COL9A1 cDNA ORF clone, Gallus gallus(chicken)

Gene
Clones
gRNAs

Summary

Gene Symbol	COL9A1
Entrez Gene ID	771873
Full Name	collagen type IX alpha 1 chain
General protein information	Preferred Names collagen type IX alpha 1 chain Names collagen alpha-1(IX) chain alpha(IX) collagen-proteoglycan cartilage alpha(IX) collagen collagen, type IX, alpha 1
Gene Type	protein-coding
Organism	Gallus gallus(chicken)

mRNA and Protein(s)

mRNA	Protein	Name
XM_015284748.1	XP_015140234.1	collagen alpha-1(IX) chain isoform X1
NM_001100911.1	NP_001094381.1	collagen alpha-1(IX) chain precursor

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	COL9A1	XP_001136406.1
Canis lupus familiaris (dog)	COL9A1	XP_538994.3
Danio rerio (zebrafish)	col9a1	NP_998429.2
Rattus norvegicus (Norway rat)	Col9a1	NP_001094312.1
Mus musculus (house mouse)	Col9a1	NP_031766.3
Danio rerio (zebrafish)	zgc:194937	NP_001124096.1
	COL9A1	XP_001111640.1
Xenopus tropicalis (tropical clawed frog)	col9a1	XP_002939444.2
Homo sapiens (human)	COL9A1	NP_001842.3
Gallus gallus (chicken)	COL9A1	NP_001094381.1

Gene Ontology
Bibliography

Related articles in PubMed

Cartilage type IX collagen-proteoglycan contains a large amino-terminal globular domain encoded by multiple exons.
Vasios G, Nishimura I, Konomi H, van der Rest M, Ninomiya Y, Olsen BR
The Journal of biological chemistry263(5)2324-9(1988 Feb)

A distinct class of vertebrate collagen genes encodes chicken type IX collagen polypeptides.
Lozano G, Ninomiya Y, Thompson H, Olsen BR
Proceedings of the National Academy of Sciences of the United States of America82(12)4050-4(1985 Jun)

The structure of type IX collagen.
van der Rest M, Mayne R, Ninomiya Y, Seidah NG, Chretien M, Olsen BR
The Journal of biological chemistry260(1)220-5(1985 Jan)

The structure of type IX collagen.
Mayne R, van der Rest M, Ninomiya Y, Olsen BR
Annals of the New York Academy of Sciences46038-46(1985)

Synthesis and characterization of cDNA encoding a cartilage-specific short collagen.
Ninomiya Y, Olsen BR
Proceedings of the National Academy of Sciences of the United States of America81(10)3014-8(1984 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following COL9A1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the COL9A1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OGa00093	NM_001100911.1 Latest version!	Gallus gallus collagen type IX alpha 1 chain (COL9A1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$510.30 $729.00
OGa34102	XM_015284748.1 Latest version!	Gallus gallus collagen, type IX, alpha 1 (COL9A1), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$426.30 $609.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

COL9A1 ( NM_001100911.1 ) cDNA ORF clone, Gallus gallus(chicken) -> NP_001094381.1 Gallus gallus collagen type IX alpha 1 chain (COL9A1), mRNA.

Price & Availability↑

CloneID	OGa00093
Clone ID Related Accession (Same CDS sequence)	NM_001100911.1
Accession Version	NM_001100911.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2763bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-26
Organism	Gallus gallus(chicken)
Product	collagen alpha-1(IX) chain precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AADN05000003.1. On Aug 11, 2007 this sequence version replaced XM_001234221.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA3109051, SAMN03354471 [ECO:0000348] ##Evidence-Data-END##

