CG43968 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	CG43968
Entrez Gene ID	14462915
Full Name	CG43968 gene product from transcript CG43968-RA
Synonyms	Dmel\CG43968,lincRNA.665
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3L Map Location: 80F9-80F9

mRNA and Protein(s)

mRNA	Protein	Name
NM_001275309.1	NP_001262238.1	uncharacterized protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following CG43968 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CG43968 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa19843	NM_001275309.1 Latest version!	Drosophila melanogaster uncharacterized protein (CG43968), partial mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

CG43968 ( NM_001275309.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001262238.1 Drosophila melanogaster uncharacterized protein (CG43968), partial mRNA.

Price & Availability↑

CloneID	OFa19843
Clone ID Related Accession (Same CDS sequence)	NM_001275309.1
Accession Version	NM_001275309.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3081bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	uncharacterized protein
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 3' end.

ATGTGTAGTA ACATTATCTC TACAGTAGCA TTTATGTGCC TATTGCCTAA TTTCGCACTT 
TTTCAAGAAA ACTTGACAAG GATAAAATGC CTTGACGAAT TTACTAATAC AACATCAGGC 
ACGGCATATT GGAAGTATAA AGGCATTCCT TACGCAATAT CTGAAGATCT GCTGTGCCTT 
AAGTCTAACC ATCAAATTTT AATGCGGGTG TGCGATACAA ACTATGGGCA TTGGATACCG 
GATTTGATAG AGTGCAAAAT AAAAAAAAAC AAAAATCTGC ACTGCCCTGA TGACCTTTTT 
GAAATTCAAA ACGTTGGTAA CATTCCAATT TGTCTAAAAA TTTCAACTGA ACCTAAAGCA 
TTTAATGAAC AATTTTGCTA CGGCTCAAAT ATAATTGCAA TGGACTTACA AAATTTTGAA 
CTATCCAAAG TATCTCAGTT CTTGAAAAAA ATGAATATAA GTGATTTTTG GCTGCCAATA 
CGTCGAAATG ACGAGCTAAT GCCTTATGAA GTACGTTTGC CAGGAAAATC TTGGAGAAAA 
GAAATAAATA GGAGCTTAAT ACATTTACAA AATAATCCCA ACGAGCACTG TCTGAAGCAT 
ACCATAAATA ATCAAACTCC AGCTGACTTT AAAAGCCAAA TAGTATCTGT TGACTGCAAC 
GCTTTCTTGA ATGCAGTTTG CATTTTTAAG TCGGAACTGA TATCTAATGC TGGATGCCCG 
AGCGGCTTCG GAGCTTTAGT CTATCAACCG GCAGTATGTT ATGGTATTGA CTGGAATAAT 
ACTACTTATG AACCCCTTGA TCTAAAAGAG TACTTAAAAA AACGAAATTG GCTAAGACGG 
ATATTAGCAA AGTATGTATT AAAGAAAAAT CGACACGAAT TTTTCAAAAT TGATTTCTTT 
ATTCACCACT CGACAAAAAT GGAATATGTT ATCAAAATGA GTCTATCGGA AGATTTCCAA 
ATTGTTAGCA AAGGCTTGAA ATGGATTCCA ACTTTAAGCA AACAAATTGT GAAGTCAAGT 
AGTGCTGTTG AAATGGTATT GGAAATAGAT CACAGATCTA AAGGGGTTAG ATTGGTGATT 
TATAATCGAA AGTATTTGTG GAAAAATAAC AACTCTTATG TTGGTGTTAA ATGTTTTGCA 
CTTTTAAAAT ATGGCACTTT AAAAAATGTC AGGTTAGACC TTATTTGGGA GAATCAAGAA 
CAATCGTATT CAATACTTAA AGTCAATATA GTTTCAAGCT ATCGCACCGA ATATTGGTGT 
GAAGGTCACA GCATTTTCGA GTTTCAACTG GTTTCCACCC GGTTATTTGT AGATGTTAAC 
AGGAGCATAG CGCCTGTATT TGTTTTACGC TGGAACGTTT CATGTATAAA TGCAAATTTT 
GCGTATAACT TGTGTGACGA AGTAACCGAT AAAAATTTAA GAAAGCTAAT AGAAAGTGTA 
TATGGAAACA ACAATCTGGG TAATCTTCTC ATATACGACG TTCGAATAAT GAATATAGAA 
