ORF » Species Summary » Mus musculus » Clrn1 cDNA ORF clone

Clrn1 cDNA ORF clone, Mus musculus(house mouse)

The following Clrn1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Clrn1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OMu02705 NM_153384.3
Latest version!		 Mus musculus clarin 1 (Clrn1), transcript variant 1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $139.30
$199.00
OMu02707 NM_153385.3
Latest version!		 Mus musculus clarin 1 (Clrn1), transcript variant 2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $139.30
$199.00
OMu02709 NM_153386.3
Latest version!		 Mus musculus clarin 1 (Clrn1), transcript variant 3, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $69.30
$99.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    Clrn1 ( NM_153384.3 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_700433.1 Mus musculus clarin 1 (Clrn1), transcript variant 1, mRNA.
    Price & Availability↑
    CloneID OMu02705
    Clone ID Related Accession (Same CDS sequence) NM_153384.3
    Accession Version NM_153384.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 753bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-09-15
    Organism Mus musculus(house mouse)
    Product clarin-1 isoform 1
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF495718.1, AC112998.15 and AK037267.1. On Nov 14, 2013 this sequence version replaced NM_153384.2. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF495718.1, AK037267.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATCAAGATC AATGAAGGAG AGGTACTCTC TGTATGAGGA CAAAGGAGAG 
    ACAGCAGTCT TCCCAGATTT GGTCCAAGCC ATCCCCGTAA GCATCCACAT CAATATTATT 
    CTCTTCTCCA TGATTCTTGT CGTCTTAACC ATGGTGGGGA CAGCCTTCTT CATGTACAAT 
    GCTTTTGGCA AGCCCTTTGA AACTCTTCAT GGACCACTGG GGCTCTATCT GGTCAGCTTC 
    ATTTCAGGCT CCTGTGGCTG TCTTGTCATG ATATTGTTTG CCTCTGAAGT GAAAGTCCAC 
    CGCCTTTCAG AGAAAATTGC AAATTTTAAA GAAGGGACCT ATGCCTACAG AACACAAAAC 
    GAAAACTATA CCACCTCATT CTGGGTTGTT TTCATTTGCT TTTTTGTTCA TTTTTTGAAT 
    GGGCTCCTGA TACGACTTGC TGGATTTCAG TTCCCTTTCA CAAAATCTAA AGAAACAGAG 
    ACCACTAATG TAGCTTCAGA TTTAATGTAC TGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_700433.1
    CDS173..925
    Translation

    Target ORF information:

    RefSeq Version NM_153384.3
    Organism Mus musculus(house mouse)
    Definition Mus musculus clarin 1 (Clrn1), transcript variant 1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_153384.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATCAAGATC AATGAAGGAG AGGTACTCTC TGTATGAGGA CAAAGGAGAG 
    ACAGCAGTCT TCCCAGATTT GGTCCAAGCC ATCCCCGTAA GCATCCACAT CAATATTATT 
    CTCTTCTCCA TGATTCTTGT CGTCTTAACC ATGGTGGGGA CAGCCTTCTT CATGTACAAT 
    GCTTTTGGCA AGCCCTTTGA AACTCTTCAT GGACCACTGG GGCTCTATCT GGTCAGCTTC 
    ATTTCAGGCT CCTGTGGCTG TCTTGTCATG ATATTGTTTG CCTCTGAAGT GAAAGTCCAC 
    CGCCTTTCAG AGAAAATTGC AAATTTTAAA GAAGGGACCT ATGCCTACAG AACACAAAAC 
    GAAAACTATA CCACCTCATT CTGGGTTGTT TTCATTTGCT TTTTTGTTCA TTTTTTGAAT 
    GGGCTCCTGA TACGACTTGC TGGATTTCAG TTCCCTTTCA CAAAATCTAA AGAAACAGAG 
    ACCACTAATG TAGCTTCAGA TTTAATGTAC TGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    Clrn1 ( NM_153385.3 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_700434.1 Mus musculus clarin 1 (Clrn1), transcript variant 2, mRNA.
    Price & Availability↑
    CloneID OMu02707
    Clone ID Related Accession (Same CDS sequence) NM_153385.3
    Accession Version NM_153385.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 699bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-09-15
    Organism Mus musculus(house mouse)
    Product clarin-1 isoform 2
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF495719.1, AC112998.15 and AK037267.1. On Nov 14, 2013 this sequence version replaced NM_153385.2. Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region compared to isoform 1. The encoded protein (isoform 2) is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF495719.1, BC145202.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849383, SAMN01164136 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATTCTTCCC AGATTTGGTC CAAGCCATCC CCGTAAGCAT CCACATCAAT 
    ATTATTCTCT TCTCCATGAT TCTTGTCGTC TTAACCATGG TGGGGACAGC CTTCTTCATG 
    TACAATGCTT TTGGCAAGCC CTTTGAAACT CTTCATGGAC CACTGGGGCT CTATCTGGTC 
    AGCTTCATTT CAGGCTCCTG TGGCTGTCTT GTCATGATAT TGTTTGCCTC TGAAGTGAAA 
    GTCCACCGCC TTTCAGAGAA AATTGCAAAT TTTAAAGAAG GGACCTATGC CTACAGAACA 
    CAAAACGAAA ACTATACCAC CTCATTCTGG GTTGTTTTCA TTTGCTTTTT TGTTCATTTT 
    TTGAATGGGC TCCTGATACG ACTTGCTGGA TTTCAGTTCC CTTTCACAAA ATCTAAAGAA 
    ACAGAGACCA CTAATGTAGC TTCAGATTTA ATGTACTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_700434.1
    CDS173..871
    Translation