ATGAAAAGCA ACTGGAAAAT TACAGCTTTC TTGTATATGT GTAGTTTTCT GGGGTCTTTC 
ATCTCAGCTA CCATCCAGCA ACAATCAAGA TTGCCAGTCA TTCTGGGTGC TCGTCAAAGA 
ACTGATCTCT GCCCAACAAT CAGGATTGGC CAAGATGACT TGCCAGGCTT TGACCTGATT 
TCTCAGTTCC AGATAGAAAA AGCTGCTTCT CAAGGAATTG TCCAGAGAGT AGTGGGTTCT 
ACTGCTCTAC AAGTGGCTTA TAAATTGGGA CCCAATGTAG ACTTCAGGAT TCCAACCAGT 
GCAATATATT CCAATGGATT GCCTGATGAA TACTCCTTTC TTACTACTTT TCGGATGACT 
GGAGCCACAC TTCAGAAATA CTGGACTATT TGGCAGATTC AGGATTCTTC AGGAAAAGAA 
CAAGTTGGAG TGAATCTCAA TGGTCCAATG AAAAGCGTTG AGTTTTCTTA TAAAGGAGTG 
GATGGAAGTC TCCAGACTGC ATCATTTTTA CATTTGCCTT TCTTGTTTGA TTCCCAATGG 
CACAAGCTTA TGATAAGTGT GGAAACAACC AGCGTTACAC TTTTTATTGA CTGTATAAAG 
GTAGAAACCC TAAACATAAA ACCAAAGGGG AAAATCAGTG TTGATGGCTT CTCAGTGCTT 
GGAAGACTCA AAAATAATCC TCAAATTTCA GTTCCGTTTG AAGTCCAGTG GATGCTGATT 
CACTGCGATC CCCTGCGGCC CCAGAGAGAA GGTTGTGGTG AGCTCCCAGC CCGGATAAGC 
CAGACAGTGA TTGAGAGAGG TCTTCCTGGT CCACCAGGCC CCCCAGGTCC ACCAGGGCCA 
CCAGGAGTTC CTGGCATTGA TGGCATCGAT GGAGAGAGAG GACCTAACGG CCCCCCCGGT 
CCACCGGGTC CGGACGGCGA CGCAGGCAAA GCGGGATCCC CGGGCCTGCC TGGAGAGCCA 
GGAGCTGATG GGTTAACAGG CCCTGATGGA TCACCAGGTG CCACAGGACC GAAAGGACAG 
AAGGGTGAGC CAGGACCTCC AGGTGCTCGT GGACTTCCGG GCAAGGGTCT TCTTGGACCA 
CCTGGTCCAG CTGGTGCTGC AGGACTTCCC GGTGAAGTAG GCCGTGCTGG CCCACCTGGT 
GATCCAGGAA AAAGGGGACC ACCAGGACCA CCAGGACCAC CAGGCCCTCG AGGAACAATT 
GGTCTGCAAG ACGGTGACCC ATTGTGTCCC AATGCTTGTC CACCTGGCCG CCCAGGACAT 
GCTGGCCTAA TGGGAATGAA GGGACAGAAA GGCTCAAAAG GAGAATCTGG TGAACCAGGA 
AAACAAGGTT ATAAGGGTGA AGAAGGGGAT CAAGGTCCCA TTGGTGAAGT TGGAGCTCAA 
GGCCCTCCAG GCATCCTAGG TATCAGAGGT ATAACTGGAA TAACAGGACC TAAAGGTAAC 
AAAGGAGCTC GTGGCCTTGA TGGCGATCCT GGTCCCCAAG GTCTTCCTGG TGCACCTGGG 
GATCAAGGAC AGAGAGGTCC AGTGGGAGAA GAGGGTCCAA AGGGAGAAAG AGGTCCTCAA 
GGGACAAGAG GAATAAACGG TCTCCCTGGG CCTAAAGGAG AGTCTGGCTT GCCAGGAGTT 
GATGGCCGGG AAGGTATCCC TGGAATGCCC GGAGCAAAGG GTGAACCAGG AAAACCTGGT 
ACTCCAGGTG ATACAGGACC TCCGGGATTG CCAGGTTTAC CAGGCTCTCC AGGTATGAAA 
GGGATTCCTG GCCCAAAGGG TAATAGAGGT CCTCCTGGAG TGCCGGGTTT GATGGGAAAT 
TCTGGCAAAC CGGGTGAACA GGGACCAGAG GGGGAAGCAG GTCCAACGGG ACCCCGGGGA 
CCACCGGGTA GCAGAGGAGA GCCAGGTCCT GCAGGTCCTC CAGGTTTACC AGGGAAATGG 
