sobpa cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	sobpa
Entrez Gene ID	573683
Full Name	sine oculis binding protein homolog (Drosophila) a
Synonyms	jxc1a,si:dkey-47e6.1
General protein information	Preferred Names sine oculis binding protein homolog (Drosophila) a Names sine oculis-binding protein homolog Jxc1-A jackson circler protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001098618.1	NP_001092088.1	sine oculis-binding protein homolog A

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	SOBP	XP_003950979.1
Danio rerio (zebrafish)	sobpa	NP_001092088.1
	SOBP	NP_001098004.1
Bos taurus (cattle)	SOBP	NP_001094640.2
Xenopus tropicalis (tropical clawed frog)	sobp	NP_001096678.1
Homo sapiens (human)	SOBP	NP_060483.3
Canis lupus familiaris (dog)	SOBP	XP_005627839.1
Mus musculus (house mouse)	Sobp	NP_780616.4
Rattus norvegicus (Norway rat)	Sobp	NP_001098110.1
Gallus gallus (chicken)	SOBP	NP_001103647.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

A versatile gene trap to visualize and interrogate the function of the vertebrate proteome.
Trinh le A, Hochgreb T, Graham M, Wu D, Ruf-Zamojski F, Jayasena CS, Saxena A, Hawk R, Gonzalez-Serricchio A, Dixson A, Chow E, Gonzales C, Leung HY, Solomon I, Bronner-Fraser M, Megason SG, Fraser SE
Genes & development25(21)2306-20(2011 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following sobpa gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the sobpa cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa38523	NM_001098618.1 Latest version!	Danio rerio sine oculis binding protein homolog (Drosophila) a (sobpa), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

sobpa ( NM_001098618.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001092088.1 Danio rerio sine oculis binding protein homolog (Drosophila) a (sobpa), mRNA.

Price & Availability↑

CloneID	ODa38523
Clone ID Related Accession (Same CDS sequence)	NM_001098618.1
Accession Version	NM_001098618.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2811bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	sine oculis-binding protein homolog A
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ655703.1. On Jun 14, 2007 this sequence version replaced XM_691785.2. ##Evidence-Data-START## Transcript exon combination :: DQ655703.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476729, SAMEA4476730 [ECO:0000348] ##Evidence-Data-END##

