Gene Symbol | CBX1 |
Entrez Gene ID | 468431 |
Full Name | chromobox 1 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » CBX1 cDNA ORF clone
Gene Symbol | CBX1 |
Entrez Gene ID | 468431 |
Full Name | chromobox 1 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_016930609.1 | XP_016786098.1 | chromobox protein homolog 1 isoform X2 |
NM_001252558.3 | NP_001239487.1 | chromobox protein homolog 1 |
NM_001252558.2 | NP_001239487.1 | chromobox protein homolog 1 |
XM_016930608.1 | XP_016786097.1 | chromobox protein homolog 1 isoform X1 |
XM_009431641.2 | XP_009429916.1 | chromobox protein homolog 1 isoform X1 |
XM_016930609.2 | XP_016786098.1 | chromobox protein homolog 1 isoform X1 |
LOC697437 | XP_001088037.1 | |
Homo sapiens (human) | CBX1 | NP_006798.1 |
Canis lupus familiaris (dog) | CBX1 | XP_548171.1 |
Bos taurus (cattle) | CBX1 | NP_001193344.1 |
Mus musculus (house mouse) | Cbx1 | NP_031648.1 |
Danio rerio (zebrafish) | cbx1b | NP_001002090.1 |
Pan troglodytes (chimpanzee) | CBX1 | NP_001239487.1 |
Gallus gallus (chicken) | CBX1 | NP_989663.1 |
Danio rerio (zebrafish) | cbx1a | NP_956040.1 |
Bos taurus (cattle) | LOC101904753 | XP_005210243.1 |
Rattus norvegicus (Norway rat) | Cbx1 | XP_006247297.1 |
Drosophila melanogaster (fruit fly) | HP1b | NP_001162713.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP004723 | XP_318105.4 |
Xenopus tropicalis (tropical clawed frog) | cbx1 | NP_001017150.1 |
Major chimpanzee-specific structural changes in sperm development-associated genes.
Kim RN, Kim DW, Choi SH, Chae SH, Nam SH, Kim DW, Kim A, Kang A, Park KH, Lee YS, Hirai M, Suzuki Y, Sugano S, Hashimoto K, Kim DS, Park HS
Functional & integrative genomics11(3)507-17(2011 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following CBX1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CBX1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | NM_001252558.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 | |
Comment | Comment: INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from DC529457.1 and NBAG03000498.1. On Jun 20, 2018 this sequence version replaced NM_001252558.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments to chimpanzee transcript DC529457.1 and human NM_001127228.1. ##Evidence-Data-START## Transcript exon combination :: AK306278.1, GABC01005622.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001239487.1 |
CDS | 254..811 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001252558.3 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | NM_001252558.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-13 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 | |
Comment | Comment: INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from DC529457.1, AACZ04040223.1 and AACZ04040224.1. On Jul 14, 2016 this sequence version replaced NM_001252558.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments to chimpanzee transcript DC529457.1 and human NM_001127228.1. ##Evidence-Data-START## Transcript exon combination :: AK306278.1, GABC01005622.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN01120800, SAMN01120804 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001239487.1 |
CDS | 254..811 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001252558.2 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | XM_016930609.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006484.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016786098.1 |
CDS | 477..1034 |
Translation |
Target ORF information:
Target ORF information:
|
XM_016930609.1 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | XM_016930608.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006484.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016786097.1 |
CDS | 287..844 |
Translation |
Target ORF information:
Target ORF information:
|
XM_016930608.1 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | XM_009431641.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006484.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009431641.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009429916.1 |
CDS | 477..1034 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009431641.2 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc00709 | |
Clone ID Related Accession (Same CDS sequence) | XM_016930609.1 , NM_001252558.3 , NM_001252558.2 , XM_016930608.1 , XM_009431641.2 , XM_016930609.2 | |
Accession Version | XM_016930609.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | chromobox protein homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036896.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_016930609.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016786098.1 |
CDS | 477..1034 |
Translation |
Target ORF information:
Target ORF information:
|
XM_016930609.2 |
1 | ATGGGGAAAA AACAAAACAA GAAGAAAGTG GAGGAGGTGC TAGAAGAGGA GGAAGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Major chimpanzee-specific structural changes in sperm development-associated genes. |