GGTCCCCAGG GTGACATAGG ACTTCCTGGA CTGCCAGGTC CTCCAGGCCT ACCTGGTGGT 
AAGGGTGACC GGGGTTCAGC GGGTGAACCA GGACCTAAGG GTGAACAAGG TGCACCTGGA 
TCAGAAGGAG ATGCAGGAGA AAAGGGTGAC TTAGGTGATA TGGGATTACC AGGTGCAAAG 
GGATCTGTTG GTAATCCTGG AGACCCCGGT TCCCGTGGGC CGGAGGGAAG TCGGGGACTG 
CCTGGCATGG AAGGGCCACG AGGTGCACCT GGACCACGAG GCTTGCAGGG TGAACAAGGT 
GCTCCAGGTC TGCCTGGCAG CCAAGGTCCA GCTGGAAAAG AACCAACTGA TCAGCACATT 
AAGCAAGTCT GCATGAGAGT CATGCAAGAA CAACTCTCTC AGCTGGCAGC CAGTCTTAGG 
CGGCCAGAAT TTGGTGCTCC AGGTCTTCCT GGCCGACCTG GACCTCCAGG TGCTCCAGGG 
CCTCCTGGGG AAAATGGTTT CCCAGGACAG CTTGGGCCCC GTGGCTTGCC TGGCCTTAAA 
GGTCCTCCTG GTGAGATCGG TCGTAAAGGT CCAAAAGGTG AAGCAGGAGA AAGGGGAGAA 
AGAGGATTTC CAGGCAGAGG AGTGAAAGGT CTCCCGGGAC CGAGAGGTCT CCCAGGTGAA 
CCAGGCAAAC CCAGCTATGG CAGGGAAGGC CGTGATGGTG TACGAGGTCC CCCTGGGGTG 
GCCGGTCAGC CTGGGATTCC TGGTCCTCCT GGCCCTCCCG GCCCTCCTGG GTACTGCGAG 
CCGTCGTCTT GCCGAATGCA GGCTGGACAG AGAGCTGCTG GTAAGAACAT GAAAGGGCCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001094381.1
CDS	172..2934
Translation	MKSNWKITAFLYMCSFLGSFISATIQQQSRLPVILGARQRTDLCPTIRIGQDDLPGFDLISQFQIEKAASQGIVQRVVGSTALQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMTGATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGVDGSLQTASFLHLPFLFDSQWHKLMISVETTSVTLFIDCIKVETLNIKPKGKISVDGFSVLGRLKNNPQISVPFEVQWMLIHCDPLRPQREGCGELPARISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPGPPGPDGDAGKAGSPGLPGEPGADGLTGPDGSPGATGPKGQKGEPGPPGARGLPGKGLLGPPGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRPGHAGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPIGEVGAQGPPGILGIRGITGITGPKGNKGARGLDGDPGPQGLPGAPGDQGQRGPVGEEGPKGERGPQGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGTPGDTGPPGLPGLPGSPGMKGIPGPKGNRGPPGVPGLMGNSGKPGEQGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKWGPQGDIGLPGLPGPPGLPGGKGDRGSAGEPGPKGEQGAPGSEGDAGEKGDLGDMGLPGAKGSVGNPGDPGSRGPEGSRGLPGMEGPRGAPGPRGLQGEQGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLSQLAASLRRPEFGAPGLPGRPGPPGAPGPPGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEAGERGERGFPGRGVKGLPGPRGLPGEPGKPSYGREGRDGVRGPPGVAGQPGIPGPPGPPGPPGYCEPSSCRMQAGQRAAGKNMKGP

