Traf1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Traf1
Entrez Gene ID	687813
Full Name	TNF receptor-associated factor 1
General protein information	Preferred Names TNF receptor-associated factor 1 Names TNF receptor-associated factor 1
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 3 Map Location: 3p11

mRNA and Protein(s)

mRNA	Protein	Name
NM_001271240.1	NP_001258169.1	TNF receptor-associated factor 1
XM_006233999.3	XP_006234061.1	TNF receptor-associated factor 1 isoform X2
XM_017592041.1	XP_017447530.1	TNF receptor-associated factor 1 isoform X1

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	TRAF1	XP_004946050.1
Homo sapiens (human)	TRAF1	NP_001177874.1
Danio rerio (zebrafish)	traf1	NP_001121853.1
Pan troglodytes (chimpanzee)	TRAF1	XP_001158357.1
Bos taurus (cattle)	TRAF1	NP_001179730.1
Mus musculus (house mouse)	Traf1	NP_033447.2
	TRAF1	XP_001095862.1
Canis lupus familiaris (dog)	TRAF1	XP_855528.1
Rattus norvegicus (Norway rat)	Traf1	NP_001258169.1

Gene Ontology
Bibliography

Related articles in PubMed

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, Yi S, Tyagi T, Sheykhkarimli D, Roth JF, Wong C, Musa L, Snider J, Liu YC, Yu H, Braun P, Stagljar I, Hao T, Calderwood MA, Pelletier L, Aloy P, Hill DE, Vidal M, Roth FP
Molecular systems biology12(4)863(2016 Apr)

A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.
Bouwmeester T, Bauch A, Ruffner H, Angrand PO, Bergamini G, Croughton K, Cruciat C, Eberhard D, Gagneur J, Ghidelli S, Hopf C, Huhse B, Mangano R, Michon AM, Schirle M, Schlegl J, Schwab M, Stein MA, Bauer A, Casari G, Drewes G, Gavin AC, Jackson DB, Joberty G, Neubauer G, Rick J, Kuster B, Superti-Furga G
Nature cell biology6(2)97-105(2004 Feb)

A novel TNF receptor family member binds TWEAK and is implicated in angiogenesis.
Wiley SR, Cassiano L, Lofton T, Davis-Smith T, Winkles JA, Lindner V, Liu H, Daniel TO, Smith CA, Fanslow WC
Immunity15(5)837-46(2001 Nov)

A diverse family of proteins containing tumor necrosis factor receptor-associated factor domains.
Zapata JM, Pawlowski K, Haas E, Ware CF, Godzik A, Reed JC
The Journal of biological chemistry276(26)24242-52(2001 Jun)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Traf1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Traf1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ORa10713	NM_001271240.1 Latest version!	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$223.30 $319.00
ORa10713	XM_017592041.1 Latest version!	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$223.30 $319.00
ORa10713	XM_006233999.3 Latest version!	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$223.30 $319.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Traf1 ( NM_001271240.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001258169.1 Rattus norvegicus TNF receptor-associated factor 1 (Traf1), mRNA.

Price & Availability↑

CloneID	ORa10713
Clone ID Related Accession (Same CDS sequence)	NM_001271240.1 , XM_006233999.3 , XM_017592041.1
Accession Version	NM_001271240.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1230bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-06-08
Organism	Rattus norvegicus(Norway rat)
Product	TNF receptor-associated factor 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AABR07051489.1 and AABR07051488.1. On Sep 8, 2012 this sequence version replaced XM_003749450.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2689594, SAMEA2689599 [ECO:0000348] ##Evidence-Data-END##

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001258169.1
CDS	75..1304
Translation	MASSSAPDENEFQFGCPPAPSQDPSEPRALCCTACLSENLRDDEERICPKCRADGLQPVSPGSLLTQEKVLPDVAEAGIVCPFAGVGCSFKGSPQSVQEHEATSQSSHLYLLLGVLKEWKSSPGPNLGSAPMALEQNLSELQLQEAVEVTGDLEVDCYRAPCCESQEELALQHLLKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHVLNLEQRVVELQQTLAQKDQVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTSA

Target ORF information:

RefSeq Version	NM_001271240.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001271240.1

ORF Insert Sequence:

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Traf1 ( XM_006233999.3 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006234061.1 Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ORa10713
Clone ID Related Accession (Same CDS sequence)	NM_001271240.1 , XM_006233999.3 , XM_017592041.1
Accession Version	XM_006233999.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1230bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	TNF receptor-associated factor 1 isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006233999.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006234061.1
CDS	502..1731
Translation	MASSSAPDENEFQFGCPPAPSQDPSEPRALCCTACLSENLRDDEERICPKCRADGLQPVSPGSLLTQEKVLPDVAEAGIVCPFAGVGCSFKGSPQSVQEHEATSQSSHLYLLLGVLKEWKSSPGPNLGSAPMALEQNLSELQLQEAVEVTGDLEVDCYRAPCCESQEELALQHLLKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHVLNLEQRVVELQQTLAQKDQVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTSA

Target ORF information:

RefSeq Version	XM_006233999.3
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006233999.3

ORF Insert Sequence:

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Traf1 ( XM_017592041.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_017447530.1 Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa10713
Clone ID Related Accession (Same CDS sequence)	NM_001271240.1 , XM_006233999.3 , XM_017592041.1
Accession Version	XM_017592041.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1230bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	TNF receptor-associated factor 1 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017447530.1
CDS	502..1731
Translation	MASSSAPDENEFQFGCPPAPSQDPSEPRALCCTACLSENLRDDEERICPKCRADGLQPVSPGSLLTQEKVLPDVAEAGIVCPFAGVGCSFKGSPQSVQEHEATSQSSHLYLLLGVLKEWKSSPGPNLGSAPMALEQNLSELQLQEAVEVTGDLEVDCYRAPCCESQEELALQHLLKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHVLNLEQRVVELQQTLAQKDQVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTSA

Target ORF information:

RefSeq Version	XM_017592041.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus TNF receptor-associated factor 1 (Traf1), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017592041.1

ORF Insert Sequence:

ATGGCCTCCA GCTCAGCCCC TGATGAAAAC GAGTTTCAAT TTGGTTGTCC CCCTGCTCCC 
AGCCAGGACC CATCGGAGCC CAGAGCTCTC TGCTGCACAG CCTGTCTCTC TGAGAACCTG 
AGAGACGATG AGGAACGGAT CTGTCCTAAA TGCAGAGCAG ACGGCCTCCA ACCTGTGAGC 
CCAGGAAGCC TTCTGACTCA GGAGAAGGTT CTCCCTGATG TGGCTGAGGC TGGAATCGTG 
TGTCCCTTTG CAGGTGTTGG CTGTTCCTTC AAGGGGAGCC CACAGTCCGT GCAGGAGCAT 
GAGGCCACCT CGCAGTCCTC ACACCTGTAC CTGCTTCTGG GGGTCCTAAA GGAGTGGAAA 
TCCTCACCAG GTCCCAACCT GGGCTCTGCA CCCATGGCAC TGGAGCAGAA CCTGTCGGAG 
CTGCAGCTTC AGGAAGCTGT GGAAGTGACA GGGGACCTGG AGGTAGACTG CTACCGGGCA 
CCTTGCTGTG AGAGCCAGGA AGAACTGGCT TTGCAGCACC TCCTGAAGGA GAAGCTGCTG 
GCTCAGCTGG AGGAGAAGCT GCGTGTGTTC GCGAACATAG TTGCTGTCCT CAACAAGGAA 
GTGGAGGCTT CCCACCTGGC GCTGGCCGCC TCCATCCACC AGAGTCAGTT GGACCGAGAG 
CACGTCCTGA ACTTGGAGCA GAGGGTGGTG GAGTTACAGC AGACCCTGGC TCAAAAAGAC 
CAGGTTCTGG GCAAACTTGA GCACAGTCTG CGACTCATGG AGGAGGCGTC CTTTGATGGT 
ACTTTCCTGT GGAAGATCAC CAATGTCACC AAGCGGTGCC ACGAATCAGT GTGTGGCAGG 
ACTGTCAGCC TCTTCTCTCC AGCTTTCTAC ACTGCCAAGT ACGGTTACAA GTTGTGCCTG 
CGCCTGTACC TGAATGGGGA TGGCTCAGGC AAGAAGACCC ACCTGTCCCT GTTCATTGTC 
ATCATGAGGG GAGAATATGA CGCTCTGCTG CCCTGGCCTT TCCGGAACAA GGTCACCTTT 
ATGCTACTTG ACCAGAACAA CCGTGAGCAC GCCATTGATG CCTTCCGGCC TGACCTGAGC 
TCAGCCTCCT TCCAGCGGCC GCAGAGTGAG ACCAACGTGG CCAGCGGCTG CCCGCTCTTC 
TTCCCCCTCA GCAAGCTGCA GTCGCCCAAG CACGCCTACG TAAAAGATGA TACAATGTTC 
CTCAAATGCA TTGTGGACAC CAGTGCTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
Molecular systems biology12(4)863(2016 Apr)
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Traf1 cDNA ORF clone, Rattus norvegicus(Norway rat)

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