Pcdha2 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha2
Entrez Gene ID	393086
Full Name	protocadherin alpha 2
Synonyms	rCNRv02
General protein information	Preferred Names protocadherin alpha 2 Names protocadherin alpha-2 cadherin-related neuronal receptor 2
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	member of a family of synaptic cadherins and Reelin receptors [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199504.1	NP_955798.1	protocadherin alpha-2 precursor

Pathways from BioSystems

Homologies

	LOC698874	XP_002804600.1
Gallus gallus (chicken)	PCDHA7	NP_001104607.1
Gallus gallus (chicken)	PCDHA9	NP_001104609.1
Gallus gallus (chicken)	PCDHA3	NP_001104603.1
Homo sapiens (human)	PCDHA2	NP_061728.1
Pan troglodytes (chimpanzee)	PCDHA2	NP_001076052.1
Mus musculus (house mouse)	Pcdha2	NP_932785.1
Gallus gallus (chicken)	PCDHA11	NP_001104598.1
Gallus gallus (chicken)	PCDHA4	NP_001104604.1
Gallus gallus (chicken)	PCDHA12	NP_001104599.1
Rattus norvegicus (Norway rat)	Pcdha2	NP_955798.1
Gallus gallus (chicken)	PCDHA2	NP_001104602.1
Gallus gallus (chicken)	PCDHA6	NP_001104606.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05400	NM_199504.1 Latest version!	Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha2 ( NM_199504.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955798.1 Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA.

Price & Availability↑

CloneID	ORa05400
Clone ID Related Accession (Same CDS sequence)	NM_199504.1
Accession Version	NM_199504.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2847bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-30
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-2 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113385.1. ##Evidence-Data-START## Transcript exon combination :: AB113385.1, AY573976.1 [ECO:0000332] ##Evidence-Data-END##