TGGATCAAAA ATATGTGCGT TGTGTTTTGG ATTCATATTA CTGCGACTCT GAAATCAACA 
GCTTCAACTT ATCACAAGGA AATTGCCTTC GTGGACAATA CGCCGCGAAT TCCAAAAGAC 
TTTGTTGCCT TTATGAAAGT TAAAATTACA CTAAGCAATT TTTTTTTAAA TTTCATCAAG 
AATTCTACTT ATCTCCTACG TAGTACAGAT TATTGCTTTT CAGAGCTTTC ATTCTCAAAC 
GATGGGATGC ACCTTTGGTG GACTACAACG CGCATTGGTG AAATCGCTAT GACAAAGAAA 
TTGTGTATTC AAAAAGATGG CATGCCCTAT ACGCGATTAT GTTTAGGTGA TTTTGTTCAT 
GGCGCATATT GGAAAAAATT AACACAACCA GTCGTATGTG AAAGTCCCAA GAATAATACC 
AAAGTATTGC ATGATTTGCA AGTTGCCAAA ATGTTTAAGT CCCCACCCGA AAAAGTTTTA 
AAATATTTAA AAGATATAAT TGCAAATAGT AAAAATAGTA TAGTCCCAGC TGACATATTC 
CTTATTTATA AAATTTTTCA ATCAGTGCAT GAAATCCATT CATCAAATTC TGAGTTTCAA 
CAGACAACTA AAGACTTAAC TAATTGGAAG AATGCCATCT ATGAGATATT CGATATATAC 
AATGTATTAA TAGGCCTTGA CTCTAAAGTT ATAAAGATGT CTGCTGAGCT AAACGCAACA 
AATATGTTTT TGAAATCGTT TGAAATGTTA TTTGACACTT TATCTTTAAA TAATTTATCT 
TTTACTCAAA TAGATAATGG TGAAGAACAT TTAAATGATT TCAACAGCGA AACGATTGAC 
TATGATGATA TAGGAGTATC AGTATATGTT TCAAAATATA TTTTATATTT TTCAATTATT 
CCAAGTATTG CCAATGTTTC TGGAATAGCA TTGTTTGCAA ACAATAATAA AAAAAATACA 
CCTACAAAAC TAAAGGGAGC ATTTAAAAAT GAACATTACC GTTTTCTTCA AGTAAATCAT 
AACATAAATG ATGTTGTTAA TGAACCTGAC TTAGAGCTTG CTGCATATTT ACCAATAGAA 
CTAATAGACA CCTTGCAAGC TTCAACCAAT AAGACAAATG ACGTTATTGT TGTTATTAAG 
GTATACTCAA ATGATGAACT TTTTCAACAA TCTGTTAGGA ATTTAACACT ATTAAGCCGA 
GTAGTTTCTA TATCATTACC TGGGTATAGT TCATTTCTTC CTGTACCTGT GCCACTTATC 
TTTCGCAAAT CCAAGAACAA GAAGGTAAAT CCGCCAGGTT CCTGTTTAGT CTGGAACTAT 
GAGGGATGGA TCGATGGTTA TAGTATGTTA AGCTATTTCG AAAATAACGA AGGTATAGCG 
CTATGCCGTT TAAGGCGTTT GGCACCAACT GGATATTTCT TGGAGAAAAA AATTTCCATC 
GAAAACCATA TAATAAATCA CGATTTAAGA ATGAGTAATA CAAAGTTAAA TGGAAATATT 
ATTTATGTTA TTTTACTTTC TTGTTGCATA CTGATGTTTA TAGGATTTTT GTTTTGCAAG 
TGCATATTTA GACGTTTGTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001262238.1
CDS	23..3103
Translation	MCSNIISTVAFMCLLPNFALFQENLTRIKCLDEFTNTTSGTAYWKYKGIPYAISEDLLCLKSNHQILMRVCDTNYGHWIPDLIECKIKKNKNLHCPDDLFEIQNVGNIPICLKISTEPKAFNEQFCYGSNIIAMDLQNFELSKVSQFLKKMNISDFWLPIRRNDELMPYEVRLPGKSWRKEINRSLIHLQNNPNEHCLKHTINNQTPADFKSQIVSVDCNAFLNAVCIFKSELISNAGCPSGFGALVYQPAVCYGIDWNNTTYEPLDLKEYLKKRNWLRRILAKYVLKKNRHEFFKIDFFIHHSTKMEYVIKMSLSEDFQIVSKGLKWIPTLSKQIVKSSSAVEMVLEIDHRSKGVRLVIYNRKYLWKNNNSYVGVKCFALLKYGTLKNVRLDLIWENQEQSYSILKVNIVSSYRTEYWCEGHSIFEFQLVSTRLFVDVNRSIAPVFVLRWNVSCINANFAYNLCDEVTDKNLRKLIESVYGNNNLGNLLIYDVRIMNIEWIKNMCVVFWIHITATLKSTASTYHKEIAFVDNTPRIPKDFVAFMKVKITLSNFFLNFIKNSTYLLRSTDYCFSELSFSNDGMHLWWTTTRIGEIAMTKKLCIQKDGMPYTRLCLGDFVHGAYWKKLTQPVVCESPKNNTKVLHDLQVAKMFKSPPEKVLKYLKDIIANSKNSIVPADIFLIYKIFQSVHEIHSSNSEFQQTTKDLTNWKNAIYEIFDIYNVLIGLDSKVIKMSAELNATNMFLKSFEMLFDTLSLNNLSFTQIDNGEEHLNDFNSETIDYDDIGVSVYVSKYILYFSIIPSIANVSGIALFANNNKKNTPTKLKGAFKNEHYRFLQVNHNINDVVNEPDLELAAYLPIELIDTLQASTNKTNDVIVVIKVYSNDELFQQSVRNLTLLSRVVSISLPGYSSFLPVPVPLIFRKSKNKKVNPPGSCLVWNYEGWIDGYSMLSYFENNEGIALCRLRRLAPTGYFLEKKISIENHIINHDLRMSNTKLNGNIIYVILLSCCILMFIGFLFCKCIFRRL