    Target ORF information:

    RefSeq Version NM_153385.3
    Organism Mus musculus(house mouse)
    Definition Mus musculus clarin 1 (Clrn1), transcript variant 2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_153385.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATTCTTCCC AGATTTGGTC CAAGCCATCC CCGTAAGCAT CCACATCAAT 
    ATTATTCTCT TCTCCATGAT TCTTGTCGTC TTAACCATGG TGGGGACAGC CTTCTTCATG 
    TACAATGCTT TTGGCAAGCC CTTTGAAACT CTTCATGGAC CACTGGGGCT CTATCTGGTC 
    AGCTTCATTT CAGGCTCCTG TGGCTGTCTT GTCATGATAT TGTTTGCCTC TGAAGTGAAA 
    GTCCACCGCC TTTCAGAGAA AATTGCAAAT TTTAAAGAAG GGACCTATGC CTACAGAACA 
    CAAAACGAAA ACTATACCAC CTCATTCTGG GTTGTTTTCA TTTGCTTTTT TGTTCATTTT 
    TTGAATGGGC TCCTGATACG ACTTGCTGGA TTTCAGTTCC CTTTCACAAA ATCTAAAGAA 
    ACAGAGACCA CTAATGTAGC TTCAGATTTA ATGTACTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    Clrn1 ( NM_153386.3 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_700435.1 Mus musculus clarin 1 (Clrn1), transcript variant 3, mRNA.
    Price & Availability↑
    CloneID OMu02709
    Clone ID Related Accession (Same CDS sequence) NM_153386.3
    Accession Version NM_153386.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 519bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-09-15
    Organism Mus musculus(house mouse)
    Product clarin-1 isoform 3
    Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF495718.1, AC112998.15, AK041623.1 and AK037267.1. On Nov 14, 2013 this sequence version replaced NM_153386.2. Transcript Variant: This variant (3) lacks two in-frame exons in the coding region compared to variant 1. The encoded protein (isoform 3) is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF495720.1, AK041623.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138, SAMN01164139 [ECO:0000348] ##Evidence-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATGCTCCTG TGGCTGTCTT GTCATGATAT TGTTTGCCTC TGAAGTGAAA 
    GTCCACCGCC TTTCAGAGAA AATTGCAAAT TTTAAAGAAG GGACCTATGC CTACAGAACA 
    CAAAACGAAA ACTATACCAC CTCATTCTGG GTTGTTTTCA TTTGCTTTTT TGTTCATTTT 
    TTGAATGGGC TCCTGATACG ACTTGCTGGA TTTCAGTTCC CTTTCACAAA ATCTAAAGAA 
    ACAGAGACCA CTAATGTAGC TTCAGATTTA ATGTACTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq NP_700435.1
    CDS173..691
    Translation