ATGGCTGAGA TGGAGAAAGA GGGAAGACCT CCGGAAAGCA AGAGGAGCAG AAAGCCAGCT 
CACCCTGTGA AGAGGGAAAT TAACGCAGAG ATGAAGGTCC CGTCCAATCG GCCCCTCCCA 
GGGGCGGGGC AGGCAGGCAA TCTCCATGGC AACTCGCCCT ACTTGATGAG TTTTGCTGAA 
AACACCATGA ATGAGTTACT TGGATGGTAC GGATACGACA AAGTGGAGTT ACGAGATTCG 
GACGACATAG AGATCCGCAA CTATCCTGAC GGAGAAATGC GGCAACACAT CTCTGTCCTG 
AAAGAGAACT CTTTGCCAAA AGCATCCACA TTGGAGAACA GCAGTGGTTC TCCTCCACAC 
GCCAACAGCT CTGGCTCTAC TCCCACATCA CGCAATGGAG TGACAGCTGA GTCGTCTGTA 
AACCCCTCCT CCTCAAAGGA GCACGGAGGC CTGCCAATCA TAGTGCCCTT AATCCCGCCC 
CCTCTCATAA AAGCACCAGC AGAGGAGGAC TCGTCTAATG TTCAGATCAT GTGTGCGTGG 
TGTCAGAAGG TGGGAGTGAA GCGTTATTCT CTCAGTATGG GCTCTGAGCT CAAGAGCTTC 
TGTAGTGAGA AATGCTTCGC TGCCTGTCGA CGTGCCTACT TCAAACGCAA CAAGCTTGGA 
TATGTGAGGA ATTGCAGTGC CAGAGAGGAG GAGGGTGTTC CGACCCACAG CTTGTCCAAA 
GACACGCCCA GACTTGTGCT CAAGACAAAC AGCGATGTGC TTGTCTGTGA TTGGTGCAAA 
CACATCCGCC ACACTAAGGA ATACCTGGAT TTTGGAGCTG GTGAGAGGAG GCTTCAGTTT 
TGCAGTGCTA AGTGTCTGAA CCAATATAAG ATGGACATAT TCTATAAAGA GACTCAGGCT 
GCTCTGCCAG GGGGTTTGTG TAACCCTCCT CTCCCCACCA GTGATACAAA ATCAGAGAGC 
GGTGCGGGTG TACAGCTCCT TACACCCGAG TCCTGGAGTG CACCTCTGAG TGAGCTCCGC 
AGTCGAAAGG CACCTTCACC AGTGGGTGCC ACTATAGCTG GACCTTCTGG ATCCACGTCA 
GGGTCACCAT CTGAAGCTGG AACTGTGTGT TCCTCATCGT CCTCATCATC TTCATCATCA 
TCATCAACGA AAATACCCAC ACCGCGGCCA CACGAAAGCC CTTCTTTACC GCCACCTCAT 
CCACCACCTA TATCAGGGCT ACATCCAGCT CTGGGTATGC CACCCGGCAG CCCACCTATG 
GTCATGACAC CTCGAGGCCC AGTTCCTTTC CCTATCTTCA TGGAGCACCA GATGATGCAG 
CAGATGCGCC CTCCGTTTCT ACGCCCACCA GGCCCAAACA GCCCTCATTC CAATCCCATG 
ATTCCTGGCA TTGGGCCACC ACCACCTCCA CGGACTTTGT GTCCTCCATC AAGCCCCATG 
CATCGCCCAC TCCTTTCCCC CCATTTACAC CCTTCCTCTA CCCCAACCCT TTCTGGGAAC 
CCTCCAGGTA TAATGCCCCC TCACCCTGCT GCCCACATGC CAGGCTTGCC TTTCCCCCCA 
GTTAACATGA TGCCATCTGG TCCCATCCCA GTTCCACCTA TTATGAATAT TGGCATGCCT 
TCTCTGGCCC CCTTAGTGCC TCCACCAACG TTATTAGTGC CCTATCCAGT GATTGTGCCA 
TTGCCAGTCC CCATACCCAT ACCAGTGCCC ATACCATACA ATCCGCAGCG GTCAGGTGAC 
AGACCAGGAA ATGATGGAAC ACTTCCAAAC ACTGCAAACG AGCAGAAGGA TTCAAAAGCA 
CCACCATCAT TTTCCTCTAG AGGAGAGGAG AGGGACTTTC AGAAAGCCCC TCCTAACTCA 