Target ORF information:

RefSeq Version	NM_001275309.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster uncharacterized protein (CG43968), partial mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001275309.1

ORF Insert Sequence:

ATGTGTAGTA ACATTATCTC TACAGTAGCA TTTATGTGCC TATTGCCTAA TTTCGCACTT 
TTTCAAGAAA ACTTGACAAG GATAAAATGC CTTGACGAAT TTACTAATAC AACATCAGGC 
ACGGCATATT GGAAGTATAA AGGCATTCCT TACGCAATAT CTGAAGATCT GCTGTGCCTT 
AAGTCTAACC ATCAAATTTT AATGCGGGTG TGCGATACAA ACTATGGGCA TTGGATACCG 
GATTTGATAG AGTGCAAAAT AAAAAAAAAC AAAAATCTGC ACTGCCCTGA TGACCTTTTT 
GAAATTCAAA ACGTTGGTAA CATTCCAATT TGTCTAAAAA TTTCAACTGA ACCTAAAGCA 
TTTAATGAAC AATTTTGCTA CGGCTCAAAT ATAATTGCAA TGGACTTACA AAATTTTGAA 
CTATCCAAAG TATCTCAGTT CTTGAAAAAA ATGAATATAA GTGATTTTTG GCTGCCAATA 
CGTCGAAATG ACGAGCTAAT GCCTTATGAA GTACGTTTGC CAGGAAAATC TTGGAGAAAA 
GAAATAAATA GGAGCTTAAT ACATTTACAA AATAATCCCA ACGAGCACTG TCTGAAGCAT 
ACCATAAATA ATCAAACTCC AGCTGACTTT AAAAGCCAAA TAGTATCTGT TGACTGCAAC 
GCTTTCTTGA ATGCAGTTTG CATTTTTAAG TCGGAACTGA TATCTAATGC TGGATGCCCG 
AGCGGCTTCG GAGCTTTAGT CTATCAACCG GCAGTATGTT ATGGTATTGA CTGGAATAAT 
ACTACTTATG AACCCCTTGA TCTAAAAGAG TACTTAAAAA AACGAAATTG GCTAAGACGG 
ATATTAGCAA AGTATGTATT AAAGAAAAAT CGACACGAAT TTTTCAAAAT TGATTTCTTT 
ATTCACCACT CGACAAAAAT GGAATATGTT ATCAAAATGA GTCTATCGGA AGATTTCCAA 
ATTGTTAGCA AAGGCTTGAA ATGGATTCCA ACTTTAAGCA AACAAATTGT GAAGTCAAGT 
AGTGCTGTTG AAATGGTATT GGAAATAGAT CACAGATCTA AAGGGGTTAG ATTGGTGATT 
TATAATCGAA AGTATTTGTG GAAAAATAAC AACTCTTATG TTGGTGTTAA ATGTTTTGCA 
CTTTTAAAAT ATGGCACTTT AAAAAATGTC AGGTTAGACC TTATTTGGGA GAATCAAGAA 
CAATCGTATT CAATACTTAA AGTCAATATA GTTTCAAGCT ATCGCACCGA ATATTGGTGT 
GAAGGTCACA GCATTTTCGA GTTTCAACTG GTTTCCACCC GGTTATTTGT AGATGTTAAC 
AGGAGCATAG CGCCTGTATT TGTTTTACGC TGGAACGTTT CATGTATAAA TGCAAATTTT 
GCGTATAACT TGTGTGACGA AGTAACCGAT AAAAATTTAA GAAAGCTAAT AGAAAGTGTA 
TATGGAAACA ACAATCTGGG TAATCTTCTC ATATACGACG TTCGAATAAT GAATATAGAA 
