Gene Symbol | PATR-DMB |
Entrez Gene ID | 449592 |
Full Name | major histocompatibility complex, class II, DM beta |
Synonyms | MHC-DMB |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
ORF » Species Summary » Pan troglodytes » PATR-DMB cDNA ORF clone
Gene Symbol | PATR-DMB |
Entrez Gene ID | 449592 |
Full Name | major histocompatibility complex, class II, DM beta |
Synonyms | MHC-DMB |
Gene Type | protein-coding |
Organism | Pan troglodytes(chimpanzee) |
mRNA | Protein | Name |
---|---|---|
XM_009450793.2 | XP_009449068.1 | major histocompatibility complex, class II, DM beta isoform X1 |
XM_009450794.2 | XP_009449069.1 | major histocompatibility complex, class II, DM beta isoform X2 |
XM_009450794.3 | XP_009449069.1 | major histocompatibility complex, class II, DM beta isoform X2 |
NM_001134342.2 | NP_001127814.1 | major histocompatibility complex, class II, DM beta precursor |
XM_009450793.3 | XP_009449068.1 | major histocompatibility complex, class II, DM beta isoform X1 |
NM_001134342.3 | NP_001127814.1 | major histocompatibility complex, class II, DM beta precursor |
Bos taurus (cattle) | BOLA-DMB | NP_001035571.1 |
Pan troglodytes (chimpanzee) | PATR-DMB | NP_001127814.1 |
Mus musculus (house mouse) | H2-DMb1 | NP_034517.2 |
Homo sapiens (human) | HLA-DMB | NP_002109.2 |
Canis lupus familiaris (dog) | DLA-DMB | NP_001257999.1 |
Gallus gallus (chicken) | BMA2 | NP_001128638.1 |
Xenopus tropicalis (tropical clawed frog) | LOC100495183 | XP_002942059.1 |
MAMU-DMB | XP_002803734.1 | |
Mus musculus (house mouse) | H2-DMb2 | NP_034518.1 |
Allelic diversity at the primate MHC-DMB locus: presence of a conserved tyrosine inhibitory motif in the cytoplasmic tail.
Alvarez M, Recio MJ, Martinez-Laso J, P?rez-Blas M, Garcia-de-la-Torre C, Vargas-Alarc?n G, Alegre R, Gomez-Casado E, Arnaiz-Villena A
Tissue antigens51(2)174-82(1998 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PATR-DMB gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PATR-DMB cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPc01301 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134342.2 , NM_001134342.3 | |
Accession Version | NM_001134342.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 792bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-13 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AACZ04022817.1. On Jul 14, 2016 this sequence version replaced NM_001134342.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: L40492.1, L40558.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02045701, SAMN02189945 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001127814.1 |
CDS | 964..1755 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134342.2 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc01301 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134342.2 , NM_001134342.3 | |
Accession Version | NM_001134342.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 792bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from NBAG03000221.1. On Jun 20, 2018 this sequence version replaced NM_001134342.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: L40492.1, L40558.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02045701, SAMN02189945 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001127814.1 |
CDS | 964..1755 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134342.3 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29120 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450793.2 , XM_009450793.3 | |
Accession Version | XM_009450793.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 756bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006473.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450793.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449068.1 |
CDS | 1105..1860 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450793.2 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29120 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450793.2 , XM_009450793.3 | |
Accession Version | XM_009450793.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 756bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_009450793.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449068.1 |
CDS | 1104..1859 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450793.3 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29121 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450794.2 , XM_009450794.3 | |
Accession Version | XM_009450794.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 639bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-01 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006473.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 2, 2016 this sequence version replaced XM_009450794.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Pan troglodytes Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449069.1 |
CDS | 1106..1744 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450794.2 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPc29121 | |
Clone ID Related Accession (Same CDS sequence) | XM_009450794.2 , XM_009450794.3 | |
Accession Version | XM_009450794.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 639bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-19 | |
Organism | Pan troglodytes(chimpanzee) | |
Product | major histocompatibility complex, class II, DM beta isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_036885.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2018 this sequence version replaced XM_009450794.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pan troglodytes Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009449069.1 |
CDS | 1105..1743 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009450794.3 |
1 | ATGATCACAT TCCTGCCGCT GCTGCTGGGG CTCAGCCTGG GCTGCACAGG AGCAGGTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Allelic diversity at the primate MHC-DMB locus: presence of a conserved tyrosine inhibitory motif in the cytoplasmic tail. |