Gene Symbol | MAMU-DQB1 |
Entrez Gene ID | 716823 |
Full Name | major histocompatibility complex, class II, DQ beta 1 |
Synonyms | Mamu-DQB |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » MAMU-DQB1 cDNA ORF clone
Gene Symbol | MAMU-DQB1 |
Entrez Gene ID | 716823 |
Full Name | major histocompatibility complex, class II, DQ beta 1 |
Synonyms | Mamu-DQB |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
NM_001361258.1 | NP_001348187.1 | major histocompatibility complex, class II, DQ beta 1 precursor |
XM_015136082.2 | XP_014991568.2 | major histocompatibility complex, class II, DQ beta 1 isoform X1 |
XM_015129706.1 | XP_014985192.1 | major histocompatibility complex, class II, DQ beta 1 |
NM_001134297.1 | NP_001127769.1 | major histocompatibility complex, class II, DQ beta 1 precursor |
Bos taurus (cattle) | BLA-DQB | NP_001029840.2 |
Canis lupus familiaris (dog) | LOC100856137 | XP_003639463.1 |
Canis lupus familiaris (dog) | DLA-DQB1 | NP_001014403.1 |
Bos taurus (cattle) | BOLA-DQB | NP_001012694.2 |
Rattus norvegicus (Norway rat) | RT1-Bb | NP_001004084.1 |
MAMU-DQB1 | NP_001127769.1 | |
Bos taurus (cattle) | LA-DQB | NP_001074392.1 |
Xenopus tropicalis (tropical clawed frog) | hla-drb1 | NP_001039259.1 |
Homo sapiens (human) | HLA-DQB1 | NP_001230890.1 |
Pan troglodytes (chimpanzee) | LOC100616520 | XP_003339166.1 |
Mus musculus (house mouse) | H2-Ab1 | NP_996988.2 |
Molecular mechanism and cellular function of MHCII ubiquitination.
Oh J, Shin JS
Immunological reviews266(1)134-44(2015 Jul)
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
The major histocompatibility complex class II alleles Mamu-DRB1*1003 and -DRB1*0306 are enriched in a cohort of simian immunodeficiency virus-infected rhesus macaque elite controllers.
Giraldo-Vela JP, Rudersdorf R, Chung C, Qi Y, Wallace LT, Bimber B, Borchardt GJ, Fisk DL, Glidden CE, Loffredo JT, Piaskowski SM, Furlott JR, Morales-Martinez JP, Wilson NA, Rehrauer WM, Lifson JD, Carrington M, Watkins DI
Journal of virology82(2)859-70(2008 Jan)
Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations.
Doxiadis GG, Otting N, de Groot NG, de Groot N, Rouweler AJ, Noort R, Verschoor EJ, Bontjer I, Bontrop RE
Immunogenetics55(8)540-51(2003 Nov)
Sequence-based typing techniques for rhesus macaque MhcMamu-DQB1 allow the identification of more than 35 alleles.
Vigon N, Sauermann U
Tissue antigens59(2)88-94(2002 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following MAMU-DQB1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the MAMU-DQB1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb04718 | |
Clone ID Related Accession (Same CDS sequence) | NM_001134297.1 | |
Accession Version | NM_001134297.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-01-03 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | major histocompatibility complex, class II, DQ beta 1 precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF362445.1. On Aug 23, 2008 this sequence version replaced XR_013474.1. ##Evidence-Data-START## Transcript exon combination :: EF362445.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2707846, SAMN00622010 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCCTCGGA AGAAGGCTTT GCGGATCCCC GGAGGCCTTT GGGGGACAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001127769.1 |
CDS | 1..786 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134297.1 |
1 | ATGCCTCGGA AGAAGGCTTT GCGGATCCCC GGAGGCCTTT GGGGGACAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb57723 | |
Clone ID Related Accession (Same CDS sequence) | NM_001361258.1 | |
Accession Version | NM_001361258.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-28 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | major histocompatibility complex, class II, DQ beta 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JSUE03333501.1, EF362442.1 and JSUE03333502.1. On or before Mar 13, 2018 this sequence version replaced NM_001134297.1, XM_015129706.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: JV635598.1, JU478153.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4688324, SAMEA4688325 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCTTGGA AGAAGGCTTT GCGGATCCCT GGAGGCCTTT TGGGGGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001348187.1 |
CDS | 71..856 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001361258.1 |
1 | ATGCCTTGGA AGAAGGCTTT GCGGATCCCT GGAGGCCTTT TGGGGGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb57487 | |
Clone ID Related Accession (Same CDS sequence) | XM_015129706.1 | |
Accession Version | XM_015129706.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | major histocompatibility complex, class II, DQ beta 1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015076612.1) and transcript sequence (JV059461.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 46 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## |
1 | ATGTCTTGGA AGAAGGCTTT GCGGATCCCC GGCGGCCTTC GGGTAGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014985192.1 |
CDS | 2..787 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015129706.1 |
1 | ATGTCTTGGA AGAAGGCTTT GCGGATCCCC GGCGGCCTTC GGGTAGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb83768 | |
Clone ID Related Accession (Same CDS sequence) | XM_015136082.2 | |
Accession Version | XM_015136082.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 846bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | major histocompatibility complex, class II, DQ beta 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041757.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015136082.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTTGGA AGAAGGCTTT GCGGATCCCT GGAGGCCTTT TGGGGGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014991568.2 |
CDS | 83..928 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015136082.2 |
1 | ATGCCTTGGA AGAAGGCTTT GCGGATCCCT GGAGGCCTTT TGGGGGCAAC TGTGACCTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Molecular mechanism and cellular function of MHCII ubiquitination. |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |
The major histocompatibility complex class II alleles Mamu-DRB1*1003 and -DRB1*0306 are enriched in a cohort of simian immunodeficiency virus-infected rhesus macaque elite controllers. |
Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations. |
Sequence-based typing techniques for rhesus macaque MhcMamu-DQB1 allow the identification of more than 35 alleles. |