TGGATCAAAA ATATGTGCGT TGTGTTTTGG ATTCATATTA CTGCGACTCT GAAATCAACA 
GCTTCAACTT ATCACAAGGA AATTGCCTTC GTGGACAATA CGCCGCGAAT TCCAAAAGAC 
TTTGTTGCCT TTATGAAAGT TAAAATTACA CTAAGCAATT TTTTTTTAAA TTTCATCAAG 
AATTCTACTT ATCTCCTACG TAGTACAGAT TATTGCTTTT CAGAGCTTTC ATTCTCAAAC 
GATGGGATGC ACCTTTGGTG GACTACAACG CGCATTGGTG AAATCGCTAT GACAAAGAAA 
TTGTGTATTC AAAAAGATGG CATGCCCTAT ACGCGATTAT GTTTAGGTGA TTTTGTTCAT 
GGCGCATATT GGAAAAAATT AACACAACCA GTCGTATGTG AAAGTCCCAA GAATAATACC 
AAAGTATTGC ATGATTTGCA AGTTGCCAAA ATGTTTAAGT CCCCACCCGA AAAAGTTTTA 
AAATATTTAA AAGATATAAT TGCAAATAGT AAAAATAGTA TAGTCCCAGC TGACATATTC 
CTTATTTATA AAATTTTTCA ATCAGTGCAT GAAATCCATT CATCAAATTC TGAGTTTCAA 
CAGACAACTA AAGACTTAAC TAATTGGAAG AATGCCATCT ATGAGATATT CGATATATAC 
AATGTATTAA TAGGCCTTGA CTCTAAAGTT ATAAAGATGT CTGCTGAGCT AAACGCAACA 
AATATGTTTT TGAAATCGTT TGAAATGTTA TTTGACACTT TATCTTTAAA TAATTTATCT 
TTTACTCAAA TAGATAATGG TGAAGAACAT TTAAATGATT TCAACAGCGA AACGATTGAC 
TATGATGATA TAGGAGTATC AGTATATGTT TCAAAATATA TTTTATATTT TTCAATTATT 
CCAAGTATTG CCAATGTTTC TGGAATAGCA TTGTTTGCAA ACAATAATAA AAAAAATACA 
CCTACAAAAC TAAAGGGAGC ATTTAAAAAT GAACATTACC GTTTTCTTCA AGTAAATCAT 
AACATAAATG ATGTTGTTAA TGAACCTGAC TTAGAGCTTG CTGCATATTT ACCAATAGAA 
CTAATAGACA CCTTGCAAGC TTCAACCAAT AAGACAAATG ACGTTATTGT TGTTATTAAG 
GTATACTCAA ATGATGAACT TTTTCAACAA TCTGTTAGGA ATTTAACACT ATTAAGCCGA 
GTAGTTTCTA TATCATTACC TGGGTATAGT TCATTTCTTC CTGTACCTGT GCCACTTATC 
TTTCGCAAAT CCAAGAACAA GAAGGTAAAT CCGCCAGGTT CCTGTTTAGT CTGGAACTAT 
GAGGGATGGA TCGATGGTTA TAGTATGTTA AGCTATTTCG AAAATAACGA AGGTATAGCG 
CTATGCCGTT TAAGGCGTTT GGCACCAACT GGATATTTCT TGGAGAAAAA AATTTCCATC 
GAAAACCATA TAATAAATCA CGATTTAAGA ATGAGTAATA CAAAGTTAAA TGGAAATATT 
ATTTATGTTA TTTTACTTTC TTGTTGCATA CTGATGTTTA TAGGATTTTT GTTTTGCAAG 
TGCATATTTA GACGTTTGTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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CG43968 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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