Clec2d2 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Clec2d2
Entrez Gene ID	362445
Full Name	C-type lectin domain family 2 member D2
Synonyms	Clr2,RGD1562831
General protein information	Preferred Names C-type lectin domain family 2 member D2 Names C-type lectin domain family 2 member D2 C-type lectin-related protein 2
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 4 Map Location: 4q42

mRNA and Protein(s)

mRNA	Protein	Name
XM_017592708.1	XP_017448197.1	C-type lectin domain family 2 member D2 isoform X1
NM_001085402.1	NP_001078871.1	C-type lectin domain family 2 member D2

Pathways from BioSystems

Homologies

Rattus norvegicus (Norway rat)	Clec2d2	NP_001078871.1
Rattus norvegicus (Norway rat)	LOC500331	NP_001019508.1
Rattus norvegicus (Norway rat)	LOC689757	NP_001094489.2
Rattus norvegicus (Norway rat)	Clec2d	NP_569086.1
Rattus norvegicus (Norway rat)	LOC100910725	XP_006237500.1
Rattus norvegicus (Norway rat)	Clec2dl1	NP_001078873.1
Rattus norvegicus (Norway rat)	LOC689770	NP_001135776.1

Gene Ontology
Bibliography

Related articles in PubMed

Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding.
Kveberg L, Dai KZ, Westgaard IH, Daws MR, Fossum S, Naper C, Vaage JT
European journal of immunology39(2)541-51(2009 Feb)

Cytomegalovirus evasion of innate immunity by subversion of the NKR-P1B:Clr-b missing-self axis.
Voigt S, Mesci A, Ettinger J, Fine JH, Chen P, Chou W, Carlyle JR
Immunity26(5)617-27(2007 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Clec2d2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Clec2d2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa10954	NM_001085402.1 Latest version!	Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$188.30 $269.00
ORa10954	XM_017592708.1 Latest version!	Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$188.30 $269.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Clec2d2 ( NM_001085402.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001078871.1 Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), mRNA.

Price & Availability↑

CloneID	ORa10954
Clone ID Related Accession (Same CDS sequence)	XM_017592708.1 , NM_001085402.1
Accession Version	NM_001085402.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 702bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-16
Organism	Rattus norvegicus(Norway rat)
Product	C-type lectin domain family 2 member D2
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF100686.1. On or before Apr 28, 2007 this sequence version replaced XM_342767.3, XM_001067087.1. ##Evidence-Data-START## Transcript exon combination :: EF100686.1, EU128746.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2689594, SAMEA2689599 [ECO:0000348] ##Evidence-Data-END##

ATGCCGTCCA GTGCACACCT ACAGGATGCT CCTCCACTCC TCTCCAGGAC CCTTACACAG 
GATGAAGAAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCTGTCTGC AGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC TACCAAGTCA AGAATTCCTC ACAGTAAAAT GCTCCAAGGA 
AATCTTCCCA GAATCATCTC CCCTGAGTCT CCTGCTAAGC TTCCCTGCTG CTATGGAGTG 
ATCATGGTCC TCAGTGTAGC TGTAGTAGCT CTTTCTGTTG CTTTGTCAGT AAAAAAGACA 
CCACAGATCT TAACCGTAAA AACCTACGCT GCTTGCCCGA GAAACTGGAT AGGAGTTGGA 
AATAAATGTT ATTATTTTAA TGAAACGCCA AGTAACTGGA CATTCAGCCA GACCCTCTGT 
AAGGCACAAG AGGCCGAGCT AGCACGATTT GACACCGAGG AGGAGCTGAA TTTCCTAAAG 
AGACACAAAG GGAGTTCGGG TTACTGGATC GGTCTGCACA GAGAGTCATC ATCACAGCCT 
TGGAAGTGGA CAGACAACAC TGCATATAAC AACTTGGTTC CCATCGGAGG AGATGAAAAA 
CATGGTTTCC TGAGTGACAA TGGGTTCAGC AGTGGCAGGG GTTACATAGT GAGGAAGTCG 
ATTTGTAGCA AGCCCAACAG CTACACCTCA CAGTGCCAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001078871.1
CDS	1..702
Translation	MPSSAHLQDAPPLLSRTLTQDEEQTSLRQSSSCGLSAASASESLSGSTKSRIPHSKMLQGNLPRIISPESPAKLPCCYGVIMVLSVAVVALSVALSVKKTPQILTVKTYAACPRNWIGVGNKCYYFNETPSNWTFSQTLCKAQEAELARFDTEEELNFLKRHKGSSGYWIGLHRESSSQPWKWTDNTAYNNLVPIGGDEKHGFLSDNGFSSGRGYIVRKSICSKPNSYTSQCQ

Target ORF information:

RefSeq Version	NM_001085402.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001085402.1

ORF Insert Sequence:

ATGCCGTCCA GTGCACACCT ACAGGATGCT CCTCCACTCC TCTCCAGGAC CCTTACACAG 
GATGAAGAAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCTGTCTGC AGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC TACCAAGTCA AGAATTCCTC ACAGTAAAAT GCTCCAAGGA 
AATCTTCCCA GAATCATCTC CCCTGAGTCT CCTGCTAAGC TTCCCTGCTG CTATGGAGTG 
ATCATGGTCC TCAGTGTAGC TGTAGTAGCT CTTTCTGTTG CTTTGTCAGT AAAAAAGACA 
CCACAGATCT TAACCGTAAA AACCTACGCT GCTTGCCCGA GAAACTGGAT AGGAGTTGGA 
AATAAATGTT ATTATTTTAA TGAAACGCCA AGTAACTGGA CATTCAGCCA GACCCTCTGT 
AAGGCACAAG AGGCCGAGCT AGCACGATTT GACACCGAGG AGGAGCTGAA TTTCCTAAAG 
AGACACAAAG GGAGTTCGGG TTACTGGATC GGTCTGCACA GAGAGTCATC ATCACAGCCT 
TGGAAGTGGA CAGACAACAC TGCATATAAC AACTTGGTTC CCATCGGAGG AGATGAAAAA 
CATGGTTTCC TGAGTGACAA TGGGTTCAGC AGTGGCAGGG GTTACATAGT GAGGAAGTCG 
ATTTGTAGCA AGCCCAACAG CTACACCTCA CAGTGCCAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Clec2d2 ( XM_017592708.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_017448197.1 Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa10954
Clone ID Related Accession (Same CDS sequence)	XM_017592708.1 , NM_001085402.1
Accession Version	XM_017592708.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 702bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	C-type lectin domain family 2 member D2 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005103.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCGTCCA GTGCACACCT ACAGGATGCT CCTCCACTCC TCTCCAGGAC CCTTACACAG 
GATGAAGAAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCTGTCTGC AGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC TACCAAGTCA AGAATTCCTC ACAGTAAAAT GCTCCAAGGA 
AATCTTCCCA GAATCATCTC CCCTGAGTCT CCTGCTAAGC TTCCCTGCTG CTATGGAGTG 
ATCATGGTCC TCAGTGTAGC TGTAGTAGCT CTTTCTGTTG CTTTGTCAGT AAAAAAGACA 
CCACAGATCT TAACCGTAAA AACCTACGCT GCTTGCCCGA GAAACTGGAT AGGAGTTGGA 
AATAAATGTT ATTATTTTAA TGAAACGCCA AGTAACTGGA CATTCAGCCA GACCCTCTGT 
AAGGCACAAG AGGCCGAGCT AGCACGATTT GACACCGAGG AGGAGCTGAA TTTCCTAAAG 
AGACACAAAG GGAGTTCGGG TTACTGGATC GGTCTGCACA GAGAGTCATC ATCACAGCCT 
TGGAAGTGGA CAGACAACAC TGCATATAAC AACTTGGTTC CCATCGGAGG AGATGAAAAA 
CATGGTTTCC TGAGTGACAA TGGGTTCAGC AGTGGCAGGG GTTACATAGT GAGGAAGTCG 
ATTTGTAGCA AGCCCAACAG CTACACCTCA CAGTGCCAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017448197.1
CDS	1455..2156
Translation	MPSSAHLQDAPPLLSRTLTQDEEQTSLRQSSSCGLSAASASESLSGSTKSRIPHSKMLQGNLPRIISPESPAKLPCCYGVIMVLSVAVVALSVALSVKKTPQILTVKTYAACPRNWIGVGNKCYYFNETPSNWTFSQTLCKAQEAELARFDTEEELNFLKRHKGSSGYWIGLHRESSSQPWKWTDNTAYNNLVPIGGDEKHGFLSDNGFSSGRGYIVRKSICSKPNSYTSQCQ

Target ORF information:

RefSeq Version	XM_017592708.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus C-type lectin domain family 2 member D2 (Clec2d2), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017592708.1

ORF Insert Sequence:

ATGCCGTCCA GTGCACACCT ACAGGATGCT CCTCCACTCC TCTCCAGGAC CCTTACACAG 
GATGAAGAAC AGACCTCCTT GAGGCAGAGT AGCAGCTGTG GTCTGTCTGC AGCCTCTGCC 
TCTGAGTCAT TGTCAGGTTC TACCAAGTCA AGAATTCCTC ACAGTAAAAT GCTCCAAGGA 
AATCTTCCCA GAATCATCTC CCCTGAGTCT CCTGCTAAGC TTCCCTGCTG CTATGGAGTG 
ATCATGGTCC TCAGTGTAGC TGTAGTAGCT CTTTCTGTTG CTTTGTCAGT AAAAAAGACA 
CCACAGATCT TAACCGTAAA AACCTACGCT GCTTGCCCGA GAAACTGGAT AGGAGTTGGA 
AATAAATGTT ATTATTTTAA TGAAACGCCA AGTAACTGGA CATTCAGCCA GACCCTCTGT 
AAGGCACAAG AGGCCGAGCT AGCACGATTT GACACCGAGG AGGAGCTGAA TTTCCTAAAG 
AGACACAAAG GGAGTTCGGG TTACTGGATC GGTCTGCACA GAGAGTCATC ATCACAGCCT 
TGGAAGTGGA CAGACAACAC TGCATATAAC AACTTGGTTC CCATCGGAGG AGATGAAAAA 
CATGGTTTCC TGAGTGACAA TGGGTTCAGC AGTGGCAGGG GTTACATAGT GAGGAAGTCG 
ATTTGTAGCA AGCCCAACAG CTACACCTCA CAGTGCCAGT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding.
European journal of immunology39(2)541-51(2009 Feb)
Kveberg L,Dai KZ,Westgaard IH,Daws MR,Fossum S,Naper C,Vaage JT

Cytomegalovirus evasion of innate immunity by subversion of the NKR-P1B:Clr-b missing-self axis.
Immunity26(5)617-27(2007 May)
Voigt S,Mesci A,Ettinger J,Fine JH,Chen P,Chou W,Carlyle JR