Target ORF information:

RefSeq Version	NM_001100911.1
Organism	Gallus gallus(chicken)
Definition	Gallus gallus collagen type IX alpha 1 chain (COL9A1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001100911.1

ORF Insert Sequence:

ATGAAAAGCA ACTGGAAAAT TACAGCTTTC TTGTATATGT GTAGTTTTCT GGGGTCTTTC 
ATCTCAGCTA CCATCCAGCA ACAATCAAGA TTGCCAGTCA TTCTGGGTGC TCGTCAAAGA 
ACTGATCTCT GCCCAACAAT CAGGATTGGC CAAGATGACT TGCCAGGCTT TGACCTGATT 
TCTCAGTTCC AGATAGAAAA AGCTGCTTCT CAAGGAATTG TCCAGAGAGT AGTGGGTTCT 
ACTGCTCTAC AAGTGGCTTA TAAATTGGGA CCCAATGTAG ACTTCAGGAT TCCAACCAGT 
GCAATATATT CCAATGGATT GCCTGATGAA TACTCCTTTC TTACTACTTT TCGGATGACT 
GGAGCCACAC TTCAGAAATA CTGGACTATT TGGCAGATTC AGGATTCTTC AGGAAAAGAA 
CAAGTTGGAG TGAATCTCAA TGGTCCAATG AAAAGCGTTG AGTTTTCTTA TAAAGGAGTG 
GATGGAAGTC TCCAGACTGC ATCATTTTTA CATTTGCCTT TCTTGTTTGA TTCCCAATGG 
CACAAGCTTA TGATAAGTGT GGAAACAACC AGCGTTACAC TTTTTATTGA CTGTATAAAG 
GTAGAAACCC TAAACATAAA ACCAAAGGGG AAAATCAGTG TTGATGGCTT CTCAGTGCTT 
GGAAGACTCA AAAATAATCC TCAAATTTCA GTTCCGTTTG AAGTCCAGTG GATGCTGATT 
CACTGCGATC CCCTGCGGCC CCAGAGAGAA GGTTGTGGTG AGCTCCCAGC CCGGATAAGC 
CAGACAGTGA TTGAGAGAGG TCTTCCTGGT CCACCAGGCC CCCCAGGTCC ACCAGGGCCA 
CCAGGAGTTC CTGGCATTGA TGGCATCGAT GGAGAGAGAG GACCTAACGG CCCCCCCGGT 
CCACCGGGTC CGGACGGCGA CGCAGGCAAA GCGGGATCCC CGGGCCTGCC TGGAGAGCCA 
GGAGCTGATG GGTTAACAGG CCCTGATGGA TCACCAGGTG CCACAGGACC GAAAGGACAG 
AAGGGTGAGC CAGGACCTCC AGGTGCTCGT GGACTTCCGG GCAAGGGTCT TCTTGGACCA 
CCTGGTCCAG CTGGTGCTGC AGGACTTCCC GGTGAAGTAG GCCGTGCTGG CCCACCTGGT 
GATCCAGGAA AAAGGGGACC ACCAGGACCA CCAGGACCAC CAGGCCCTCG AGGAACAATT 
GGTCTGCAAG ACGGTGACCC ATTGTGTCCC AATGCTTGTC CACCTGGCCG CCCAGGACAT 
GCTGGCCTAA TGGGAATGAA GGGACAGAAA GGCTCAAAAG GAGAATCTGG TGAACCAGGA 
