCCTC ACAGTAAAGT GCGCCAAGGA 
AAGGGTCTCA GAAGCATCTT CCCTGAGTCT CGTGTTAAGC GTTACTGCTG CTATGGAGGA 
GTGATCACAG TCGTTGCTAT AGCTATAGTT GTTCCTCTTT CTGTTACTTT GTCAGTAAAA 
CAGATGGAAC AAACCTCAAT CAATAATACC TTCGCTGCCT CAATCAATAA TACCTCCGCT 
GCCTCAATCA ATAATACCTC TGCTGCTTGC CCGAGCAACT GGACTGAATA TGGTAATAAA 
TGTTTTTATT TTTCTGAATA TACAAGTAAC TGGACATTCA GCAAGGACTT CTGCGCGGCA 
CAAGGGGCCG AGCTAGCACG ATTTGACACC GAGGAGGAGC TGAATTTCCT AAAGAGATAC 
AAAGGGAGTT CGGGTTACTG GATCGGTCTG CACAGAGAGT CATCAGAGCA CCCTTGGAAG 
TGGACAGACA ATACTCAGTA TAACAACTTG GTTCCCATCC GAGGAGATGG ACAATGTGGC 
TTCCTGAGTG ACCAGCTCAA CATCAGCAGT AGCAGGGTCT ATGTAGAAAG GCCTTGGATT 
TGTAGCAAGC CCAAAAAATA CATCTCACAG TCCCAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_008761554.1
CDS	360..1118
Translation	MPSSAHLQDPPPHLSGTLTQDEGQTSLRQSSSCGPSAASASESLSGSTESRIPHSKVRQGKGLRSIFPESRVKRYCCYGGVITVVAIAIVVPLSVTLSVKQMEQTSINNTFAASINNTSAASINNTSAACPSNWTEYGNKCFYFSEYTSNWTFSKDFCAAQGAELARFDTEEELNFLKRYKGSSGYWIGLHRESSEHPWKWTDNTQYNNLVPIRGDGQCGFLSDQLNISSSRVYVERPWICSKPKKYISQSQ

Target ORF information:

RefSeq Version	XM_008763332.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus similar to osteoclast inhibitory lectin (LOC689757), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_008763332.2

ORF Insert Sequence:

ATGCCGTCCA GTGCACACCT ACAGGATCCT CCCCCACACC TCTCCGGGAC CCTTACACAG 
GATGAAGGAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCCGTCTGC TGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC CACAGAGTCA AGAATTCCTC ACAGTAAAGT GCGCCAAGGA 
AAGGGTCTCA GAAGCATCTT CCCTGAGTCT CGTGTTAAGC GTTACTGCTG CTATGGAGGA 
GTGATCACAG TCGTTGCTAT AGCTATAGTT GTTCCTCTTT CTGTTACTTT GTCAGTAAAA 
CAGATGGAAC AAACCTCAAT CAATAATACC TTCGCTGCCT CAATCAATAA TACCTCCGCT 
GCCTCAATCA ATAATACCTC TGCTGCTTGC CCGAGCAACT GGACTGAATA TGGTAATAAA 
TGTTTTTATT TTTCTGAATA TACAAGTAAC TGGACATTCA GCAAGGACTT CTGCGCGGCA 
CAAGGGGCCG AGCTAGCACG ATTTGACACC GAGGAGGAGC TGAATTTCCT AAAGAGATAC 
AAAGGGAGTT CGGGTTACTG GATCGGTCTG CACAGAGAGT CATCAGAGCA CCCTTGGAAG 
TGGACAGACA ATACTCAGTA TAACAACTTG GTTCCCATCC GAGGAGATGG ACAATGTGGC 
TTCCTGAGTG ACCAGCTCAA CATCAGCAGT AGCAGGGTCT ATGTAGAAAG GCCTTGGATT 
TGTAGCAAGC CCAAAAAATA CATCTCACAG TCCCAGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding.
European journal of immunology39(2)541-51(2009 Feb)
Kveberg L,Dai KZ,Westgaard IH,Daws MR,Fossum S,Naper C,Vaage JT

Cytomegalovirus evasion of innate immunity by subversion of the NKR-P1B:Clr-b missing-self axis.
Immunity26(5)617-27(2007 May)
Voigt S,Mesci A,Ettinger J,Fine JH,Chen P,Chou W,Carlyle JR