ATGCCTTCTT TGAGAGGGGG TCCAGAGGTC AGGCAGTGTC TGCTGCTCTT GCTTCCTTTC 
CTCGCAGCCT GGGAGGCAGG GAGCGGCCAG CTTCATTACT CCGTTACAGA AGAGGCCAAA 
CACGGTACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGC GGAGCTGGTG 
CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCAGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCTCTATTTC CAATGACAGA AAAAATTATC 
CAGTTTTTCG AATCTAGGGT GCTTCACTCG CGGTTTCCTT TAGAGGGAGC ATCTGATGCA 
GATATAGGAG CAAATGCTCT TCTGTCCTAC AAGCTCAGCC CCAGCGAGTT TTTCTTTCTA 
GATGTACAAA CGAGTGATGA ACTAAGCCAA TCTCTGTTTC TTGTGCTGGG GAAATCTCTG 
GATAGAGAGG AGAATGCGGA GGTGAAATTG TTACTGGTAG CTACCGACGG AGGCAAGCCT 
GAACTCACGG GCACTGTTCA AATACTCATT AAGGTGTTAG ATGTGAATGA CAACGAACCT 
ACTTTCCCCC AGTCAGTTTA CAAAGTGCCG CTGTTAGAGA ACACTGCAAA CGGAACCCTG 
GTGATTAAAT TAAACGCTTC TGATGCAGAT GAAGGAGCGA ACAGTGAGAT TGTGTATTCA 
CTCAGTAGTG ATGTGTCTTC TACCACACGG ACAAAGTTTC AAATAGACGC AAACTCAGGA 
GAAATCAGAA CTACGGGAGA ATTAGATTAT GAAGAAAAGA CATCGTATGA AATCCAGATC 
ATTGCATCTG ACAAAGGAAC CCCGTCAATG TCAGGGCATT GTAAAATTTC AGTAAAACTT 
ATGGATATCA ATGACAACAC GCCGGAAGTT TCAATAACGT CTCTTTCACT ACCTGTCCAA 
GAGAATGCTC CACTGGGTGC TGTCATCGCC CTCATCTCAG TCTCAGATCG TGACTCAGGA 
ATCAATGGGC AGGTGACCTG CTCCCTAAGT CCTCACCTCC CCTTCAAGCT GGTGTCCACT 
TTCAAGAACT ACTATTCGCT CGTGCTGGAC AGCGCTTTGG ACCGGGAAAC CACAGCTGAG 
TATAAGGTAA TGGTGACAGC CCGGGACGGG GGCTCACCTT CGCTGCAGGC CACAGCTACC 
ATTTCTGTGG AGGTGGCTGA CGTGAACGAT AATGCGCCTC TGTTCGCGCA GCCTGAATAC 
ACGGTGTTCG TGAAGGAGAA CAATCCACCC GGCGCACACA TCTTTACAGT GTCGGCGGTG 
GATGCAGATG CACAGGAGAA CGCGTTGGTG TTTTACTCGT TGGTGGAGCG GAGGATGGGT 
GAACGCTTGC TGTCGAGCTA TGTGTCTGTG CACGCGGAGA GCGGCAAGGT GTTCGCGCTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGCACCCA TGCTGCTGCC TCACGGAGCT GTGGGAGTTG GCGGCTCAGT TAGTGAGCTT 
GTGCCTAGGT CAGTAGGTTC AGGTCATGTG GTCACCAAGG TGCATGCAGT GGATGCAGAC 
TCTGGTTACA ATGCGTGGCT GTCATATGAA CTGCAACCCA CAGTTGGCAC ACGTATCCCG 
TTCCGCGTGG GTCTGTATAC GGGTGAAATC AGCACCACGC GCGCCTTAGA TGAAGTGGAT 
GCGCTGCGCC ATCGCCTACT AGTGTTGGTG AAGGACCATG GTGAGCCTGC GCTAACTGCC 
ACAGCCACAG TGTTACTTTC TCTAGTTGAG AATGGGCAAG CTCCAAAAAC TTCATCAAGA 
GCGTTGGTAG ATGCCGCTGG CCAAGAGACA TCTCTGGTGA CTGTTAATGT GTATCTGATC 
ATCGCCATCT GCGCAGTGTC CAGCCTGTTA GTGCTCACCC TGTTGCTGTA CACCGCGCTG 
CGCTGCTCGG CGATGCCCAC CAATGGAGCC TGTGCTCCAG GGAAGCCCAT GCTGGTGTGC 
TCCAGCGCGG TGGGAAGCTG GTCGTACTCG CAGCAGAGGC GACAGAGGGT GTGCTCTGGA 
GAGGGCCTAC CTAAGACTGA TCTCATGGCC TTCAGTCCCA GTCTATCCCA AGGTCCAGAA 
TCGGCAGAAG AGAGACAACC ACCCTTAGAG GCCGAACACT TAGGAAAGCC CCGACAGCCC 
AACCCTGACT GGCGCTACTC TGCCTCGCTA AGAGCCGGCA TGCACAGCTC TGTGCACCTG 
GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAACAGTG GCCAACAGTA 
TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAGGTGTCCC CTCCAGTGGG CGCTGGTGTC 
AACAGCAACA GCTGGACCTT TAAATACGGA CCCGGCAACC CCAAACAGCC CGGTCCCGGT 
GAGTTGCCAG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG 
TCTGCTAACA ACCAAATTGA CAAAAGCGAT TTTATAACCT TCGGCAAAAA GGAGGAGACC 
AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC 
AGCACGACGG ACAACAGTGA CCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955798.1
CDS	1..2847
Translation	MPSLRGGPEVRQCLLLLLPFLAAWEAGSGQLHYSVTEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPLFPMTEKIIQFFESRVLHSRFPLEGASDADIGANALLSYKLSPSEFFFLDVQTSDELSQSLFLVLGKSLDREENAEVKLLLVATDGGKPELTGTVQILIKVLDVNDNEPTFPQSVYKVPLLENTANGTLVIKLNASDADEGANSEIVYSLSSDVSSTTRTKFQIDANSGEIRTTGELDYEEKTSYEIQIIASDKGTPSMSGHCKISVKLMDINDNTPEVSITSLSLPVQENAPLGAVIALISVSDRDSGINGQVTCSLSPHLPFKLVSTFKNYYSLVLDSALDRETTAEYKVMVTARDGGSPSLQATATISVEVADVNDNAPLFAQPEYTVFVKENNPPGAHIFTVSAVDADAQENALVFYSLVERRMGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPMLLPHGAVGVGGSVSELVPRSVGSGHVVTKVHAVDADSGYNAWLSYELQPTVGTRIPFRVGLYTGEISTTRALDEVDALRHRLLVLVKDHGEPALTATATVLLSLVENGQAPKTSSRALVDAAGQETSLVTVNVYLIIAICAVSSLLVLTLLLYTALRCSAMPTNGACAPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGLPKTDLMAFSPSLSQGPESAEERQPPLEAEHLGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199504.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 2 (Pcdha2), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199504.1

ORF Insert Sequence:

ATGCCTTCTT TGAGAGGGGG TCCAGAGGTC AGGCAGTGTC TGCTGCTCTT GCTTCCTTTC 
CTCGCAGCCT GGGAGGCAGG GAGCGGCCAG CTTCATTACT CCGTTACAGA AGAGGCCAAA 
CACGGTACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGC GGAGCTGGTG 
CCCCGCCTGT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCAGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA GGGACATTAA CGACAACCCG CCTCTATTTC CAATGACAGA AAAAATTATC 
CAGTTTTTCG AATCTAGGGT GCTTCACTCG CGGTTTCCTT TAGAGGGAGC ATCTGATGCA 
GATATAGGAG CAAATGCTCT TCTGTCCTAC AAGCTCAGCC CCAGCGAGTT TTTCTTTCTA 
GATGTACAAA CGAGTGATGA ACTAAGCCAA TCTCTGTTTC TTGTGCTGGG GAAATCTCTG 
GATAGAGAGG AGAATGCGGA GGTGAAATTG TTACTGGTAG CTACCGACGG AGGCAAGCCT 
GAACTCACGG GCACTGTTCA AATACTCATT AAGGTGTTAG ATGTGAATGA CAACGAACCT 
ACTTTCCCCC AGTCAGTTTA CAAAGTGCCG CTGTTAGAGA ACACTGCAAA CGGAACCCTG 
GTGATTAAAT TAAACGCTTC TGATGCAGAT GAAGGAGCGA ACAGTGAGAT TGTGTATTCA 
CTCAGTAGTG ATGTGTCTTC TACCACACGG ACAAAGTTTC AAATAGACGC AAACTCAGGA 
GAAATCAGAA CTACGGGAGA ATTAGATTAT GAAGAAAAGA CATCGTATGA AATCCAGATC 
ATTGCATCTG ACAAAGGAAC CCCGTCAATG TCAGGGCATT GTAAAATTTC AGTAAAACTT 
ATGGATATCA ATGACAACAC GCCGGAAGTT TCAATAACGT CTCTTTCACT ACCTGTCCAA 
GAGAATGCTC CACTGGGTGC TGTCATCGCC CTCATCTCAG TCTCAGATCG TGACTCAGGA 
ATCAATGGGC AGGTGACCTG CTCCCTAAGT CCTCACCTCC CCTTCAAGCT GGTGTCCACT 
TTCAAGAACT ACTATTCGCT CGTGCTGGAC AGCGCTTTGG ACCGGGAAAC CACAGCTGAG 
TATAAGGTAA TGGTGACAGC CCGGGACGGG GGCTCACCTT CGCTGCAGGC CACAGCTACC 
ATTTCTGTGG AGGTGGCTGA CGTGAACGAT AATGCGCCTC TGTTCGCGCA GCCTGAATAC 
ACGGTGTTCG TGAAGGAGAA CAATCCACCC GGCGCACACA TCTTTACAGT GTCGGCGGTG 
GATGCAGATG CACAGGAGAA CGCGTTGGTG TTTTACTCGT TGGTGGAGCG GAGGATGGGT 
GAACGCTTGC TGTCGAGCTA TGTGTCTGTG CACGCGGAGA GCGGCAAGGT GTTCGCGCTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGCACCCA TGCTGCTGCC TCACGGAGCT GTGGGAGTTG GCGGCTCAGT TAGTGAGCTT 
GTGCCTAGGT CAGTAGGTTC AGGTCATGTG GTCACCAAGG TGCATGCAGT GGATGCAGAC 
TCTGGTTACA ATGCGTGGCT GTCATATGAA CTGCAACCCA CAGTTGGCAC ACGTATCCCG 
TTCCGCGTGG GTCTGTATAC GGGTGAAATC AGCACCACGC GCGCCTTAGA TGAAGTGGAT 
GCGCTGCGCC ATCGCCTACT AGTGTTGGTG AAGGACCATG GTGAGCCTGC GCTAACTGCC 
ACAGCCACAG TGTTACTTTC TCTAGTTGAG AATGGGCAAG CTCCAAAAAC TTCATCAAGA 
GCGTTGGTAG ATGCCGCTGG CCAAGAGACA TCTCTGGTGA CTGTTAATGT GTATCTGATC 
ATCGCCATCT GCGCAGTGTC CAGCCTGTTA GTGCTCACCC TGTTGCTGTA CACCGCGCTG 
CGCTGCTCGG CGATGCCCAC CAATGGAGCC TGTGCTCCAG GGAAGCCCAT GCTGGTGTGC 
TCCAGCGCGG TGGGAAGCTG GTCGTACTCG CAGCAGAGGC GACAGAGGGT GTGCTCTGGA 
GAGGGCCTAC CTAAGACTGA TCTCATGGCC TTCAGTCCCA GTCTATCCCA AGGTCCAGAA 
TCGGCAGAAG AGAGACAACC ACCCTTAGAG GCCGAACACT TAGGAAAGCC CCGACAGCCC 
AACCCTGACT GGCGCTACTC TGCCTCGCTA AGAGCCGGCA TGCACAGCTC TGTGCACCTG 
GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAACAGTG GCCAACAGTA 
TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAGGTGTCCC CTCCAGTGGG CGCTGGTGTC 
AACAGCAACA GCTGGACCTT TAAATACGGA CCCGGCAACC CCAAACAGCC CGGTCCCGGT 
GAGTTGCCAG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG 
TCTGCTAACA ACCAAATTGA CAAAAGCGAT TTTATAACCT TCGGCAAAAA GGAGGAGACC 
AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC 
AGCACGACGG ACAACAGTGA CCAGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
The Journal of biological chemistry279(47)49508-16(2004 Nov)
Murata Y,Hamada S,Morishita H,Mutoh T,Yagi T

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

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Pcdha2 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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