Gene Symbol | PATR-B |
Entrez Gene ID | 450202 |
Full Name | major histocompatibility complex, class I, B |
Synonyms | CHLA-B2,ChLA-B1,PATR-B16,PATR-B17 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-B cDNA ORF clone
Gene Symbol | PATR-B |
Entrez Gene ID | 450202 |
Full Name | major histocompatibility complex, class I, B |
Synonyms | CHLA-B2,ChLA-B1,PATR-B16,PATR-B17 |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_024356939.1 | XP_024212707.1 | CHLA class I histocompatibility antigen, B-2 alpha chain isoform X2 |
XM_024356938.1 | XP_024212706.1 | CHLA class I histocompatibility antigen, B-2 alpha chain isoform X1 |
NM_001009081.1 | NP_001009081.1 | CHLA class I histocompatibility antigen, B-2 alpha chain precursor |
Canis lupus familiaris (dog) | DLA-64 | NP_001014400.1 |
Bos taurus (cattle) | BOLA-NC1 | NP_001099086.1 |
Danio rerio (zebrafish) | mhc1uka | XP_005159527.1 |
Danio rerio (zebrafish) | LOC101883648 | XP_005161941.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100127707 | NP_001265363.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100493954 | XP_002940102.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100495225 | XP_002940109.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100497446 | XP_004918996.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100494770 | XP_002940106.1 |
Xenopus tropicalis (tropical clawed frog) | mhc1b2 | NP_001234924.1 |
Bos taurus (cattle) | BOLA-A | NP_001035644.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100490553 | XP_002938999.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100497122 | XP_004918998.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100496024 | XP_002940114.2 |
Xenopus tropicalis (tropical clawed frog) | LOC101734387 | XP_004918994.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100495382 | XP_002940110.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100494618 | XP_002940105.1 |
Canis lupus familiaris (dog) | DLA-12 | NP_001014401.1 |
Bos taurus (cattle) | BOLA | NP_001033607.1 |
Bos taurus (cattle) | JSP.1 | NP_001035588.1 |
Danio rerio (zebrafish) | mhc1uba | NP_571546.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100217322 | XP_004919447.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100490896 | XP_002939001.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100496639 | XP_002940118.2 |
Xenopus tropicalis (tropical clawed frog) | mr1 | XP_002940116.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100496176 | XP_002940115.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100494130 | XP_004918993.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100494930 | XP_004918997.1 |
Xenopus tropicalis (tropical clawed frog) | LOC101730341 | XP_004919000.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100490378 | XP_002938998.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100487860 | XP_002944047.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100494293 | XP_002940103.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100495081 | XP_002940108.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100494456 | XP_002940104.2 |
Homo sapiens (human) | HLA-B | NP_005505.2 |
Pan troglodytes (chimpanzee) | PATR-B | NP_001009081.1 |
MAMU-B18 | NP_001108436.1 | |
Canis lupus familiaris (dog) | DLA88 | NP_001014767.1 |
Danio rerio (zebrafish) | LOC796419 | XP_001336749.4 |
Xenopus tropicalis (tropical clawed frog) | hla-a | NP_001106536.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100495868 | XP_002940113.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100490728 | XP_002939000.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100495703 | XP_002940112.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100496488 | XP_002940117.2 |
Xenopus tropicalis (tropical clawed frog) | LOC100170421 | NP_001123671.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100170569 | XP_004918999.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100495542 | XP_002940111.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100485167 | XP_002935389.2 |
Chimpanzee susceptibility to hepatitis C virus infection correlates with presence of Pt-KIR3DS2 and Pt-KIR2DL9: paired activating and inhibitory natural killer cell receptors.
Abi-Rached L, Guethlein LA, Norman PJ, Parham P
Immunogenetics67(10)625-8(2015 Oct)
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence.
Anzai T, Shiina T, Kimura N, Yanagiya K, Kohara S, Shigenari A, Yamagata T, Kulski JK, Naruse TK, Fujimori Y, Fukuzumi Y, Yamazaki M, Tashiro H, Iwamoto C, Umehara Y, Imanishi T, Meyer A, Ikeo K, Gojobori T, Bahram S, Inoko H
Proceedings of the National Academy of Sciences of the United States of America100(13)7708-13(2003 Jun)
Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man.
Kulski JK, Shiina T, Anzai T, Kohara S, Inoko H
Immunological reviews19095-122(2002 Dec)
Molecular and immunological significance of chimpanzee major histocompatibility complex haplotypes for hepatitis C virus immune response and vaccination studies.
Mizukoshi E, Nascimbeni M, Blaustein JB, Mihalik K, Rice CM, Liang TJ, Feinstone SM, Rehermann B
Journal of virology76(12)6093-103(2002 Jun)
Common chimpanzees have greater diversity than humans at two of the three highly polymorphic MHC class I genes.
Adams EJ, Cooper S, Thomson G, Parham P
Immunogenetics51(6)410-24(2000 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Data indicate that the compound genotype of homozygous C1 (+) Patr-B combined with either Pt-KIR3DS2 or Pt-KIR2DL9 is more strongly associated with HCV infection disease progression than either factor alone: [Pt-KIR3DS2 and Pt-KIR2DL9]
Title: Chimpanzee susceptibility to hepatitis C virus infection correlates with presence of Pt-KIR3DS2 and Pt-KIR2DL9: paired activating and inhibitory natural killer cell receptors.
The following PATR-B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc00048 | |
Clone ID Related Accession (Same CDS sequence) | NM_001009081.1 | |
Accession Version | NM_001009081.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1089bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-26 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | CHLA class I histocompatibility antigen, B-2 alpha chain precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from X13116.1. On or before Aug 23, 2008 this sequence version replaced NM_001009057.1, XM_518347.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: X13116.1, X13115.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03018695, SAMN03734999 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001009081.1 |
CDS | 1..1089 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001009081.1 |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc106841 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356938.1 | |
Accession Version | XM_024356938.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1176bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | CHLA class I histocompatibility antigen, B-2 alpha chain isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212706.1 |
CDS | 268..1443 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356938.1 |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc106842 | |
Clone ID Related Accession (Same CDS sequence) | XM_024356939.1 | |
Accession Version | XM_024356939.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1089bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | CHLA class I histocompatibility antigen, B-2 alpha chain isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024212707.1 |
CDS | 268..1356 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024356939.1 |
1 | ATGCAGGTCA CGGCGCCCCG AACCGTCCTC CTGCTGCTCT CGGCGGCCCT GGCCCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Chimpanzee susceptibility to hepatitis C virus infection correlates with presence of Pt-KIR3DS2 and Pt-KIR2DL9: paired activating and inhibitory natural killer cell receptors. |
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. |
Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. |
Molecular and immunological significance of chimpanzee major histocompatibility complex haplotypes for hepatitis C virus immune response and vaccination studies. |
Common chimpanzees have greater diversity than humans at two of the three highly polymorphic MHC class I genes. |