Gene Symbol | SDR42E1 |
Entrez Gene ID | 714229 |
Full Name | short chain dehydrogenase/reductase family 42E, member 1 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
ORF » Species Summary » Macaca mulatta » SDR42E1 cDNA ORF clone
Gene Symbol | SDR42E1 |
Entrez Gene ID | 714229 |
Full Name | short chain dehydrogenase/reductase family 42E, member 1 |
Gene Type | protein-coding |
Organism | Macaca mulatta(Rhesus monkey) |
mRNA | Protein | Name |
---|---|---|
XM_015126672.1 | XP_014982158.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X2 |
XM_015126671.2 | XP_014982157.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 |
XM_015126671.1 | XP_014982157.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 |
XM_015126673.1 | XP_014982159.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X2 |
NM_001194527.3 | NP_001181456.1 | short-chain dehydrogenase/reductase family 42E member 1 |
NM_001194527.2 | NP_001181456.1 | short-chain dehydrogenase/reductase family 42E member 1 |
XM_015126670.2 | XP_014982156.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 |
XM_015126670.1 | XP_014982156.1 | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 |
Pan troglodytes (chimpanzee) | SDR42E1 | XP_001148161.1 |
Canis lupus familiaris (dog) | SDR42E1 | XP_546811.2 |
Rattus norvegicus (Norway rat) | Sdr42e1 | NP_001258198.1 |
Homo sapiens (human) | SDR42E1 | NP_660151.2 |
Gallus gallus (chicken) | SDR42E1 | XP_004944317.1 |
Oryza sativa (rice) | Os02g0715200 | NP_001047924.1 |
Xenopus tropicalis (tropical clawed frog) | sdr42e1 | XP_004913668.1 |
SDR42E1 | XP_001111753.1 | |
Bos taurus (cattle) | SDR42E1 | NP_001073761.1 |
Mus musculus (house mouse) | Sdr42e1 | NP_083001.1 |
Arabidopsis thaliana (thale cress) | AT2G33630 | NP_180921.1 |
Danio rerio (zebrafish) | sdr42e1 | NP_001032779.1 |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SDR42E1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SDR42E1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | NM_001194527.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-28 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JSUE03026742.1. On Apr 1, 2016 this sequence version replaced NM_001194527.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: JV637606.1, JU323167.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4688330, SAMEA4688331 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001181456.1 |
CDS | 97..1278 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001194527.2 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | XM_015126671.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041773.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015126671.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982157.1 |
CDS | 98..1279 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126671.2 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | XM_015126671.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805861.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982157.1 |
CDS | 131..1312 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126671.1 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | XM_015126670.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-25 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041773.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2019 this sequence version replaced XM_015126670.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca mulatta Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982156.1 |
CDS | 400..1581 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126670.2 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | XM_015126670.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805861.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982156.1 |
CDS | 213..1394 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126670.1 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb00413 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126671.2 , XM_015126671.1 , NM_001194527.3 , NM_001194527.2 , XM_015126670.2 , XM_015126670.1 | |
Accession Version | NM_001194527.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from QNVO02000291.1. On Dec 18, 2019 this sequence version replaced NM_001194527.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: JV637606.1, SRR5038768.884798.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4688330, SAMEA4688331 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001181456.1 |
CDS | 97..1278 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001194527.3 |
1 | ATGGACCCCA AAAGATCTCA AAAGGAAACT GTCCTCATTA CAGGAGGAGG TGGCTATTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb55663 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126672.1 , XM_015126673.1 | |
Accession Version | XM_015126672.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1152bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805861.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCCAGG AAGACTTGAA TCAGCCCCAC CTTGATTGCC TGGGCTGTGC TCTGAACCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982158.1 |
CDS | 164..1315 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126672.1 |
1 | ATGAGCCAGG AAGACTTGAA TCAGCCCCAC CTTGATTGCC TGGGCTGTGC TCTGAACCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMb55663 | |
Clone ID Related Accession (Same CDS sequence) | XM_015126672.1 , XM_015126673.1 | |
Accession Version | XM_015126673.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1152bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-12-20 | |
Organism | Macaca mulatta(Rhesus monkey) | |
Product | short-chain dehydrogenase/reductase family 42E member 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_014805861.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Macaca mulatta Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCCAGG AAGACTTGAA TCAGCCCCAC CTTGATTGCC TGGGCTGTGC TCTGAACCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014982159.1 |
CDS | 166..1317 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015126673.1 |
1 | ATGAGCCAGG AAGACTTGAA TCAGCCCCAC CTTGATTGCC TGGGCTGTGC TCTGAACCAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A new rhesus macaque assembly and annotation for next-generation sequencing analyses. |