Gene Symbol | PATR-E |
Entrez Gene ID | 462540 |
Full Name | major histocompatibility complex, class I, E |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-E cDNA ORF clone
Gene Symbol | PATR-E |
Entrez Gene ID | 462540 |
Full Name | major histocompatibility complex, class I, E |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_024356941.1 | XP_024212709.1 | patr class I histocompatibility antigen, alpha chain E isoform X1 |
XM_009450818.3 | XP_009449093.1 | patr class I histocompatibility antigen, alpha chain E isoform X2 |
NM_001045498.1 | NP_001038963.1 | patr class I histocompatibility antigen, alpha chain E precursor |
XM_009450819.2 | XP_009449094.1 | patr class I histocompatibility antigen, alpha chain E isoform X3 |
XM_009450818.2 | XP_009449093.1 | patr class I histocompatibility antigen, alpha chain E isoform X2 |
XM_016954642.1 | XP_016810131.1 | patr class I histocompatibility antigen, alpha chain E isoform X1 |
MAMU-E | NP_001108438.1 | |
Mus musculus (house mouse) | C920025E04Rik | NP_001257934.1 |
Homo sapiens (human) | HLA-E | NP_005507.3 |
LOC100426346 | XP_002803707.1 | |
Rattus norvegicus (Norway rat) | RT1-S3 | NP_001008886.2 |
Pan troglodytes (chimpanzee) | PATR-E | NP_001038963.1 |
Mus musculus (house mouse) | H2-T23 | NP_034528.1 |
Major chimpanzee-specific structural changes in sperm development-associated genes.
Kim RN, Kim DW, Choi SH, Chae SH, Nam SH, Kim DW, Kim A, Kang A, Park KH, Lee YS, Hirai M, Suzuki Y, Sugano S, Hashimoto K, Kim DS, Park HS
Functional & integrative genomics11(3)507-17(2011 Sep)
Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity.
Shiina T, Ota M, Shimizu S, Katsuyama Y, Hashimoto N, Takasu M, Anzai T, Kulski JK, Kikkawa E, Naruse T, Kimura N, Yanagiya K, Watanabe A, Hosomichi K, Kohara S, Iwamoto C, Umehara Y, Meyer A, Wanner V, Sano K, Macquin C, Ikeo K, Tokunaga K, Gojobori T, Inoko H, Bahram S
Genetics173(3)1555-70(2006 Jul)
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence.
Anzai T, Shiina T, Kimura N, Yanagiya K, Kohara S, Shigenari A, Yamagata T, Kulski JK, Naruse TK, Fujimori Y, Fukuzumi Y, Yamazaki M, Tashiro H, Iwamoto C, Umehara Y, Imanishi T, Meyer A, Ikeo K, Gojobori T, Bahram S, Inoko H
Proceedings of the National Academy of Sciences of the United States of America100(13)7708-13(2003 Jun)
Genomic analysis of common chimpanzee major histocompatibility complex class I genes.
Adams EJ, Parham P
Immunogenetics53(3)200-8(2001 Apr)
Primate Mhc-E and -G alleles.
Arnaiz-Villena A, Martinez-Laso J, Alvarez M, Castro MJ, Varela P, Gomez-Casado E, Suarez B, Recio MJ, Vargas-Alarc?n G, Morales P
Immunogenetics46(4)251-66(1997)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PATR-E gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-E cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00087 | |
Clone ID Related Accession (Same CDS sequence) | NM_001045498.1 | |
Accession Version | NM_001045498.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1053bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-20 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF338354.1. On Oct 9, 2006 this sequence version replaced XM_518330.2. ##Evidence-Data-START## CDS exon combination :: AK305334.1 [ECO:0000331] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGTAGATG GAACCCTCCT TCTACTCCTC TCGGAGGCCC TGGCCCTTAC CCAGACCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001038963.1 |
CDS | 1..1053 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001045498.1 |
1 | ATGGTAGATG GAACCCTCCT TCTACTCCTC TCGGAGGCCC TGGCCCTTAC CCAGACCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39797 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356941.1 , XM_016954642.1 | |
Accession Version | XM_024356941.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1158bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212709.1 |
CDS | 18..1175 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356941.1 |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39797 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356941.1 , XM_016954642.1 | |
Accession Version | XM_016954642.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1158bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016810131.1 |
CDS | 18..1175 |
Translation |
Target ORF information:
Target ORF information:
|
XM_016954642.1 |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39799 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450819.2 | |
Accession Version | XM_009450819.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450819.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449094.1 |
CDS | 18..1058 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450819.2 |
1 | ATGGGTGTCG GGTTTCTAGA GAAGCCAATC AGCGTCGCCA CAACTCCCGA CTATAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39798 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450818.3 , XM_009450818.2 | |
Accession Version | XM_009450818.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1176bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_009450818.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAACCCT CCTTCTACTC CTCTCGGAGG CCCTGGCCCT TACCCAGACC TGGGCGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449093.1 |
CDS | 51..1226 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450818.3 |
1 | ATGGAACCCT CCTTCTACTC CTCTCGGAGG CCCTGGCCCT TACCCAGACC TGGGCGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc39798 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450818.3 , XM_009450818.2 | |
Accession Version | XM_009450818.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1176bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | patr class I histocompatibility antigen, alpha chain E isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006473.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450818.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAACCCT CCTTCTACTC CTCTCGGAGG CCCTGGCCCT TACCCAGACC TGGGCGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449093.1 |
CDS | 50..1225 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450818.2 |
1 | ATGGAACCCT CCTTCTACTC CTCTCGGAGG CCCTGGCCCT TACCCAGACC TGGGCGGGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Major chimpanzee-specific structural changes in sperm development-associated genes. |
Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. |
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. |
Genomic analysis of common chimpanzee major histocompatibility complex class I genes. |
Primate Mhc-E and -G alleles. |