Pcdha13 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha13
Entrez Gene ID	116742
Full Name	protocadherin alpha 13
Synonyms	Cnr5
General protein information	Preferred Names protocadherin alpha 13 Names protocadherin alpha-13
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	expressed in odontoblasts and early stage ameloblasts during incisor development; may play a role in cell-cell interactions during formation of dentin and enamel [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_053934.2	NP_446386.2	protocadherin alpha-13 precursor

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Pcdha12	NP_619604.1
Homo sapiens (human)	PCDHA13	NP_061727.1
Bos taurus (cattle)	PCDHA13	NP_001095976.1
Rattus norvegicus (Norway rat)	Pcdha13	NP_446386.2

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

Cadherin-related neuronal receptors in incisor development.
Fukumoto E, Sakai H, Fukumoto S, Yagi T, Takagi O, Kato Y
Journal of dental research82(1)17-22(2003 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha13 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha13 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa11099	NM_053934.2 Latest version!	Rattus norvegicus protocadherin alpha 13 (Pcdha13), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$559.30 $799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha13 ( NM_053934.2 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_446386.2 Rattus norvegicus protocadherin alpha 13 (Pcdha13), mRNA.

Price & Availability↑

CloneID	ORa11099
Clone ID Related Accession (Same CDS sequence)	NM_053934.2
Accession Version	NM_053934.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2853bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-08-24
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-13 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY573975.1. On Jul 14, 2006 this sequence version replaced NM_053934.1. ##Evidence-Data-START## Transcript exon combination :: AY573975.1, AB113396.1 [ECO:0000332] ##Evidence-Data-END##

ATGCTATTAT TCTCGCAAAG CGGCCCAGGA TCCCGGTGCC TCCTGCTCTC TTTCCTGCTC 
TTCTCAGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCACAG GACCTGGGGC TGGAGCTGAC GGAGCTGGTG 
CCCCGTCTAT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATTGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA AGGACATTAA CGACAACCCG CCCGTGTTCC CCGAAACCAA CAAAAACATT 
GTGATTGCAG AGTCGAGACC TCCAGAAACT AGATTTCCAC TAGATGGCGC ATCCGATGCA 
GATATTGGAA TCAATTCCGC CTTGACCTAC CGATTGGATC CCAGTGATTA TTTTGCTTTG 
GCCACGCAAA ACAATCGTGA GCGACCTTCT TCATTATCCC TCGTGTTAAA GAAATCATTA 
GACAGAGAAG AAATTCAGGA ACATAGTTTA TTACTAACAG CTAGTGACGG AGGCAAACCG 
GAACTGACTG GCACAGTTCA GCTGCTGATC ACCATCCTCG ACGTGAACGA CAATGCTCCA 
GAGTTTGATA GGTTCGTTTA TAGAGTTAGA GTGTTAGAGG ATGTATTTAA TGGAACATTG 
GTGATTAACT TAAACGCCAC AGATCCCGAC GAGGGTACAA ATGGAGATAT AATCTACTCC 
TTCAGGCGGC CTGTATCCCC TGCGGTAGTG CATGCATTTA ATATAGATCC CAACAGCGGA 
GAAGTTAGGA CAAAAGGCCT ACTGGATTTT GAAGAAATTA AACTGTATGA AATACCCGTG 