AAACAAGGTT ATAAGGGTGA AGAAGGGGAT CAAGGTCCCA TTGGTGAAGT TGGAGCTCAA 
GGCCCTCCAG GCATCCTAGG TATCAGAGGT ATAACTGGAA TAACAGGACC TAAAGGTAAC 
AAAGGAGCTC GTGGCCTTGA TGGCGATCCT GGTCCCCAAG GTCTTCCTGG TGCACCTGGG 
GATCAAGGAC AGAGAGGTCC AGTGGGAGAA GAGGGTCCAA AGGGAGAAAG AGGTCCTCAA 
GGGACAAGAG GAATAAACGG TCTCCCTGGG CCTAAAGGAG AGTCTGGCTT GCCAGGAGTT 
GATGGCCGGG AAGGTATCCC TGGAATGCCC GGAGCAAAGG GTGAACCAGG AAAACCTGGT 
ACTCCAGGTG ATACAGGACC TCCGGGATTG CCAGGTTTAC CAGGCTCTCC AGGTATGAAA 
GGGATTCCTG GCCCAAAGGG TAATAGAGGT CCTCCTGGAG TGCCGGGTTT GATGGGAAAT 
TCTGGCAAAC CGGGTGAACA GGGACCAGAG GGGGAAGCAG GTCCAACGGG ACCCCGGGGA 
CCACCGGGTA GCAGAGGAGA GCCAGGTCCT GCAGGTCCTC CAGGTTTACC AGGGAAATGG 
GGTCCCCAGG GTGACATAGG ACTTCCTGGA CTGCCAGGTC CTCCAGGCCT ACCTGGTGGT 
AAGGGTGACC GGGGTTCAGC GGGTGAACCA GGACCTAAGG GTGAACAAGG TGCACCTGGA 
TCAGAAGGAG ATGCAGGAGA AAAGGGTGAC TTAGGTGATA TGGGATTACC AGGTGCAAAG 
GGATCTGTTG GTAATCCTGG AGACCCCGGT TCCCGTGGGC CGGAGGGAAG TCGGGGACTG 
CCTGGCATGG AAGGGCCACG AGGTGCACCT GGACCACGAG GCTTGCAGGG TGAACAAGGT 
GCTCCAGGTC TGCCTGGCAG CCAAGGTCCA GCTGGAAAAG AACCAACTGA TCAGCACATT 
AAGCAAGTCT GCATGAGAGT CATGCAAGAA CAACTCTCTC AGCTGGCAGC CAGTCTTAGG 
CGGCCAGAAT TTGGTGCTCC AGGTCTTCCT GGCCGACCTG GACCTCCAGG TGCTCCAGGG 
CCTCCTGGGG AAAATGGTTT CCCAGGACAG CTTGGGCCCC GTGGCTTGCC TGGCCTTAAA 
GGTCCTCCTG GTGAGATCGG TCGTAAAGGT CCAAAAGGTG AAGCAGGAGA AAGGGGAGAA 
AGAGGATTTC CAGGCAGAGG AGTGAAAGGT CTCCCGGGAC CGAGAGGTCT CCCAGGTGAA 
CCAGGCAAAC CCAGCTATGG CAGGGAAGGC CGTGATGGTG TACGAGGTCC CCCTGGGGTG 
GCCGGTCAGC CTGGGATTCC TGGTCCTCCT GGCCCTCCCG GCCCTCCTGG GTACTGCGAG 
CCGTCGTCTT GCCGAATGCA GGCTGGACAG AGAGCTGCTG GTAAGAACAT GAAAGGGCCA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