GACACGCTTT CACCAGAATT TTCCAAGCAG ACGGAGCAGG GTAGGACAAA CATGGCAGAT 
TTGATGGTTA AAATGGAAAA CTCTGGTAAA GGAAGTTCTG AACACTCACA TAAAGACACA 
CCAGCAGATG GAGTCATTGA TCTTACGACC AGTCATCGCT CCCGGCAACA GCTAGTGATC 
CAGAGGGCTG TAACCTGTGT GCAGGTAAAA GCAGAGCCCG GGTTAAGTCC ACCGCCTGCA 
CTTTTGGGTG AAACTGAGTT GGATGGGTCA ACAAGTATTA GCACAGGAAC AGCAAAAGAT 
GACCACAGAG ACACATACAG TAATGCTGAA AGCCCATTGG CTAGTGTAGC TCTGCCTTGT 
GCTGACCCAT CCTACTGCAG CGGCACACCA CCACTTTCTC AGCCAATCAC ATGCAGTGCC 
TCCATTATCC CTAGCAACAT CACCACCGCT AAGACTGAGC CTGGCTCTGC TACACCCTGC 
AATGTGATCG TTAATGGGAG CTGTAATTTG CCTCCAACAG AGAGTTTGAT CAGAACGCCT 
CCGTTAGAAC AACGCCCTCA GGTGGACACC TGCCGCAGGA CGGCCACTGT GTGCGATGAG 
CCTGCGGGGG CAGATCTAGA AGGAGAGGAC CTGAAAGAGA ACAGTTGCCT AGCCACAGAA 
AAAGACTCGG CAGGTAAGAG ATGTTCAAAT GACCAGTCTG CTATTACTAC AGGCACAGGG 
GATGATAAAT CTCAGAGCCC TGAAGATGAC CCATCTGGTG AGGACCATGC CTACGCCTTG 
CCCCTCATGC CCAAACCTGG CTGTGTCATT CAACCCGTGC CCAAACCTGC TGAAAAAACT 
GCTGCCATCT TGCCCTGTGG CTTGACAGCC CCATTAACAG GAACTGTTCC GATGGAAATG 
GAGCCTCCAC TGAAGAGAAG GTGTCTGCGT ATCCGCAATC AGAACAAATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001092088.1
CDS	1..2811
Translation	MAEMEKEGRPPESKRSRKPAHPVKREINAEMKVPSNRPLPGAGQAGNLHGNSPYLMSFAENTMNELLGWYGYDKVELRDSDDIEIRNYPDGEMRQHISVLKENSLPKASTLENSSGSPPHANSSGSTPTSRNGVTAESSVNPSSSKEHGGLPIIVPLIPPPLIKAPAEEDSSNVQIMCAWCQKVGVKRYSLSMGSELKSFCSEKCFAACRRAYFKRNKLGYVRNCSAREEEGVPTHSLSKDTPRLVLKTNSDVLVCDWCKHIRHTKEYLDFGAGERRLQFCSAKCLNQYKMDIFYKETQAALPGGLCNPPLPTSDTKSESGAGVQLLTPESWSAPLSELRSRKAPSPVGATIAGPSGSTSGSPSEAGTVCSSSSSSSSSSSSTKIPTPRPHESPSLPPPHPPPISGLHPALGMPPGSPPMVMTPRGPVPFPIFMEHQMMQQMRPPFLRPPGPNSPHSNPMIPGIGPPPPPRTLCPPSSPMHRPLLSPHLHPSSTPTLSGNPPGIMPPHPAAHMPGLPFPPVNMMPSGPIPVPPIMNIGMPSLAPLVPPPTLLVPYPVIVPLPVPIPIPVPIPYNPQRSGDRPGNDGTLPNTANEQKDSKAPPSFSSRGEERDFQKAPPNSDTLSPEFSKQTEQGRTNMADLMVKMENSGKGSSEHSHKDTPADGVIDLTTSHRSRQQLVIQRAVTCVQVKAEPGLSPPPALLGETELDGSTSISTGTAKDDHRDTYSNAESPLASVALPCADPSYCSGTPPLSQPITCSASIIPSNITTAKTEPGSATPCNVIVNGSCNLPPTESLIRTPPLEQRPQVDTCRRTATVCDEPAGADLEGEDLKENSCLATEKDSAGKRCSNDQSAITTGTGDDKSQSPEDDPSGEDHAYALPLMPKPGCVIQPVPKPAEKTAAILPCGLTAPLTGTVPMEMEPPLKRRCLRIRNQNK