GAGGCAGTGG ATAAAGGGAA TATCCCAATG ACAGGCCATT GTACCCTTCT GGTGGAAGTA 
CTAGATGTAA ACGACAATGC ACCAGAGGTC ACGATCACTT CCCTGTCACT ACCAGTCAAA 
GAAGATGCTC AGCCAAGCAC TGTCATAGCT CTGGTCAGCG TGTCTGACCG AGACTCTGGT 
GACAACGGGC AGGTGACTTG TTCTTTGACA CCGCACCTCC CCTTCAAGCT GGTGTCCACT 
TTCAAGAATT ACTATTCATT AGTGTTGGAC AGCGCCCTGG ACCGTGAGAC CACAGCTGAC 
TATAAGGTGG TGGTGACAGC CCGAGACGGG GGCTCACCCT CTCTGTGGGC CACGGCCAGC 
GTGTCCGTTG AGGTGGCTGA CGTGAACGAC AACGTGCCTG TTTTCGCGCA GCCTGAATAC 
ACCGTGTTTG TGAAGGAGAA CAACCCGCCT GGCGCGCACA TCTTTACGGT GTCTGCAGTG 
GACACAGATG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TAGTGGAGCG GAGGGTAGGC 
GAGCGCTTGT TGTCAAGCTA TGTGTCTGTG CACGCTGAAA GCGGCAAGGT ATTTGCTCTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCAG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGTTCCCA CGCTGCTGCC TCACAGAGCT GTCGGAGCTG GGGGGGCAGT GAGTGAGCTT 
GTGCCTAGGT CAGTGGGTTC AGGGCATGTA GTGGCGAAGG TTCGCGCAGT AGATGCGGAC 
TCTGGTTACA ATGCGTGGCT GTCTTATGAG CTGCAGTTGG CAGCAGGGGC CATGAGCAGT 
CCGTTCCGCG TGGGTCTATA CACGGGCGAG ATCAGCACGA CGCGTGCCCT AGATGAAGCA 
GATGCACCGC GCCAGCGTCT GTTGGTGTTG GTGAAGGACC ACGGCGAGCC CGCGCTAACC 
GCCACAGCCA CTGTGCTGGT GTCTCTGGTG GAGAATGGCC AGGCACCCAA AATATCTTCC 
CTTGCTTCCG AGAGCATAGC ATCTTCGGAG GCGTCTCTGG TGACTGTCAA CGTGTACCTG 
ATCATTGCTA TTTGCGCGGT GTCCAGCCTG TTGGTGCTCA CGCTACTGCT TTACACTGCA 
CTGCGCTGCT CAGCAAGGCC CATTAATGGA GCCTGTGTTC CAGGGAAGCC CATGCTGGTG 
TGCTCAAGCG CAGTGGGGAG CTGGTCCTAC TCGCAGCAAA GGCGACAGAG GGTGTGCTCT 
GGAGAGGGCC CACCTAAGAC TGATCTTATG GCCTTCAGTC CCAGTCTCCC TCCTGTGCTA 
GGCTCTGCAG AGGATACATG TCAAAGAGAA AGGCAGGTAG AACATTTGAA AGAGCCCCGA 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CCGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA ACAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCAGAG GCAGGAGAGG TGTCCCCTCC AGTGGGCGCT 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCCG GCAACCCCAA ACAGCCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGTCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_446386.2
CDS	1..2853
Translation	MLLFSQSGPGSRCLLLSFLLFSAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPVFPETNKNIVIAESRPPETRFPLDGASDADIGINSALTYRLDPSDYFALATQNNRERPSSLSLVLKKSLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAPEFDRFVYRVRVLEDVFNGTLVINLNATDPDEGTNGDIIYSFRRPVSPAVVHAFNIDPNSGEVRTKGLLDFEEIKLYEIPVEAVDKGNIPMTGHCTLLVEVLDVNDNAPEVTITSLSLPVKEDAQPSTVIALVSVSDRDSGDNGQVTCSLTPHLPFKLVSTFKNYYSLVLDSALDRETTADYKVVVTARDGGSPSLWATASVSVEVADVNDNVPVFAQPEYTVFVKENNPPGAHIFTVSAVDTDAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNVPTLLPHRAVGAGGAVSELVPRSVGSGHVVAKVRAVDADSGYNAWLSYELQLAAGAMSSPFRVGLYTGEISTTRALDEADAPRQRLLVLVKDHGEPALTATATVLVSLVENGQAPKISSLASESIASSEASLVTVNVYLIIAICAVSSLLVLTLLLYTALRCSARPINGACVPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGPPKTDLMAFSPSLPPVLGSAEDTCQRERQVEHLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_053934.2
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 13 (Pcdha13), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_053934.2

