Vajk1 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	Vajk1
Entrez Gene ID	34809
Full Name	CG16886 gene product from transcript CG16886-RB
Synonyms	BG:DS00180.2,Dmel\CG16886,vajk-1
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 2L Map Location: 34E4-34E4

mRNA and Protein(s)

mRNA	Protein	Name
NM_135844.4	NP_609688.3	Vajk1, isoform A
NM_001201871.2	NP_001188800.1	Vajk1, isoform B

Pathways from BioSystems

Homologies

Drosophila melanogaster (fruit fly)	CG16886	NP_609688.3
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP009758	XP_318844.4

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Vajk1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Vajk1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa14685	NM_001201871.2 Latest version!	Drosophila melanogaster Vajk1, transcript variant B (Vajk1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00
OFa16749	NM_135844.4 Latest version!	Drosophila melanogaster Vajk1, transcript variant A (Vajk1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Vajk1 ( NM_001201871.2 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001188800.1 Drosophila melanogaster Vajk1, transcript variant B (Vajk1), mRNA.

Price & Availability↑

CloneID	OFa14685
Clone ID Related Accession (Same CDS sequence)	NM_001201871.2
Accession Version	NM_001201871.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1077bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	Vajk1, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_001201871.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGAAGTCGA TGCGCACAGC GACATCGCTG GCTTTGGTCC TGCTCCTGGC CACCAGCTAC 
GTCCGAGCTG AGGACGAGAA GGCCGCCGCT CCCGCCGAGG AGAAGAAGGC TGAGCCGGAG 
GCCAAGGCTG CCGAGGCAGC GGCTAGCGAG GATACGACCA AGTCGAAGAG AGGACTGCAC 
CACTACGAGG ACTATCACCA TCATCACGTG CCTCACTTCC CGGTGCACGA GGAGAAGACA 
CTGACCGTCA TTAAGAAGGT GCCAGTGCCC GTGCCCATCG AGAAGATCGT ACATGTGCCC 
GTCGAGAAGC ACATCCATGT GCCCGTTAAG GTCAAGGTGC CAAAGCCCTA TCCGGTGATC 
AAACACATTC CCTACGAGGT GAAGGAGATC GTGAAGGTTC CCTACGAGGT GCCAGCTCCC 
TATCCCGTCG AGAAGCAGGT CCATGTGCCC GTCCATGTGC ACTACGACCG ACCAGTGCCC 
GTTAAGGTTC ATGTGCCCGC TCCCTACCCA GTCGAAAAGA AGGTCCATGT GCCAGTGAAG 
GTTCATGTTC CGGCTCCCTA TCCAGTCGAA AAGATTGTCC ACTACAATGT TGAGAAACAC 
GTGCACGTCG ACAAGCCATA TCCCGTGGAG AAGGTTGTCC ACTACCCGGT GAAGGTGCCC 
GTCGACAAGC CAGTGCCCCA CTACATCGAC AAACCAGTGC CCCACTATGT GGACAAACCA 
GTGCCAGTGC CCGTGATCAA GAAGGTGCCA GTGCCCGTCC ATGTGCCCTA TGATCGTCCC 
GTGCCCGTTC ATGTCGAGAA GCCAGTGCCC TATGAGGTCA AGGTCCATGT GCCCGCCCCC 
TACCCGGTGA TCAAGGAAGT GCCAGTGAAG GTGGAGAAAC ACGTTCCGTA CCCGGTCAAG 
ATCCCCGTGG AGAAGCCCGT CCATGTTCAC ATCGAGAAGC ACGTGCCGGA ATACCATGAG 
AAGCATGTCA CCTACAAGGA GCCGGAGTTC CACCACAAGC ACATCGAGGA GGATCATCAC 
CACGCGCCCA TCCATCACCA TTCGCACCCC ATTGTGGAAC ATGAGCACGA GCATTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001188800.1
CDS	194..1270
Translation	MKSMRTATSLALVLLLATSYVRAEDEKAAAPAEEKKAEPEAKAAEAAASEDTTKSKRGLHHYEDYHHHHVPHFPVHEEKTLTVIKKVPVPVPIEKIVHVPVEKHIHVPVKVKVPKPYPVIKHIPYEVKEIVKVPYEVPAPYPVEKQVHVPVHVHYDRPVPVKVHVPAPYPVEKKVHVPVKVHVPAPYPVEKIVHYNVEKHVHVDKPYPVEKVVHYPVKVPVDKPVPHYIDKPVPHYVDKPVPVPVIKKVPVPVHVPYDRPVPVHVEKPVPYEVKVHVPAPYPVIKEVPVKVEKHVPYPVKIPVEKPVHVHIEKHVPEYHEKHVTYKEPEFHHKHIEEDHHHAPIHHHSHPIVEHEHEH

Target ORF information:

RefSeq Version	NM_001201871.2
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster Vajk1, transcript variant B (Vajk1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001201871.2

ORF Insert Sequence:

ATGAAGTCGA TGCGCACAGC GACATCGCTG GCTTTGGTCC TGCTCCTGGC CACCAGCTAC 
GTCCGAGCTG AGGACGAGAA GGCCGCCGCT CCCGCCGAGG AGAAGAAGGC TGAGCCGGAG 
GCCAAGGCTG CCGAGGCAGC GGCTAGCGAG GATACGACCA AGTCGAAGAG AGGACTGCAC 
CACTACGAGG ACTATCACCA TCATCACGTG CCTCACTTCC CGGTGCACGA GGAGAAGACA 
CTGACCGTCA TTAAGAAGGT GCCAGTGCCC GTGCCCATCG AGAAGATCGT ACATGTGCCC 
GTCGAGAAGC ACATCCATGT GCCCGTTAAG GTCAAGGTGC CAAAGCCCTA TCCGGTGATC 
AAACACATTC CCTACGAGGT GAAGGAGATC GTGAAGGTTC CCTACGAGGT GCCAGCTCCC 
TATCCCGTCG AGAAGCAGGT CCATGTGCCC GTCCATGTGC ACTACGACCG ACCAGTGCCC 
GTTAAGGTTC ATGTGCCCGC TCCCTACCCA GTCGAAAAGA AGGTCCATGT GCCAGTGAAG 
GTTCATGTTC CGGCTCCCTA TCCAGTCGAA AAGATTGTCC ACTACAATGT TGAGAAACAC 
GTGCACGTCG ACAAGCCATA TCCCGTGGAG AAGGTTGTCC ACTACCCGGT GAAGGTGCCC 
GTCGACAAGC CAGTGCCCCA CTACATCGAC AAACCAGTGC CCCACTATGT GGACAAACCA 
GTGCCAGTGC CCGTGATCAA GAAGGTGCCA GTGCCCGTCC ATGTGCCCTA TGATCGTCCC 
GTGCCCGTTC ATGTCGAGAA GCCAGTGCCC TATGAGGTCA AGGTCCATGT GCCCGCCCCC 
TACCCGGTGA TCAAGGAAGT GCCAGTGAAG GTGGAGAAAC ACGTTCCGTA CCCGGTCAAG 
ATCCCCGTGG AGAAGCCCGT CCATGTTCAC ATCGAGAAGC ACGTGCCGGA ATACCATGAG 
AAGCATGTCA CCTACAAGGA GCCGGAGTTC CACCACAAGC ACATCGAGGA GGATCATCAC 
CACGCGCCCA TCCATCACCA TTCGCACCCC ATTGTGGAAC ATGAGCACGA GCATTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Vajk1 ( NM_135844.4 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_609688.3 Drosophila melanogaster Vajk1, transcript variant A (Vajk1), mRNA.