COL9A1 ( XM_015284748.1 ) cDNA ORF clone, Gallus gallus(chicken) -> XP_015140234.1 Gallus gallus collagen, type IX, alpha 1 (COL9A1), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OGa34102
Clone ID Related Accession (Same CDS sequence)	XM_015284748.1
Accession Version	XM_015284748.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2040bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-01-03
Organism	Gallus gallus(chicken)
Product	collagen alpha-1(IX) chain isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455843.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCTGGG CTGCATGGGG CCCTCTGCTT CTCGGGCTTT TCTTGCAGAT TTTTTGCCTC 
TGCCTTGCTC AAAGAGGTCT TCCTGGTCCA CCAGGCCCCC CAGGTCCACC AGGGCCACCA 
GGAGTTCCTG GCATTGATGG CATCGATGGA GAGAGAGGAC CTAACGGCCC CCCCGGTCCA 
CCGGGTCCGG ACGGCGACGC AGGCAAAGCG GGATCCCCGG GCCTGCCTGG AGAGCCAGGA 
GCTGATGGGT TAACAGGCCC TGATGGATCA CCAGGTGCCA CAGGACCGAA AGGACAGAAG 
GGTGAGCCAG GACCTCCAGG TGCTCGTGGA CTTCCGGGCA AGGGTCTTCT TGGACCACCT 
GGTCCAGCTG GTGCTGCAGG ACTTCCCGGT GAAGTAGGCC GTGCTGGCCC ACCTGGTGAT 
CCAGGAAAAA GGGGACCACC AGGACCACCA GGACCACCAG GCCCTCGAGG AACAATTGGT 
CTGCAAGACG GTGACCCATT GTGTCCCAAT GCTTGTCCAC CTGGCCGCCC AGGACATGCT 
GGCCTAATGG GAATGAAGGG ACAGAAAGGC TCAAAAGGAG AATCTGGTGA ACCAGGAAAA 
CAAGGTTATA AGGGTGAAGA AGGGGATCAA GGTCCCATTG GTGAAGTTGG AGCTCAAGGC 
CCTCCAGGCA TCCTAGGTAT CAGAGGTATA ACTGGAATAA CAGGACCTAA AGGTAACAAA 
GGAGCTCGTG GCCTTGATGG CGATCCTGGT CCCCAAGGTC TTCCTGGTGC ACCTGGGGAT 
CAAGGACAGA GAGGTCCAGT GGGAGAAGAG GGTCCAAAGG GAGAAAGAGG TCCTCAAGGG 
ACAAGAGGAA TAAACGGTCT CCCTGGGCCT AAAGGAGAGT CTGGCTTGCC AGGAGTTGAT 
GGCCGGGAAG GTATCCCTGG AATGCCCGGA GCAAAGGGTG AACCAGGAAA ACCTGGTACT 
CCAGGTGATA CAGGACCTCC GGGATTGCCA GGTTTACCAG GCTCTCCAGG TATGAAAGGG 
ATTCCTGGCC CAAAGGGTAA TAGAGGTCCT CCTGGAGTGC CGGGTTTGAT GGGAAATTCT 
GGCAAACCGG GTGAACAGGG ACCAGAGGGG GAAGCAGGTC CAACGGGACC CCGGGGACCA 
