col9a3 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	col9a3
Entrez Gene ID	567110
Full Name	collagen, type IX, alpha 3
Synonyms	cb367,sb:cb367,si:ch73-162j3.1,wu:fa04f01
General protein information	Preferred Names collagen, type IX, alpha 3 Names collagen alpha-3(IX) chain alpha 3 type IX collagen
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001305573.1	NP_001292502.1	collagen alpha-3(IX) chain precursor

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	COL9A3	NP_990636.1
Bos taurus (cattle)	COL9A3	XP_002692454.2
Mus musculus (house mouse)	Col9a3	NP_034066.2
Rattus norvegicus (Norway rat)	Col9a3	XP_003749688.1
Homo sapiens (human)	COL9A3	NP_001844.3
Canis lupus familiaris (dog)	COL9A3	NP_001184100.1
Danio rerio (zebrafish)	col9a3	XP_695491.2
Xenopus tropicalis (tropical clawed frog)	col9a3	NP_001120497.1
Pan troglodytes (chimpanzee)	COL9A3	XP_001150788.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following col9a3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the col9a3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa27310	NM_001305573.1 Latest version!	Danio rerio collagen, type IX, alpha 3 (col9a3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

col9a3 ( NM_001305573.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001292502.1 Danio rerio collagen, type IX, alpha 3 (col9a3), mRNA.

Price & Availability↑

CloneID	ODa27310
Clone ID Related Accession (Same CDS sequence)	NM_001305573.1
Accession Version	NM_001305573.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2040bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-11-23
Organism	Danio rerio(zebrafish)
Product	collagen alpha-3(IX) chain precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX323461.27. On Mar 19, 2015 this sequence version replaced XM_690399.6. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC133087.1, GFIL01004530.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476766, SAMEA4476802 [ECO:0000348] ##Evidence-Data-END##