Target ORF information:

RefSeq Version	NM_001098618.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio sine oculis binding protein homolog (Drosophila) a (sobpa), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001098618.1

ORF Insert Sequence:

ATGGCTGAGA TGGAGAAAGA GGGAAGACCT CCGGAAAGCA AGAGGAGCAG AAAGCCAGCT 
CACCCTGTGA AGAGGGAAAT TAACGCAGAG ATGAAGGTCC CGTCCAATCG GCCCCTCCCA 
GGGGCGGGGC AGGCAGGCAA TCTCCATGGC AACTCGCCCT ACTTGATGAG TTTTGCTGAA 
AACACCATGA ATGAGTTACT TGGATGGTAC GGATACGACA AAGTGGAGTT ACGAGATTCG 
GACGACATAG AGATCCGCAA CTATCCTGAC GGAGAAATGC GGCAACACAT CTCTGTCCTG 
AAAGAGAACT CTTTGCCAAA AGCATCCACA TTGGAGAACA GCAGTGGTTC TCCTCCACAC 
GCCAACAGCT CTGGCTCTAC TCCCACATCA CGCAATGGAG TGACAGCTGA GTCGTCTGTA 
AACCCCTCCT CCTCAAAGGA GCACGGAGGC CTGCCAATCA TAGTGCCCTT AATCCCGCCC 
CCTCTCATAA AAGCACCAGC AGAGGAGGAC TCGTCTAATG TTCAGATCAT GTGTGCGTGG 
TGTCAGAAGG TGGGAGTGAA GCGTTATTCT CTCAGTATGG GCTCTGAGCT CAAGAGCTTC 
TGTAGTGAGA AATGCTTCGC TGCCTGTCGA CGTGCCTACT TCAAACGCAA CAAGCTTGGA 
TATGTGAGGA ATTGCAGTGC CAGAGAGGAG GAGGGTGTTC CGACCCACAG CTTGTCCAAA 
GACACGCCCA GACTTGTGCT CAAGACAAAC AGCGATGTGC TTGTCTGTGA TTGGTGCAAA 
CACATCCGCC ACACTAAGGA ATACCTGGAT TTTGGAGCTG GTGAGAGGAG GCTTCAGTTT 
TGCAGTGCTA AGTGTCTGAA CCAATATAAG ATGGACATAT TCTATAAAGA GACTCAGGCT 
GCTCTGCCAG GGGGTTTGTG TAACCCTCCT CTCCCCACCA GTGATACAAA ATCAGAGAGC 
GGTGCGGGTG TACAGCTCCT TACACCCGAG TCCTGGAGTG CACCTCTGAG TGAGCTCCGC 
AGTCGAAAGG CACCTTCACC AGTGGGTGCC ACTATAGCTG GACCTTCTGG ATCCACGTCA 
GGGTCACCAT CTGAAGCTGG AACTGTGTGT TCCTCATCGT CCTCATCATC TTCATCATCA 
TCATCAACGA AAATACCCAC ACCGCGGCCA CACGAAAGCC CTTCTTTACC GCCACCTCAT 
CCACCACCTA TATCAGGGCT ACATCCAGCT CTGGGTATGC CACCCGGCAG CCCACCTATG 
GTCATGACAC CTCGAGGCCC AGTTCCTTTC CCTATCTTCA TGGAGCACCA GATGATGCAG 
CAGATGCGCC CTCCGTTTCT ACGCCCACCA GGCCCAAACA GCCCTCATTC CAATCCCATG 
ATTCCTGGCA TTGGGCCACC ACCACCTCCA CGGACTTTGT GTCCTCCATC AAGCCCCATG 
CATCGCCCAC TCCTTTCCCC CCATTTACAC CCTTCCTCTA CCCCAACCCT TTCTGGGAAC 
CCTCCAGGTA TAATGCCCCC TCACCCTGCT GCCCACATGC CAGGCTTGCC TTTCCCCCCA 
GTTAACATGA TGCCATCTGG TCCCATCCCA GTTCCACCTA TTATGAATAT TGGCATGCCT 
TCTCTGGCCC CCTTAGTGCC TCCACCAACG TTATTAGTGC CCTATCCAGT GATTGTGCCA 
TTGCCAGTCC CCATACCCAT ACCAGTGCCC ATACCATACA ATCCGCAGCG GTCAGGTGAC 
AGACCAGGAA ATGATGGAAC ACTTCCAAAC ACTGCAAACG AGCAGAAGGA TTCAAAAGCA 
CCACCATCAT TTTCCTCTAG AGGAGAGGAG AGGGACTTTC AGAAAGCCCC TCCTAACTCA 
GACACGCTTT CACCAGAATT TTCCAAGCAG ACGGAGCAGG GTAGGACAAA CATGGCAGAT 
TTGATGGTTA AAATGGAAAA CTCTGGTAAA GGAAGTTCTG AACACTCACA TAAAGACACA 
CCAGCAGATG GAGTCATTGA TCTTACGACC AGTCATCGCT CCCGGCAACA GCTAGTGATC 
CAGAGGGCTG TAACCTGTGT GCAGGTAAAA GCAGAGCCCG GGTTAAGTCC ACCGCCTGCA 
CTTTTGGGTG AAACTGAGTT GGATGGGTCA ACAAGTATTA GCACAGGAAC AGCAAAAGAT 
GACCACAGAG ACACATACAG TAATGCTGAA AGCCCATTGG CTAGTGTAGC TCTGCCTTGT 
GCTGACCCAT CCTACTGCAG CGGCACACCA CCACTTTCTC AGCCAATCAC ATGCAGTGCC 
TCCATTATCC CTAGCAACAT CACCACCGCT AAGACTGAGC CTGGCTCTGC TACACCCTGC 
AATGTGATCG TTAATGGGAG CTGTAATTTG CCTCCAACAG AGAGTTTGAT CAGAACGCCT 
CCGTTAGAAC AACGCCCTCA GGTGGACACC TGCCGCAGGA CGGCCACTGT GTGCGATGAG 
CCTGCGGGGG CAGATCTAGA AGGAGAGGAC CTGAAAGAGA ACAGTTGCCT AGCCACAGAA 
AAAGACTCGG CAGGTAAGAG ATGTTCAAAT GACCAGTCTG CTATTACTAC AGGCACAGGG 
GATGATAAAT CTCAGAGCCC TGAAGATGAC CCATCTGGTG AGGACCATGC CTACGCCTTG 
CCCCTCATGC CCAAACCTGG CTGTGTCATT CAACCCGTGC CCAAACCTGC TGAAAAAACT 
GCTGCCATCT TGCCCTGTGG CTTGACAGCC CCATTAACAG GAACTGTTCC GATGGAAATG 
GAGCCTCCAC TGAAGAGAAG GTGTCTGCGT ATCCGCAATC AGAACAAATA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

A versatile gene trap to visualize and interrogate the function of the vertebrate proteome.
Genes & development25(21)2306-20(2011 Nov)
Trinh le A,Hochgreb T,Graham M,Wu D,Ruf-Zamojski F,Jayasena CS,Saxena A,Hawk R,Gonzalez-Serricchio A,Dixson A,Chow E,Gonzales C,Leung HY,Solomon I,Bronner-Fraser M,Megason SG,Fraser SE

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sobpa cDNA ORF clone, Danio rerio(zebrafish)

Gene

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gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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