CCGGGTAGCA GAGGAGAGCC AGGTCCTGCA GGTCCTCCAG GTTTACCAGG GAAATGGGGT 
CCCCAGGGTG ACATAGGACT TCCTGGACTG CCAGGTCCTC CAGGCCTACC TGGTGGTAAG 
GGTGACCGGG GTTCAGCGGG TGAACCAGGA CCTAAGGGTG AACAAGGTGC ACCTGGATCA 
GAAGGAGATG CAGGAGAAAA GGGTGACTTA GGTGATATGG GATTACCAGG TGCAAAGGGA 
TCTGTTGGTA ATCCTGGAGA CCCCGGTTCC CGTGGGCCGG AGGGAAGTCG GGGACTGCCT 
GGCATGGAAG GGCCACGAGG TGCACCTGGA CCACGAGGCT TGCAGGGTGA ACAAGGTGCT 
CCAGGTCTGC CTGGCAGCCA AGGTCCAGCT GGAAAAGAAC CAACTGATCA GCACATTAAG 
CAAGTCTGCA TGAGAGTCAT GCAAGAACAA CTCTCTCAGC TGGCAGCCAG TCTTAGGCGG 
CCAGAATTTG GTGCTCCAGG TCTTCCTGGC CGACCTGGAC CTCCAGGTGC TCCAGGGCCT 
CCTGGGGAAA ATGGTTTCCC AGGACAGCTT GGGCCCCGTG GCTTGCCTGG CCTTAAAGGT 
CCTCCTGGTG AGATCGGTCG TAAAGGTCCA AAAGGTGAAG CAGGAGAAAG GGGAGAAAGA 
GGATTTCCAG GCAGAGGAGT GAAAGGTCTC CCGGGACCGA GAGGTCTCCC AGGTGAACCA 
GGCAAACCCA GCTATGGCAG GGAAGGCCGT GATGGTGTAC GAGGTCCCCC TGGGGTGGCC 
GGTCAGCCTG GGATTCCTGG TCCTCCTGGC CCTCCCGGCC CTCCTGGGTA CTGCGAGCCG 
TCGTCTTGCC GAATGCAGGC TGGACAGAGA GCTGCTGGTA AGAACATGAA AGGGCCATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_015140234.1
CDS	129..2168
Translation	MAWAAWGPLLLGLFLQIFCLCLAQRGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPGPPGPDGDAGKAGSPGLPGEPGADGLTGPDGSPGATGPKGQKGEPGPPGARGLPGKGLLGPPGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRPGHAGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPIGEVGAQGPPGILGIRGITGITGPKGNKGARGLDGDPGPQGLPGAPGDQGQRGPVGEEGPKGERGPQGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGTPGDTGPPGLPGLPGSPGMKGIPGPKGNRGPPGVPGLMGNSGKPGEQGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKWGPQGDIGLPGLPGPPGLPGGKGDRGSAGEPGPKGEQGAPGSEGDAGEKGDLGDMGLPGAKGSVGNPGDPGSRGPEGSRGLPGMEGPRGAPGPRGLQGEQGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLSQLAASLRRPEFGAPGLPGRPGPPGAPGPPGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEAGERGERGFPGRGVKGLPGPRGLPGEPGKPSYGREGRDGVRGPPGVAGQPGIPGPPGPPGPPGYCEPSSCRMQAGQRAAGKNMKGP