Price & Availability↑

CloneID	OFa16749
Clone ID Related Accession (Same CDS sequence)	NM_135844.4
Accession Version	NM_135844.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1122bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	Vajk1, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_135844.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGAAGTCGA TGCGCACAGC GACATCGCTG GCTTTGGTCC TGCTCCTGGC CACCAGCTAC 
GTCCGAGCTG AGGACGAGAA GGCCGCCGCT CCCGCCGAGG AGAAGAAGGC TGAGCCGGAG 
GCCAAGGCTG CCGAGGCAGC GGCTAGCGAG GATACGACCA AGTCGAAGAG AGGACTGCAC 
CACTACGAGG ACTATCACCA TCATCACGTG CCTCACTTCC CGGTGCACGA GGAGAAGACA 
CTGACCGTCA TTAAGAAGGT GCCAGTGCCC GTGCCCATCG AGAAGATCGT ACATGTGCCC 
GTCGAGAAGC ACATCCATGT GCCCGTTAAG GTCAAGGTGC CAAAGCCCTA TCCGGTGATC 
AAACACATTC CCTACGAGGT GAAGGAGATC GTGAAGGTTC CCTACGAGGT GCCAGCTCCC 
TATCCCGTCG AGAAGCAGGT CCATGTGCCC GTCCATGTGC ACTACGACCG ACCAGTGCCC 
GTTAAGGTTC ATGTGCCCGC TCCCTACCCA GTCGAAAAGA AGGTCCATGT GCCAGTGAAG 
GTTCATGTTC CGGCTCCCTA TCCAGTCGAA AAGATTGTCC ACTACAATGT TGAGAAACAC 
GTGCACGTCG ACAAGCCATA TCCCGTGGAG AAGGTTGTCC ACTACCCGGT GAAGGTGCCC 
GTCGACAAGC CAGTGCCCCA CTACATCGAC AAACCAGTGC CCCACTATGT GGACAAACCA 
GTGCCAGTGC CCGTGATCAA GAAGGTGCCA GTGCCCGTCC ATGTGCCCTA TGATCGTCCC 
GTGCCCGTTC ATGTCGAGAA GCCAGTGCCC TATGAGGTCA AGGTCCATGT GCCCGCCCCC 
TACCCGGTGA TCAAGGAAGT GCCAGTGAAG GTGGAGAAAC ACGTTCCGTA CCCGGTCAAG 
ATCCCCGTGG AGAAGCCCGT CCATGTTCAC ATCGAGAAGC ACGTGCCGGA ATACCATGAG 
AAGCATGTCA CCTACAAGGA GCCGGAGTTC CACCACAAGC ACATCGAGGA GGATCATCAC 
CACGCGCCCA TCCATCACCA TTCGCACCCC ATTGTGGAAC ATGAGCACGA GGTGGAGCAT 
GAATTTGCCT CTCATGATTA TCATTCATAT TACGGTTACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_609688.3
CDS	194..1315
Translation	MKSMRTATSLALVLLLATSYVRAEDEKAAAPAEEKKAEPEAKAAEAAASEDTTKSKRGLHHYEDYHHHHVPHFPVHEEKTLTVIKKVPVPVPIEKIVHVPVEKHIHVPVKVKVPKPYPVIKHIPYEVKEIVKVPYEVPAPYPVEKQVHVPVHVHYDRPVPVKVHVPAPYPVEKKVHVPVKVHVPAPYPVEKIVHYNVEKHVHVDKPYPVEKVVHYPVKVPVDKPVPHYIDKPVPHYVDKPVPVPVIKKVPVPVHVPYDRPVPVHVEKPVPYEVKVHVPAPYPVIKEVPVKVEKHVPYPVKIPVEKPVHVHIEKHVPEYHEKHVTYKEPEFHHKHIEEDHHHAPIHHHSHPIVEHEHEVEHEFASHDYHSYYGY

Target ORF information:

RefSeq Version	NM_135844.4
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster Vajk1, transcript variant A (Vajk1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_135844.4

ORF Insert Sequence:

ATGAAGTCGA TGCGCACAGC GACATCGCTG GCTTTGGTCC TGCTCCTGGC CACCAGCTAC 
GTCCGAGCTG AGGACGAGAA GGCCGCCGCT CCCGCCGAGG AGAAGAAGGC TGAGCCGGAG 
GCCAAGGCTG CCGAGGCAGC GGCTAGCGAG GATACGACCA AGTCGAAGAG AGGACTGCAC 
CACTACGAGG ACTATCACCA TCATCACGTG CCTCACTTCC CGGTGCACGA GGAGAAGACA 
CTGACCGTCA TTAAGAAGGT GCCAGTGCCC GTGCCCATCG AGAAGATCGT ACATGTGCCC 
GTCGAGAAGC ACATCCATGT GCCCGTTAAG GTCAAGGTGC CAAAGCCCTA TCCGGTGATC 
AAACACATTC CCTACGAGGT GAAGGAGATC GTGAAGGTTC CCTACGAGGT GCCAGCTCCC 
TATCCCGTCG AGAAGCAGGT CCATGTGCCC GTCCATGTGC ACTACGACCG ACCAGTGCCC 
GTTAAGGTTC ATGTGCCCGC TCCCTACCCA GTCGAAAAGA AGGTCCATGT GCCAGTGAAG 
GTTCATGTTC CGGCTCCCTA TCCAGTCGAA AAGATTGTCC ACTACAATGT TGAGAAACAC 
GTGCACGTCG ACAAGCCATA TCCCGTGGAG AAGGTTGTCC ACTACCCGGT GAAGGTGCCC 
GTCGACAAGC CAGTGCCCCA CTACATCGAC AAACCAGTGC CCCACTATGT GGACAAACCA 
GTGCCAGTGC CCGTGATCAA GAAGGTGCCA GTGCCCGTCC ATGTGCCCTA TGATCGTCCC 
GTGCCCGTTC ATGTCGAGAA GCCAGTGCCC TATGAGGTCA AGGTCCATGT GCCCGCCCCC 
TACCCGGTGA TCAAGGAAGT GCCAGTGAAG GTGGAGAAAC ACGTTCCGTA CCCGGTCAAG 
ATCCCCGTGG AGAAGCCCGT CCATGTTCAC ATCGAGAAGC ACGTGCCGGA ATACCATGAG 
AAGCATGTCA CCTACAAGGA GCCGGAGTTC CACCACAAGC ACATCGAGGA GGATCATCAC 
CACGCGCCCA TCCATCACCA TTCGCACCCC ATTGTGGAAC ATGAGCACGA GGTGGAGCAT 
GAATTTGCCT CTCATGATTA TCATTCATAT TACGGTTACT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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Vajk1 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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