ATGGTCGTGT TCTCAGCACT GCATTTACTC TATTTCTTAC TGTTTCTAAC ATCCACACTC 
GGCCAGCTGA GGCCGGGTCC GCGCGGAGCT CCTGGGCTGC CGGGGCCACC AGGACCCCCA 
GGGAAAGATG GCATCGATGG TAAAACAGGC CCTGCTGGAC TTCCCGGAAA GCCTGGTCCG 
AAAGGAAAAG CAGGTAAAGC GGGCGCTGCT GGAAGCCCAG GACTGCCAGG CCTGCCCGGT 
GTGGATGGTT TGACTGGTCC AGACGGTCCC GCTGGCAAAG ATGGACCACC AGGAGCACCA 
GGTGACTCCG GACCCCCTGG ACCCGATGGA CCCCCTGGCA GAGGGAGGCC AGGAGCTCTG 
GGTCTCGCTG GAGCCAATGG TCTTCCAGGA GGAGCGGGAC CCCAGGGTCC GCCGGGTCCT 
GAGGGTCTGC CAGGACTCCC TGGTCTCCCA GGCACAGACG GACCTCCTGG ACTTCCAGGA 
ACTCTTCCTG AAGGCAGTGG AGATCTTCTG TGTCCTGCCA TCTGCCCTCC GGGTCCTCCT 
GGACCTCCAG GAATGCCTGG ATTTAAGGGT CATACAGGCC ATAAAGGAAG TAAAGGAGAG 
TTGGGGAAAG ATGGTGAGAA GGGGGATCAG GGCCCGCCGG GTCCACCAGG AGTCCCAGGA 
ACTGTGGGAT TACAGGGCTC TCGGGGGCTG AGAGGGCTGC AGGGTCCGGT CGGAGCAGTA 
GGAGACAGAG GAATACCTGG TTCCAGAGGA AAGCCTGGAA TTGCTGGCAT TATTGGGAAA 
ACCGGGGATG TTGGAGAAAA AGGACCTCAA GGTTTTAAAG GGCCCAAAGG AGAGATAGGG 
AAAATAGGCC CCAAGGGCGT GCCTGGAGGT GCAGGACCTA AAGGAGAACC TGGGATCCCT 
GGCAGGGACG GGAAGGATGG AACTCAAGGC CTGGATGGTG AAAAGGGAGA TGCGGGCAGA 
GCTGGAGTGG CTGGTGAGAA AGGGCCCAAT GGTCTGCCTG GTTTGCCTGG TAAAGCAGGA 
GCAAAAGGAG CCAAAGGAGG AGTCGGTAAT CCAGGAGAGA TGGGAGAAGC GGGGCCGTCT 
GGAGAGCCAG GTATACCTGG TGAGATCGGC ATCCCTGGAG AGCGAGGAGA GGCCGGAGGC 
AGAGGTGTGG CTGGTGGCGT TGGAGTACCT GGAAACACTG GACCACAAGG TGTGAAAGGA 
TTCCAGGGTG TGAAAGGAGC TTTGGGAGAT CCAGGTCTGC CTGGTCCAAC TGGAATCAGA 
GGCGGGTTTG GAGAGCGGGG ACCAGGTGGA GCTGGAGGAC CTAAAGGAGA CATGGGAGTT 
GCTGGAAGTG ATGGTCTGCC GGGAGAGAAC GGAGAGCCTG GTCCGTATGG TCCTGTCGGA 
CAGAAGGGAG AGCCTGGTAA ACATGGTGAA CTCGGATCCA AAGGAGTCGT AGGACCCCAA 
GGAGAGACCG GAGCTAGAGG AGTGCCCGGA AAACCAGGAC CGATGGGACT GCAGGGAGAA 
CAGGGCTTCC CCGGGGTTGC CGGAAAAACA GGAGTTCCTG GCAAGCTGGC GAGTGAGCAG 
CACATCAGGG AACTGTGTGG ATCAATGATT GATGATCAGA TAGCTCAGCT TGCCGCTAAC 
CTGAGAAGAC CTCTGGCTCC TGGGGCTGTG GGACGCCCTG GACCCCCTGG ACCTCCTGGA 
GAGCAAGGAG AAGTGGGATC TATTGGCCAC CCTGGATCCC TGGGCCCACC AGGATATAGA 
GGACTGCCTG GAGATCTGGG TGATCCTGGT CCTAGAGGGG ACGTCGGTGA GGCAGGTGAT 
AAGGGGCCGA TTGGTAAAGC AGTTGAAGGG CCCACTGGAG ACCAGGGTGA CCACGGTCTG 
CCTGGTGTGG ATGGCATCAT TAAAGATGGC CGTGACGGAG CTCCTGGAGA CCCGGGAGAG 
TCCGGAGAGC CAGGCAGAAG CGGCCGACCG GGACACCAGG GATCGCCGGG AATCTGCGAC 
ACAACAGCGT GTCAGGGCGC TGCACCTCAC GGGAAATCCT CCAACCCCAA GAACCATTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001292502.1
CDS	33..2072
Translation	MVVFSALHLLYFLLFLTSTLGQLRPGPRGAPGLPGPPGPPGKDGIDGKTGPAGLPGKPGPKGKAGKAGAAGSPGLPGLPGVDGLTGPDGPAGKDGPPGAPGDSGPPGPDGPPGRGRPGALGLAGANGLPGGAGPQGPPGPEGLPGLPGLPGTDGPPGLPGTLPEGSGDLLCPAICPPGPPGPPGMPGFKGHTGHKGSKGELGKDGEKGDQGPPGPPGVPGTVGLQGSRGLRGLQGPVGAVGDRGIPGSRGKPGIAGIIGKTGDVGEKGPQGFKGPKGEIGKIGPKGVPGGAGPKGEPGIPGRDGKDGTQGLDGEKGDAGRAGVAGEKGPNGLPGLPGKAGAKGAKGGVGNPGEMGEAGPSGEPGIPGEIGIPGERGEAGGRGVAGGVGVPGNTGPQGVKGFQGVKGALGDPGLPGPTGIRGGFGERGPGGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGEPGKHGELGSKGVVGPQGETGARGVPGKPGPMGLQGEQGFPGVAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANLRRPLAPGAVGRPGPPGPPGEQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEAGDKGPIGKAVEGPTGDQGDHGLPGVDGIIKDGRDGAPGDPGESGEPGRSGRPGHQGSPGICDTTACQGAAPHGKSSNPKNH

Target ORF information:

RefSeq Version	NM_001305573.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio collagen, type IX, alpha 3 (col9a3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001305573.1

ORF Insert Sequence:

ATGGTCGTGT TCTCAGCACT GCATTTACTC TATTTCTTAC TGTTTCTAAC ATCCACACTC 
GGCCAGCTGA GGCCGGGTCC GCGCGGAGCT CCTGGGCTGC CGGGGCCACC AGGACCCCCA 
GGGAAAGATG GCATCGATGG TAAAACAGGC CCTGCTGGAC TTCCCGGAAA GCCTGGTCCG 
AAAGGAAAAG CAGGTAAAGC GGGCGCTGCT GGAAGCCCAG GACTGCCAGG CCTGCCCGGT 
GTGGATGGTT TGACTGGTCC AGACGGTCCC GCTGGCAAAG ATGGACCACC AGGAGCACCA 
GGTGACTCCG GACCCCCTGG ACCCGATGGA CCCCCTGGCA GAGGGAGGCC AGGAGCTCTG 
GGTCTCGCTG GAGCCAATGG TCTTCCAGGA GGAGCGGGAC CCCAGGGTCC GCCGGGTCCT 
GAGGGTCTGC CAGGACTCCC TGGTCTCCCA GGCACAGACG GACCTCCTGG ACTTCCAGGA 
ACTCTTCCTG AAGGCAGTGG AGATCTTCTG TGTCCTGCCA TCTGCCCTCC GGGTCCTCCT 
GGACCTCCAG GAATGCCTGG ATTTAAGGGT CATACAGGCC ATAAAGGAAG TAAAGGAGAG 
TTGGGGAAAG ATGGTGAGAA GGGGGATCAG GGCCCGCCGG GTCCACCAGG AGTCCCAGGA 
ACTGTGGGAT TACAGGGCTC TCGGGGGCTG AGAGGGCTGC AGGGTCCGGT CGGAGCAGTA 
GGAGACAGAG GAATACCTGG TTCCAGAGGA AAGCCTGGAA TTGCTGGCAT TATTGGGAAA 
ACCGGGGATG TTGGAGAAAA AGGACCTCAA GGTTTTAAAG GGCCCAAAGG AGAGATAGGG 
AAAATAGGCC CCAAGGGCGT GCCTGGAGGT GCAGGACCTA AAGGAGAACC TGGGATCCCT 
GGCAGGGACG GGAAGGATGG AACTCAAGGC CTGGATGGTG AAAAGGGAGA TGCGGGCAGA 
GCTGGAGTGG CTGGTGAGAA AGGGCCCAAT GGTCTGCCTG GTTTGCCTGG TAAAGCAGGA 
GCAAAAGGAG CCAAAGGAGG AGTCGGTAAT CCAGGAGAGA TGGGAGAAGC GGGGCCGTCT 
GGAGAGCCAG GTATACCTGG TGAGATCGGC ATCCCTGGAG AGCGAGGAGA GGCCGGAGGC 
AGAGGTGTGG CTGGTGGCGT TGGAGTACCT GGAAACACTG GACCACAAGG TGTGAAAGGA 
TTCCAGGGTG TGAAAGGAGC TTTGGGAGAT CCAGGTCTGC CTGGTCCAAC TGGAATCAGA 
GGCGGGTTTG GAGAGCGGGG ACCAGGTGGA GCTGGAGGAC CTAAAGGAGA CATGGGAGTT 
GCTGGAAGTG ATGGTCTGCC GGGAGAGAAC GGAGAGCCTG GTCCGTATGG TCCTGTCGGA 
CAGAAGGGAG AGCCTGGTAA ACATGGTGAA CTCGGATCCA AAGGAGTCGT AGGACCCCAA 
GGAGAGACCG GAGCTAGAGG AGTGCCCGGA AAACCAGGAC CGATGGGACT GCAGGGAGAA 
CAGGGCTTCC CCGGGGTTGC CGGAAAAACA GGAGTTCCTG GCAAGCTGGC GAGTGAGCAG 
CACATCAGGG AACTGTGTGG ATCAATGATT GATGATCAGA TAGCTCAGCT TGCCGCTAAC 
CTGAGAAGAC CTCTGGCTCC TGGGGCTGTG GGACGCCCTG GACCCCCTGG ACCTCCTGGA 
GAGCAAGGAG AAGTGGGATC TATTGGCCAC CCTGGATCCC TGGGCCCACC AGGATATAGA 
GGACTGCCTG GAGATCTGGG TGATCCTGGT CCTAGAGGGG ACGTCGGTGA GGCAGGTGAT 
AAGGGGCCGA TTGGTAAAGC AGTTGAAGGG CCCACTGGAG ACCAGGGTGA CCACGGTCTG 
CCTGGTGTGG ATGGCATCAT TAAAGATGGC CGTGACGGAG CTCCTGGAGA CCCGGGAGAG 
TCCGGAGAGC CAGGCAGAAG CGGCCGACCG GGACACCAGG GATCGCCGGG AATCTGCGAC 
ACAACAGCGT GTCAGGGCGC TGCACCTCAC GGGAAATCCT CCAACCCCAA GAACCATTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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col9a3 cDNA ORF clone, Danio rerio(zebrafish)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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