Target ORF information:

RefSeq Version	XM_015284748.1
Organism	Gallus gallus(chicken)
Definition	Gallus gallus collagen, type IX, alpha 1 (COL9A1), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_015284748.1

ORF Insert Sequence:

ATGGCCTGGG CTGCATGGGG CCCTCTGCTT CTCGGGCTTT TCTTGCAGAT TTTTTGCCTC 
TGCCTTGCTC AAAGAGGTCT TCCTGGTCCA CCAGGCCCCC CAGGTCCACC AGGGCCACCA 
GGAGTTCCTG GCATTGATGG CATCGATGGA GAGAGAGGAC CTAACGGCCC CCCCGGTCCA 
CCGGGTCCGG ACGGCGACGC AGGCAAAGCG GGATCCCCGG GCCTGCCTGG AGAGCCAGGA 
GCTGATGGGT TAACAGGCCC TGATGGATCA CCAGGTGCCA CAGGACCGAA AGGACAGAAG 
GGTGAGCCAG GACCTCCAGG TGCTCGTGGA CTTCCGGGCA AGGGTCTTCT TGGACCACCT 
GGTCCAGCTG GTGCTGCAGG ACTTCCCGGT GAAGTAGGCC GTGCTGGCCC ACCTGGTGAT 
CCAGGAAAAA GGGGACCACC AGGACCACCA GGACCACCAG GCCCTCGAGG AACAATTGGT 
CTGCAAGACG GTGACCCATT GTGTCCCAAT GCTTGTCCAC CTGGCCGCCC AGGACATGCT 
GGCCTAATGG GAATGAAGGG ACAGAAAGGC TCAAAAGGAG AATCTGGTGA ACCAGGAAAA 
CAAGGTTATA AGGGTGAAGA AGGGGATCAA GGTCCCATTG GTGAAGTTGG AGCTCAAGGC 
CCTCCAGGCA TCCTAGGTAT CAGAGGTATA ACTGGAATAA CAGGACCTAA AGGTAACAAA 
GGAGCTCGTG GCCTTGATGG CGATCCTGGT CCCCAAGGTC TTCCTGGTGC ACCTGGGGAT 
CAAGGACAGA GAGGTCCAGT GGGAGAAGAG GGTCCAAAGG GAGAAAGAGG TCCTCAAGGG 
ACAAGAGGAA TAAACGGTCT CCCTGGGCCT AAAGGAGAGT CTGGCTTGCC AGGAGTTGAT 
GGCCGGGAAG GTATCCCTGG AATGCCCGGA GCAAAGGGTG AACCAGGAAA ACCTGGTACT 
CCAGGTGATA CAGGACCTCC GGGATTGCCA GGTTTACCAG GCTCTCCAGG TATGAAAGGG 
ATTCCTGGCC CAAAGGGTAA TAGAGGTCCT CCTGGAGTGC CGGGTTTGAT GGGAAATTCT 
GGCAAACCGG GTGAACAGGG ACCAGAGGGG GAAGCAGGTC CAACGGGACC CCGGGGACCA 
CCGGGTAGCA GAGGAGAGCC AGGTCCTGCA GGTCCTCCAG GTTTACCAGG GAAATGGGGT 
CCCCAGGGTG ACATAGGACT TCCTGGACTG CCAGGTCCTC CAGGCCTACC TGGTGGTAAG 
GGTGACCGGG GTTCAGCGGG TGAACCAGGA CCTAAGGGTG AACAAGGTGC ACCTGGATCA 
GAAGGAGATG CAGGAGAAAA GGGTGACTTA GGTGATATGG GATTACCAGG TGCAAAGGGA 
TCTGTTGGTA ATCCTGGAGA CCCCGGTTCC CGTGGGCCGG AGGGAAGTCG GGGACTGCCT 
GGCATGGAAG GGCCACGAGG TGCACCTGGA CCACGAGGCT TGCAGGGTGA ACAAGGTGCT 
CCAGGTCTGC CTGGCAGCCA AGGTCCAGCT GGAAAAGAAC CAACTGATCA GCACATTAAG 
CAAGTCTGCA TGAGAGTCAT GCAAGAACAA CTCTCTCAGC TGGCAGCCAG TCTTAGGCGG 
CCAGAATTTG GTGCTCCAGG TCTTCCTGGC CGACCTGGAC CTCCAGGTGC TCCAGGGCCT 
CCTGGGGAAA ATGGTTTCCC AGGACAGCTT GGGCCCCGTG GCTTGCCTGG CCTTAAAGGT 
CCTCCTGGTG AGATCGGTCG TAAAGGTCCA AAAGGTGAAG CAGGAGAAAG GGGAGAAAGA 
GGATTTCCAG GCAGAGGAGT GAAAGGTCTC CCGGGACCGA GAGGTCTCCC AGGTGAACCA 
GGCAAACCCA GCTATGGCAG GGAAGGCCGT GATGGTGTAC GAGGTCCCCC TGGGGTGGCC 
GGTCAGCCTG GGATTCCTGG TCCTCCTGGC CCTCCCGGCC CTCCTGGGTA CTGCGAGCCG 
TCGTCTTGCC GAATGCAGGC TGGACAGAGA GCTGCTGGTA AGAACATGAA AGGGCCATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Cartilage type IX collagen-proteoglycan contains a large amino-terminal globular domain encoded by multiple exons.
The Journal of biological chemistry263(5)2324-9(1988 Feb)
Vasios G,Nishimura I,Konomi H,van der Rest M,Ninomiya Y,Olsen BR

A distinct class of vertebrate collagen genes encodes chicken type IX collagen polypeptides.
Proceedings of the National Academy of Sciences of the United States of America82(12)4050-4(1985 Jun)
Lozano G,Ninomiya Y,Thompson H,Olsen BR

The structure of type IX collagen.
The Journal of biological chemistry260(1)220-5(1985 Jan)
van der Rest M,Mayne R,Ninomiya Y,Seidah NG,Chretien M,Olsen BR

The structure of type IX collagen.
Annals of the New York Academy of Sciences46038-46(1985)
Mayne R,van der Rest M,Ninomiya Y,Olsen BR

Synthesis and characterization of cDNA encoding a cartilage-specific short collagen.
Proceedings of the National Academy of Sciences of the United States of America81(10)3014-8(1984 May)
Ninomiya Y,Olsen BR

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COL9A1 cDNA ORF clone, Gallus gallus(chicken)

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ORF Insert Sequence:

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