    Target ORF information:

    RefSeq Version NM_153386.3
    Organism Mus musculus(house mouse)
    Definition Mus musculus clarin 1 (Clrn1), transcript variant 3, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 NM_153386.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGCCAAGCC AGCAGAAGAA GATCATCTTT TGCATGGCTG GCGTACTGAG CTTTCTCTGT 
    GCTCTTGGAG TGGTGACAGC AGTGGGCACC CCACTGTGGG TTAAAGCCAC TATCCTCTGC 
    AAAACAGGGG CTCTGCTTGT CAACGCGTCA GGGAAGGAGC TGGACAAGTT CATGGGCGAG 
    ATGCAGTATG GCCTTTTCCA CGGAGAAGGC GTAAGGCAAT GTGGGTTAGG AGCAAGGCCT 
    TTCCGGTTCT CATGCTCCTG TGGCTGTCTT GTCATGATAT TGTTTGCCTC TGAAGTGAAA 
    GTCCACCGCC TTTCAGAGAA AATTGCAAAT TTTAAAGAAG GGACCTATGC CTACAGAACA 
    CAAAACGAAA ACTATACCAC CTCATTCTGG GTTGTTTTCA TTTGCTTTTT TGTTCATTTT 
    TTGAATGGGC TCCTGATACG ACTTGCTGGA TTTCAGTTCC CTTTCACAAA ATCTAAAGAA 
    ACAGAGACCA CTAATGTAGC TTCAGATTTA ATGTACTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    Modeling and Preventing Progressive Hearing Loss in Usher Syndrome III.
    Scientific reports7(1)13480(2017 Oct)
    Geng R,Omar A,Gopal SR,Chen DH,Stepanyan R,Basch ML,Dinculescu A,Furness DN,Saperstein D,Hauswirth W,Lustig LR,Alagramam KN


    High-throughput discovery of novel developmental phenotypes.
    Nature537(7621)508-514(2016 09)
    Dickinson ME,Flenniken AM,Ji X,Teboul L,Wong MD,White JK,Meehan TF,Weninger WJ,Westerberg H,Adissu H,Baker CN,Bower L,Brown JM,Caddle LB,Chiani F,Clary D,Cleak J,Daly MJ,Denegre JM,Doe B,Dolan ME,Edie SM,Fuchs H,Gailus-Durner V,Galli A,Gambadoro A,Gallegos J,Guo S,Horner NR,Hsu CW,Johnson SJ,Kalaga S,Keith LC,Lanoue L,Lawson TN,Lek M,Mark M,Marschall S,Mason J,McElwee ML,Newbigging S,Nutter LM,Peterson KA,Ramirez-Solis R,Rowland DJ,Ryder E,Samocha KE,Seavitt JR,Selloum M,Szoke-Kovacs Z,Tamura M,Trainor AG,Tudose I,Wakana S,Warren J,Wendling O,West DB,Wong L,Yoshiki A,,,,,,,,,MacArthur DG,Tocchini-Valentini GP,Gao X,Flicek P,Bradley A,Skarnes WC,Justice MJ,Parkinson HE,Moore M,Wells S,Braun RE,Svenson KL,de Angelis MH,Herault Y,Mohun T,Mallon AM,Henkelman RM,Brown SD,Adams DJ,Lloyd KC,McKerlie C,Beaudet AL,Bu?an M,Murray SA


    A small molecule mitigates hearing loss in a mouse model of Usher syndrome III.
    Nature chemical biology12(6)444-51(2016 06)
    Alagramam KN,Gopal SR,Geng R,Chen DH,Nemet I,Lee R,Tian G,Miyagi M,Malagu KF,Lock CJ,Esmieu WR,Owens AP,Lindsay NA,Ouwehand K,Albertus F,Fischer DF,B?rli RW,MacLeod AM,Harte WE,Palczewski K,Imanishi Y


    Impairment of Vision in a Mouse Model of Usher Syndrome Type III.
    Investigative ophthalmology & visual science57(3)866-75(2016 Mar)
    Tian G,Lee R,Ropelewski P,Imanishi Y


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