CG5380 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	CG5380
Entrez Gene ID	42619
Full Name	CG5380 gene product from transcript CG5380-RB
Synonyms	Dmel\CG5380
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3R Map Location: 94A6-94A6

mRNA and Protein(s)

mRNA	Protein	Name
NM_142772.1	NP_651029.1	uncharacterized protein, isoform A
NM_001260308.1	NP_001247237.1	uncharacterized protein, isoform B

Pathways from BioSystems

Homologies

Homo sapiens (human)	POLR3F	NP_006457.2
Canis lupus familiaris (dog)	POLR3F	XP_857138.2
Rattus norvegicus (Norway rat)	Polr3f	NP_001101254.1
Kluyveromyces lactis	KLLA0D04532g	XP_453264.1
Eremothecium gossypii	AGOS_AER191W	NP_985048.1
	POLR3F	XP_001090177.2
Gallus gallus (chicken)	POLR3F	NP_001186330.1
Saccharomyces cerevisiae (baker's yeast)	RPC34	NP_014400.1
Xenopus tropicalis (tropical clawed frog)	polr3f	NP_989319.1
Pan troglodytes (chimpanzee)	POLR3F	XP_003316891.1
Bos taurus (cattle)	POLR3F	NP_001033237.1
Drosophila melanogaster (fruit fly)	CG5380	NP_001247237.1
Caenorhabditis elegans (roundworm)	W09C3.4	NP_491427.1
Schizosaccharomyces pombe (fission yeast)	rpc34	NP_588398.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP011973	XP_320558.3
Mus musculus (house mouse)	Polr3f	NP_084039.2
Danio rerio (zebrafish)	polr3f	NP_957481.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following CG5380 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CG5380 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa05679	NM_142772.1 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant A (CG5380), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
OFa05679	NM_001260308.1 Latest version!	Drosophila melanogaster uncharacterized protein, transcript variant B (CG5380), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

CG5380 ( NM_142772.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_651029.1 Drosophila melanogaster uncharacterized protein, transcript variant A (CG5380), mRNA.

Price & Availability↑

CloneID	OFa05679
Clone ID Related Accession (Same CDS sequence)	NM_142772.1 , NM_001260308.1
Accession Version	NM_142772.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCCACTG AGGTGTCGCA ACTTTTGCTG GCGGTGGTCC AGGGCATCCC AGCCGGTGCC 
ACCAACGATG ACCTGACCAA GGCGCTGCCC GATGTGCCGG CGGCCACGCG GGTGGAAGCT 
TTGAATATAC TGCTGCAGGA GGGCGGGATC GAGATCCTGA AGAAGGGTGA AAAGCTGGTG 
TACCGTGCCA AGGACCCGGA AAAGAAGAGT GCCCTGCCCA AGGATGCGGA CAATGAGGAG 
AAGGTCGTCT ACGGCATTGT TGAGGAGGGC GGCAACAAAG GCATCTGGAT TAGGGATATA 
CGTATGAAGT CCAACCTGAA CATGATACAG CTCAACAAGA TCCTCAAGAA CCTAGAAACC 
AAGAAGCTCA TCAAGGCGGT CAAGTCGGTG AACGCCAGCA AAAAGAAAGT GTACATGCTG 
TACAACCTAG AGCCGGATCT CTCCATTACG GGAGGAGCCT GGTACCAGGA TCAGGACTTT 
GAGGTGGAGT TTGTGGATGT GCTCAACCAG CAGTGCCTGC GCTTTCTGCA AATGAAACGC 
GACAGTGCGG AAAAGAAGCG CGAGGGGCCA CTGGCCTTCA AGCAGATGTC TTGCTGCACG 
GTGAACGAGG TTCAGAAGTT CATCTCGGAC TTGGGCATCA GCAAGGTTAA TCTGGCGGAG 
GCCGATCTGG AAACAATTCT CAAAACAGTG GTGTACGACG GCAATGCGGA GCGAGTGCGC 
CAGCAGGATG GATCCTTCGT CTACCGGGCG GTGAACGCCC CACTTCCTCC GACTGGTCTG 
GTCCAGATGC CATGTGGCAT TTGTCCCGTC ATCAAAAACT GCTCCAATTG TGGCGATGTA 
ACTGCTATAA CTTGTGAATA TATGCGAGAT TGGTTGGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_651029.1
CDS	6..887
Translation	MATEVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD

Target ORF information:

RefSeq Version	NM_142772.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant A (CG5380), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_142772.1

ORF Insert Sequence:

ATGGCCACTG AGGTGTCGCA ACTTTTGCTG GCGGTGGTCC AGGGCATCCC AGCCGGTGCC 
ACCAACGATG ACCTGACCAA GGCGCTGCCC GATGTGCCGG CGGCCACGCG GGTGGAAGCT 
TTGAATATAC TGCTGCAGGA GGGCGGGATC GAGATCCTGA AGAAGGGTGA AAAGCTGGTG 
TACCGTGCCA AGGACCCGGA AAAGAAGAGT GCCCTGCCCA AGGATGCGGA CAATGAGGAG 
AAGGTCGTCT ACGGCATTGT TGAGGAGGGC GGCAACAAAG GCATCTGGAT TAGGGATATA 
CGTATGAAGT CCAACCTGAA CATGATACAG CTCAACAAGA TCCTCAAGAA CCTAGAAACC 
AAGAAGCTCA TCAAGGCGGT CAAGTCGGTG AACGCCAGCA AAAAGAAAGT GTACATGCTG 
TACAACCTAG AGCCGGATCT CTCCATTACG GGAGGAGCCT GGTACCAGGA TCAGGACTTT 
GAGGTGGAGT TTGTGGATGT GCTCAACCAG CAGTGCCTGC GCTTTCTGCA AATGAAACGC 
GACAGTGCGG AAAAGAAGCG CGAGGGGCCA CTGGCCTTCA AGCAGATGTC TTGCTGCACG 
GTGAACGAGG TTCAGAAGTT CATCTCGGAC TTGGGCATCA GCAAGGTTAA TCTGGCGGAG 
GCCGATCTGG AAACAATTCT CAAAACAGTG GTGTACGACG GCAATGCGGA GCGAGTGCGC 
CAGCAGGATG GATCCTTCGT CTACCGGGCG GTGAACGCCC CACTTCCTCC GACTGGTCTG 
GTCCAGATGC CATGTGGCAT TTGTCCCGTC ATCAAAAACT GCTCCAATTG TGGCGATGTA 
ACTGCTATAA CTTGTGAATA TATGCGAGAT TGGTTGGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