ORF Insert Sequence:

ATGCTATTAT TCTCGCAAAG CGGCCCAGGA TCCCGGTGCC TCCTGCTCTC TTTCCTGCTC 
TTCTCAGCCT GGGAGGCAGG GAGCGGCCAG CTCCACTACT CCATCCCTGA GGAGGCCAAA 
CACGGCACCT TCGTGGGCCG CATCGCACAG GACCTGGGGC TGGAGCTGAC GGAGCTGGTG 
CCCCGTCTAT TCAGGGTGGC GTCCAAGGAC CGCGGAGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAGCA TCCACCTGGA GGTGATTGTG GACAGGCCGC TGCAGGTTTT CCACGTGGAG 
GTGGAGGTGA AGGACATTAA CGACAACCCG CCCGTGTTCC CCGAAACCAA CAAAAACATT 
GTGATTGCAG AGTCGAGACC TCCAGAAACT AGATTTCCAC TAGATGGCGC ATCCGATGCA 
GATATTGGAA TCAATTCCGC CTTGACCTAC CGATTGGATC CCAGTGATTA TTTTGCTTTG 
GCCACGCAAA ACAATCGTGA GCGACCTTCT TCATTATCCC TCGTGTTAAA GAAATCATTA 
GACAGAGAAG AAATTCAGGA ACATAGTTTA TTACTAACAG CTAGTGACGG AGGCAAACCG 
GAACTGACTG GCACAGTTCA GCTGCTGATC ACCATCCTCG ACGTGAACGA CAATGCTCCA 
GAGTTTGATA GGTTCGTTTA TAGAGTTAGA GTGTTAGAGG ATGTATTTAA TGGAACATTG 
GTGATTAACT TAAACGCCAC AGATCCCGAC GAGGGTACAA ATGGAGATAT AATCTACTCC 
TTCAGGCGGC CTGTATCCCC TGCGGTAGTG CATGCATTTA ATATAGATCC CAACAGCGGA 
GAAGTTAGGA CAAAAGGCCT ACTGGATTTT GAAGAAATTA AACTGTATGA AATACCCGTG 
GAGGCAGTGG ATAAAGGGAA TATCCCAATG ACAGGCCATT GTACCCTTCT GGTGGAAGTA 
CTAGATGTAA ACGACAATGC ACCAGAGGTC ACGATCACTT CCCTGTCACT ACCAGTCAAA 
GAAGATGCTC AGCCAAGCAC TGTCATAGCT CTGGTCAGCG TGTCTGACCG AGACTCTGGT 
GACAACGGGC AGGTGACTTG TTCTTTGACA CCGCACCTCC CCTTCAAGCT GGTGTCCACT 
TTCAAGAATT ACTATTCATT AGTGTTGGAC AGCGCCCTGG ACCGTGAGAC CACAGCTGAC 
TATAAGGTGG TGGTGACAGC CCGAGACGGG GGCTCACCCT CTCTGTGGGC CACGGCCAGC 
GTGTCCGTTG AGGTGGCTGA CGTGAACGAC AACGTGCCTG TTTTCGCGCA GCCTGAATAC 
ACCGTGTTTG TGAAGGAGAA CAACCCGCCT GGCGCGCACA TCTTTACGGT GTCTGCAGTG 
GACACAGATG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TAGTGGAGCG GAGGGTAGGC 
GAGCGCTTGT TGTCAAGCTA TGTGTCTGTG CACGCTGAAA GCGGCAAGGT ATTTGCTCTG 
CAGCCTCTGG ACCATGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCAG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AATGTTCCCA CGCTGCTGCC TCACAGAGCT GTCGGAGCTG GGGGGGCAGT GAGTGAGCTT 
GTGCCTAGGT CAGTGGGTTC AGGGCATGTA GTGGCGAAGG TTCGCGCAGT AGATGCGGAC 
TCTGGTTACA ATGCGTGGCT GTCTTATGAG CTGCAGTTGG CAGCAGGGGC CATGAGCAGT 
CCGTTCCGCG TGGGTCTATA CACGGGCGAG ATCAGCACGA CGCGTGCCCT AGATGAAGCA 
GATGCACCGC GCCAGCGTCT GTTGGTGTTG GTGAAGGACC ACGGCGAGCC CGCGCTAACC 
GCCACAGCCA CTGTGCTGGT GTCTCTGGTG GAGAATGGCC AGGCACCCAA AATATCTTCC 
CTTGCTTCCG AGAGCATAGC ATCTTCGGAG GCGTCTCTGG TGACTGTCAA CGTGTACCTG 
ATCATTGCTA TTTGCGCGGT GTCCAGCCTG TTGGTGCTCA CGCTACTGCT TTACACTGCA 
CTGCGCTGCT CAGCAAGGCC CATTAATGGA GCCTGTGTTC CAGGGAAGCC CATGCTGGTG 
TGCTCAAGCG CAGTGGGGAG CTGGTCCTAC TCGCAGCAAA GGCGACAGAG GGTGTGCTCT 
GGAGAGGGCC CACCTAAGAC TGATCTTATG GCCTTCAGTC CCAGTCTCCC TCCTGTGCTA 
GGCTCTGCAG AGGATACATG TCAAAGAGAA AGGCAGGTAG AACATTTGAA AGAGCCCCGA 
CAGCCCAACC CTGACTGGCG CTACTCTGCC TCGCTAAGAG CCGGCATGCA CAGCTCTGTG 
CACCTGGAGG AGGCTGGCAT TCTACGGGCT GGTCCAGGAG GGCCTGATCA ACAGTGGCCA 
ACAGTATCCA GTGCAACACC AGAACCAGAG GCAGGAGAGG TGTCCCCTCC AGTGGGCGCT 
GGTGTCAACA GCAACAGCTG GACCTTTAAA TACGGACCCG GCAACCCCAA ACAGCCCGGT 
CCCGGTGAGT TGCCAGACAA ATTCATTATC CCAGGATCTC CTGCAATCAT CTCCATCCGG 
CAGGAGTCTG CTAACAACCA AATTGACAAA AGCGATTTTA TAACCTTCGG CAAAAAGGAG 
GAGACCAAGA AAAAGAAGAA AAAGAAGAAG GGTAACAAGA CCCAGGAGAA AAAAGAGAAA 
GGGAACAGCA CGACGGACAA CAGTGACCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Neuroscience144(2)579-603(2007 Jan)
Zou C,Huang W,Ying G,Wu Q

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Genetics169(4)2179-88(2005 Apr)
Wu Q

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Genomics83(4)717-26(2004 Apr)
Yanase H,Sugino H,Yagi T

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Genome research14(1)79-89(2004 Jan)
Zhang T,Haws P,Wu Q

Cadherin-related neuronal receptors in incisor development.
Journal of dental research82(1)17-22(2003 Jan)
Fukumoto E,Sakai H,Fukumoto S,Yagi T,Takagi O,Kato Y

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Pcdha13 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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