Gene Symbol | Cln3 |
Entrez Gene ID | 39981 |
Full Name | CG5582 gene product from transcript CG5582-RA |
Synonyms | CG5582,CLN3,Dmel\CG5582 |
Gene Type | protein-coding |
Organism | Drosophila melanogaster(fruit fly) |
Genome |
ORF » Species Summary » Drosophila melanogaster » Cln3 cDNA ORF clone
Gene Symbol | Cln3 |
Entrez Gene ID | 39981 |
Full Name | CG5582 gene product from transcript CG5582-RA |
Synonyms | CG5582,CLN3,Dmel\CG5582 |
Gene Type | protein-coding |
Organism | Drosophila melanogaster(fruit fly) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001275070.1 | NP_001261999.1 | Cln3, isoform B |
NM_140754.2 | NP_649011.1 | Cln3, isoform A |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP003934 | XP_318386.5 |
Caenorhabditis elegans (roundworm) | cln-3.3 | NP_505237.1 |
Neurospora crassa | NCU10272 | XP_001728107.1 |
Caenorhabditis elegans (roundworm) | cln-3.1 | NP_001256315.1 |
Eremothecium gossypii | AGOS_AEL171C | NP_984690.1 |
Canis lupus familiaris (dog) | CLN3 | NP_001013435.1 |
Bos taurus (cattle) | CLN3 | NP_001068642.2 |
Mus musculus (house mouse) | Cln3 | NP_034037.3 |
Rattus norvegicus (Norway rat) | Cln3 | NP_001006972.1 |
Danio rerio (zebrafish) | cln3 | NP_001007307.1 |
Xenopus tropicalis (tropical clawed frog) | cln3 | XP_004919824.1 |
Caenorhabditis elegans (roundworm) | cln-3.2 | NP_491556.1 |
Saccharomyces cerevisiae (baker's yeast) | YHC3 | NP_012476.1 |
Kluyveromyces lactis | KLLA0F01551g | XP_455150.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_06604 | XP_003716923.1 |
Homo sapiens (human) | CLN3 | NP_001035897.1 |
Drosophila melanogaster (fruit fly) | cln3 | NP_649011.1 |
Schizosaccharomyces pombe (fission yeast) | btn1 | NP_593598.1 |
Neurospora crassa | NCU08408 | XP_963280.2 |
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
lack of CLN3 function leads to a failure to manage the response to oxidative stress.
Title: The Batten disease gene CLN3 is required for the response to oxidative stress.
CLN3 interacts with Notch and Jun N-terminal kinase signalling pathways.
Title: Interactions between the juvenile Batten disease gene, CLN3, and the Notch and JNK signalling pathways.
The following Cln3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Cln3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OFa18844 | |
Clone ID Related Accession (Same CDS sequence) | NM_001275070.1 , NM_140754.2 | |
Accession Version | NM_001275070.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1269bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Cln3, isoform B | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGACGGCAA CCAAGCAGCA AGAGGCTGAG GCCGAACATG ATCCCCAAGT GGTGGTCACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001261999.1 |
CDS | 107..1375 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001275070.1 |
1 | ATGACGGCAA CCAAGCAGCA AGAGGCTGAG GCCGAACATG ATCCCCAAGT GGTGGTCACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OFa18844 | |
Clone ID Related Accession (Same CDS sequence) | NM_001275070.1 , NM_140754.2 | |
Accession Version | NM_140754.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1269bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-24 | |
Organism | Drosophila melanogaster(fruit fly) | |
Product | Cln3, isoform A | |
Comment | Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_140754.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## |
1 | ATGACGGCAA CCAAGCAGCA AGAGGCTGAG GCCGAACATG ATCCCCAAGT GGTGGTCACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_649011.1 |
CDS | 71..1339 |
Translation |
Target ORF information:
Target ORF information:
|
NM_140754.2 |
1 | ATGACGGCAA CCAAGCAGCA AGAGGCTGAG GCCGAACATG ATCCCCAAGT GGTGGTCACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data. |
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders. |
Sequence finishing and mapping of Drosophila melanogaster heterochromatin. |
The Release 5.1 annotation of Drosophila melanogaster heterochromatin. |
Combined evidence annotation of transposable elements in genome sequences. |