CG5380 ( NM_001260308.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001247237.1 Drosophila melanogaster uncharacterized protein, transcript variant B (CG5380), mRNA.

Price & Availability↑

CloneID	OFa05679
Clone ID Related Accession (Same CDS sequence)	NM_142772.1 , NM_001260308.1
Accession Version	NM_001260308.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGGCCACTG AGGTGTCGCA ACTTTTGCTG GCGGTGGTCC AGGGCATCCC AGCCGGTGCC 
ACCAACGATG ACCTGACCAA GGCGCTGCCC GATGTGCCGG CGGCCACGCG GGTGGAAGCT 
TTGAATATAC TGCTGCAGGA GGGCGGGATC GAGATCCTGA AGAAGGGTGA AAAGCTGGTG 
TACCGTGCCA AGGACCCGGA AAAGAAGAGT GCCCTGCCCA AGGATGCGGA CAATGAGGAG 
AAGGTCGTCT ACGGCATTGT TGAGGAGGGC GGCAACAAAG GCATCTGGAT TAGGGATATA 
CGTATGAAGT CCAACCTGAA CATGATACAG CTCAACAAGA TCCTCAAGAA CCTAGAAACC 
AAGAAGCTCA TCAAGGCGGT CAAGTCGGTG AACGCCAGCA AAAAGAAAGT GTACATGCTG 
TACAACCTAG AGCCGGATCT CTCCATTACG GGAGGAGCCT GGTACCAGGA TCAGGACTTT 
GAGGTGGAGT TTGTGGATGT GCTCAACCAG CAGTGCCTGC GCTTTCTGCA AATGAAACGC 
GACAGTGCGG AAAAGAAGCG CGAGGGGCCA CTGGCCTTCA AGCAGATGTC TTGCTGCACG 
GTGAACGAGG TTCAGAAGTT CATCTCGGAC TTGGGCATCA GCAAGGTTAA TCTGGCGGAG 
GCCGATCTGG AAACAATTCT CAAAACAGTG GTGTACGACG GCAATGCGGA GCGAGTGCGC 
CAGCAGGATG GATCCTTCGT CTACCGGGCG GTGAACGCCC CACTTCCTCC GACTGGTCTG 
GTCCAGATGC CATGTGGCAT TTGTCCCGTC ATCAAAAACT GCTCCAATTG TGGCGATGTA 
ACTGCTATAA CTTGTGAATA TATGCGAGAT TGGTTGGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001247237.1
CDS	86..967
Translation	MATEVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD

Target ORF information:

RefSeq Version	NM_001260308.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein, transcript variant B (CG5380), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001260308.1

ORF Insert Sequence:

ATGGCCACTG AGGTGTCGCA ACTTTTGCTG GCGGTGGTCC AGGGCATCCC AGCCGGTGCC 
ACCAACGATG ACCTGACCAA GGCGCTGCCC GATGTGCCGG CGGCCACGCG GGTGGAAGCT 
TTGAATATAC TGCTGCAGGA GGGCGGGATC GAGATCCTGA AGAAGGGTGA AAAGCTGGTG 
TACCGTGCCA AGGACCCGGA AAAGAAGAGT GCCCTGCCCA AGGATGCGGA CAATGAGGAG 
AAGGTCGTCT ACGGCATTGT TGAGGAGGGC GGCAACAAAG GCATCTGGAT TAGGGATATA 
CGTATGAAGT CCAACCTGAA CATGATACAG CTCAACAAGA TCCTCAAGAA CCTAGAAACC 
AAGAAGCTCA TCAAGGCGGT CAAGTCGGTG AACGCCAGCA AAAAGAAAGT GTACATGCTG 
TACAACCTAG AGCCGGATCT CTCCATTACG GGAGGAGCCT GGTACCAGGA TCAGGACTTT 
GAGGTGGAGT TTGTGGATGT GCTCAACCAG CAGTGCCTGC GCTTTCTGCA AATGAAACGC 
GACAGTGCGG AAAAGAAGCG CGAGGGGCCA CTGGCCTTCA AGCAGATGTC TTGCTGCACG 
GTGAACGAGG TTCAGAAGTT CATCTCGGAC TTGGGCATCA GCAAGGTTAA TCTGGCGGAG 
GCCGATCTGG AAACAATTCT CAAAACAGTG GTGTACGACG GCAATGCGGA GCGAGTGCGC 
CAGCAGGATG GATCCTTCGT CTACCGGGCG GTGAACGCCC CACTTCCTCC GACTGGTCTG 
GTCCAGATGC CATGTGGCAT TTGTCCCGTC ATCAAAAACT GCTCCAATTG TGGCGATGTA 
ACTGCTATAA CTTGTGAATA TATGCGAGAT TGGTTGGATT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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CG5380 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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