Csde1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Csde1
Entrez Gene ID	117180
Full Name	cold shock domain containing E1, RNA binding
Synonyms	Unr
General protein information	Preferred Names cold shock domain containing E1, RNA binding Names cold shock domain-containing protein E1 cold shock domain containing E1, RNA binding-like upstream of NRAS
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 2 Map Location: 2q34
Summary	gene of unknown function that may be coordinately regulated with N-ras [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_054006.1	NP_446458.1	cold shock domain-containing protein E1

Pathways from BioSystems

Homologies

Homo sapiens (human)	CSDE1	NP_001229820.1
Canis lupus familiaris (dog)	CSDE1	XP_533016.1
Bos taurus (cattle)	CSDE1	NP_001091494.1
Rattus norvegicus (Norway rat)	Csde1	NP_446458.1
Rattus norvegicus (Norway rat)	LOC100364335	XP_003751901.1
Gallus gallus (chicken)	CSDE1	NP_001026089.1
Danio rerio (zebrafish)	si:ch211-261n11.2	NP_001186365.1
Drosophila melanogaster (fruit fly)	Unr	NP_001137912.1
	CSDE1	XP_001111655.1
Danio rerio (zebrafish)	csde1	XP_005167014.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP004937	XP_315026.4
Pan troglodytes (chimpanzee)	CSDE1	XP_003949558.1
Mus musculus (house mouse)	Csde1	NP_659150.1
Xenopus tropicalis (tropical clawed frog)	csde1	NP_001025700.1

Gene Ontology
Bibliography

Related articles in PubMed

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)

In vitro evidence that upstream of N-ras participates in the regulation of parathyroid hormone messenger ribonucleic acid stability.
Dinur M, Kilav R, Sela-Brown A, Jacquemin-Sablon H, Naveh-Many T
Molecular endocrinology (Baltimore, Md.)20(7)1652-60(2006 Jul)

UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant.
Chang TC, Yamashita A, Chen CY, Yamashita Y, Zhu W, Durdan S, Kahvejian A, Sonenberg N, Shyu AB
Genes & development18(16)2010-23(2004 Aug)

Proteomic analysis of the mouse liver mitochondrial inner membrane.
Da Cruz S, Xenarios I, Langridge J, Vilbois F, Parone PA, Martinou JC
The Journal of biological chemistry278(42)41566-71(2003 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Unr, together with the other proteins in the RNA binding complex, determines PTH mRNA stability.
Title: In vitro evidence that upstream of N-ras participates in the regulation of parathyroid hormone messenger ribonucleic acid stability.

The following Csde1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Csde1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa11315	NM_054006.1 Latest version!	Rattus norvegicus cold shock domain containing E1 (Csde1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$468.30 $669.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Csde1 ( NM_054006.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446458.1 Rattus norvegicus cold shock domain containing E1 (Csde1), mRNA.

Price & Availability↑

CloneID	ORa11315
Clone ID Related Accession (Same CDS sequence)	NM_054006.1
Accession Version	NM_054006.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2397bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-15
Organism	Rattus norvegicus(Norway rat)
Product	cold shock domain-containing protein E1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from X52311.1. ##Evidence-Data-START## Transcript exon combination :: X52311.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END##

ATGAGCTTTG ATCCAAACCT TCTCCACAAC AATGGACACA ACGGGTACCC CAATGGTACT 
TCTGCAGCAC TCCGTGAAAC TGGGGTTATT GAAAAACTGC TGACCTCTTA TGGATTTATT 
CAGTGTTCAG AACGGCAAGC TAGGCTTTTC TTCCACTGTT CACAGTATAA TGGCAACCTC 
CAGGACTTAA AAGTAGGAGA TGATGTGGAA TTTGAAGTAT CATCTGACCG GAGGACTGGG 
AAACCTATTG CTATTAAATT GGTGAAGATA AAACCAGAAA TACATCCTGA AGAACGAATG 
AATGGACAAG TTGTGTGCGC TGTTCCTCAC AACTTAGAGA GTAAATCTCC AGCTGCCCCG 
GGTCAGAGTC CAACAGGGAG TGTATGCTAC GAACGTAATG GGGAAGTATT TTATCTGACT 
TACACCTCTG AAGATGTGGA AGGGAACGTT CAGCTGGAAA CTGGAGACAA AATTAACTTT 
GTAATTGATA ACAATAAACA CACTGGTGCT GTAAGTGCTC GTAACATTAT GCTGTTGAAA 
AAGAAACAAG CTCGCTATCA AGGAGTAGTT TGTGCCATGA AGGAGGCGTT TGGCTTTATT 
GAAAGAGGTG ATGTTGTAAA AGAGATATTC TTTCACTATA GTGAATTTAA AGGTGATCTA 
GAAACCCTGC AGCCTGGAGA TGACGTGGAA TTCACAATCA AGGACAGAAA TGGTAAAGAA 
GTTGCAACAG ATGTCAGACT ATTGCCTCAA GGAACAGTCA TTTTTGAAGA TATCAGCATT 
GAACATTTTG AAGGAACTGT AACCAAAGTT ATCCCAAAAG TACCCAGTAA AAACCAGAAT 
GACCCATTGC CAGGACGAAT CAAAGTTGAC TTTGTGATTC CTAAAGAACT TCCCTTTGGA 
GACAAAGACA CAAAATCCAA AGTGACCCTG CTGGAAGGTG ACCATGTTAG GTTTAATATT 
TCAACAGACC GACGTGACAA ATTAGAACGA GCAACCAACA TAGAGGTTCT ATCAAATACA 
TTTCAGTTCA CTAATGAAGC CAGAGAGATG GGTGTGATTG CTGCCATGAG AGATGGTTTT 
GGCTTCATCA AGTGTGTGGA CCGTGATGCT CGTATGTTCT TCCACTTCAG TGAGATTCTC 
GATGGGAACC AGCTCCACAT TGCAGATGAA GTGGAGTTTA CTGTGGTCCC TGATATGCTC 
TCTGCCCAAA GAAATCATGC TATTAGGATT AAAAAACTTC CCAAGGGCAC GGTTTCATTC 
CATTCCCATT CAGATCATCG TTTTCTGGGC ACCGTAGAAA AAGAAGCCAC TTTTTCTAAT 
CCTAAAACTA CAAGCCCAAA TAAAGGCAAA GACAAGGAGG CAGAAGATGG CATTATTGCT 
TATGATGACT GTGGGGTGAA ACTGACTATT GCTTTTCAAG CCAAGGATGT GGAAGGATCT 
ACTTCTCCTC AAATAGGAGA TAAGGTTGAA TTTAGTATTA GTGACAAACA GAGGCCTGGA 
CAGCAGATTG CAACTTGTGT GAGACTTTTA GGTCGTAATT CTAATTCCAA AAGGCTCTTG 
GGTTATGTGG CAACTCTGAA AGATAATTTT GGATTTATTG AAACAGCTAA TCATGATAAG 
GAGATATTTT TCCATTATAG TGAGTTCTCT GGTGATGTTG ATAGCCTGGA ACTGGGAGAC 
ATGGTTGAAT ACAGCTTGTC CAAAGGCAAA GGCAATAAAG TCAGTGCTGA GAAAGTAAAC 
AAAACTCACT CAGTGAATGG CATCACTGAG GAAGCAAATC CCACCATCTA CTCTGGTAAA 
GTCATTCGTC CTCTGAGAGG CGTTGATCCA ACACAGATTG AATACCAAGG AATGATTGAG 
ATTGTGGAGG AGGGGGATAT GAAAGGTGAA GTGTATCCTT TTGGCATAGT TGGGATGGCC 
AACAAAGGGG ATTGCCTACA GAAAGGGGAG AGTGTTAAGT TCCAGTTGTG TGTACTTGGC 
CAAAATGCAC AAACTATGGC CTACAACATC ACACCCCTTC GTAGGGCTAC TGTGGAGTGT 
GTGAAAGATC AGTTTGGCTT TATTAACTAT GAAGTAGGAG ATAGCAAGAA GCTCTTTTTC 
CATGTGAAGG AAGTTCAGGA TGGCATTGAG CTACAGGCAG GAGATGAGGT GGAATTCTCA 
GTGATCCTTA ATCAGCGCAC TGGGAAATGT AGCGCCTGTA ATGTTTGGCG AGTCTGTGAA 
GGCCCCAAAG CTGTTGCAGC TCCTCGACCT GATCGGTTGG TTAATCGCTT AAAGAACATC 
ACCCTGGATG ATGCCAGTGC TCCACGTCTA ATGGTTCTTC GTCAGCCAAG GGGACCAGAT 
AACTCAATGG GATTTGGTGC AGAAAGAAAG ATCCGTCAAG CTGGTGTCAT TGACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446458.1
CDS	112..2508
Translation	MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKPEIHPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTSEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARYQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKDKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID

Target ORF information:

RefSeq Version	NM_054006.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus cold shock domain containing E1 (Csde1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_054006.1

ORF Insert Sequence:

ATGAGCTTTG ATCCAAACCT TCTCCACAAC AATGGACACA ACGGGTACCC CAATGGTACT 
TCTGCAGCAC TCCGTGAAAC TGGGGTTATT GAAAAACTGC TGACCTCTTA TGGATTTATT 
CAGTGTTCAG AACGGCAAGC TAGGCTTTTC TTCCACTGTT CACAGTATAA TGGCAACCTC 
CAGGACTTAA AAGTAGGAGA TGATGTGGAA TTTGAAGTAT CATCTGACCG GAGGACTGGG 
AAACCTATTG CTATTAAATT GGTGAAGATA AAACCAGAAA TACATCCTGA AGAACGAATG 
AATGGACAAG TTGTGTGCGC TGTTCCTCAC AACTTAGAGA GTAAATCTCC AGCTGCCCCG 
GGTCAGAGTC CAACAGGGAG TGTATGCTAC GAACGTAATG GGGAAGTATT TTATCTGACT 
TACACCTCTG AAGATGTGGA AGGGAACGTT CAGCTGGAAA CTGGAGACAA AATTAACTTT 
GTAATTGATA ACAATAAACA CACTGGTGCT GTAAGTGCTC GTAACATTAT GCTGTTGAAA 
AAGAAACAAG CTCGCTATCA AGGAGTAGTT TGTGCCATGA AGGAGGCGTT TGGCTTTATT 
GAAAGAGGTG ATGTTGTAAA AGAGATATTC TTTCACTATA GTGAATTTAA AGGTGATCTA 
GAAACCCTGC AGCCTGGAGA TGACGTGGAA TTCACAATCA AGGACAGAAA TGGTAAAGAA 
GTTGCAACAG ATGTCAGACT ATTGCCTCAA GGAACAGTCA TTTTTGAAGA TATCAGCATT 
GAACATTTTG AAGGAACTGT AACCAAAGTT ATCCCAAAAG TACCCAGTAA AAACCAGAAT 
GACCCATTGC CAGGACGAAT CAAAGTTGAC TTTGTGATTC CTAAAGAACT TCCCTTTGGA 
GACAAAGACA CAAAATCCAA AGTGACCCTG CTGGAAGGTG ACCATGTTAG GTTTAATATT 
TCAACAGACC GACGTGACAA ATTAGAACGA GCAACCAACA TAGAGGTTCT ATCAAATACA 
TTTCAGTTCA CTAATGAAGC CAGAGAGATG GGTGTGATTG CTGCCATGAG AGATGGTTTT 
GGCTTCATCA AGTGTGTGGA CCGTGATGCT CGTATGTTCT TCCACTTCAG TGAGATTCTC 
GATGGGAACC AGCTCCACAT TGCAGATGAA GTGGAGTTTA CTGTGGTCCC TGATATGCTC 
TCTGCCCAAA GAAATCATGC TATTAGGATT AAAAAACTTC CCAAGGGCAC GGTTTCATTC 
CATTCCCATT CAGATCATCG TTTTCTGGGC ACCGTAGAAA AAGAAGCCAC TTTTTCTAAT 
CCTAAAACTA CAAGCCCAAA TAAAGGCAAA GACAAGGAGG CAGAAGATGG CATTATTGCT 
TATGATGACT GTGGGGTGAA ACTGACTATT GCTTTTCAAG CCAAGGATGT GGAAGGATCT 
ACTTCTCCTC AAATAGGAGA TAAGGTTGAA TTTAGTATTA GTGACAAACA GAGGCCTGGA 
CAGCAGATTG CAACTTGTGT GAGACTTTTA GGTCGTAATT CTAATTCCAA AAGGCTCTTG 
GGTTATGTGG CAACTCTGAA AGATAATTTT GGATTTATTG AAACAGCTAA TCATGATAAG 
GAGATATTTT TCCATTATAG TGAGTTCTCT GGTGATGTTG ATAGCCTGGA ACTGGGAGAC 
ATGGTTGAAT ACAGCTTGTC CAAAGGCAAA GGCAATAAAG TCAGTGCTGA GAAAGTAAAC 
AAAACTCACT CAGTGAATGG CATCACTGAG GAAGCAAATC CCACCATCTA CTCTGGTAAA 
GTCATTCGTC CTCTGAGAGG CGTTGATCCA ACACAGATTG AATACCAAGG AATGATTGAG 
ATTGTGGAGG AGGGGGATAT GAAAGGTGAA GTGTATCCTT TTGGCATAGT TGGGATGGCC 
AACAAAGGGG ATTGCCTACA GAAAGGGGAG AGTGTTAAGT TCCAGTTGTG TGTACTTGGC 
CAAAATGCAC AAACTATGGC CTACAACATC ACACCCCTTC GTAGGGCTAC TGTGGAGTGT 
GTGAAAGATC AGTTTGGCTT TATTAACTAT GAAGTAGGAG ATAGCAAGAA GCTCTTTTTC 
CATGTGAAGG AAGTTCAGGA TGGCATTGAG CTACAGGCAG GAGATGAGGT GGAATTCTCA 
GTGATCCTTA ATCAGCGCAC TGGGAAATGT AGCGCCTGTA ATGTTTGGCG AGTCTGTGAA 
GGCCCCAAAG CTGTTGCAGC TCCTCGACCT GATCGGTTGG TTAATCGCTT AAAGAACATC 
ACCCTGGATG ATGCCAGTGC TCCACGTCTA ATGGTTCTTC GTCAGCCAAG GGGACCAGAT 
AACTCAATGG GATTTGGTGC AGAAAGAAAG ATCCGTCAAG CTGGTGTCAT TGACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Cell149(6)1393-406(2012 Jun)
Castello A,Fischer B,Eichelbaum K,Horos R,Beckmann BM,Strein C,Davey NE,Humphreys DT,Preiss T,Steinmetz LM,Krijgsveld J,Hentze MW

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Molecular cell46(5)674-90(2012 Jun)
Baltz AG,Munschauer M,Schwanh?usser B,Vasile A,Murakawa Y,Schueler M,Youngs N,Penfold-Brown D,Drew K,Milek M,Wyler E,Bonneau R,Selbach M,Dieterich C,Landthaler M

In vitro evidence that upstream of N-ras participates in the regulation of parathyroid hormone messenger ribonucleic acid stability.
Molecular endocrinology (Baltimore, Md.)20(7)1652-60(2006 Jul)
Dinur M,Kilav R,Sela-Brown A,Jacquemin-Sablon H,Naveh-Many T

UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant.
Genes & development18(16)2010-23(2004 Aug)
Chang TC,Yamashita A,Chen CY,Yamashita Y,Zhu W,Durdan S,Kahvejian A,Sonenberg N,Shyu AB

Proteomic analysis of the mouse liver mitochondrial inner membrane.
The Journal of biological chemistry278(42)41566-71(2003 Oct)
Da Cruz S,Xenarios I,Langridge J,Vilbois F,Parone PA,Martinou JC

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Csde1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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